data_2AO5 # _entry.id 2AO5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2AO5 pdb_00002ao5 10.2210/pdb2ao5/pdb NDB AR0065 ? ? RCSB RCSB034119 ? ? WWPDB D_1000034119 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.conn_type_id' 7 4 'Structure model' '_struct_conn.id' 8 4 'Structure model' '_struct_conn.pdbx_dist_value' 9 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 11 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2AO5 _pdbx_database_status.recvd_initial_deposition_date 2005-08-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Utsunomiya, R.' 1 'Suto, K.' 2 'Balasundaresan, D.' 3 'Fukamizu, A.' 4 'Kumar, P.K.' 5 'Mizuno, H.' 6 # _citation.id primary _citation.title 'Structure of an RNA duplex r(GGCGBrUGCGCU)2 with terminal and internal tandem G.U base pairs.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 62 _citation.page_first 331 _citation.page_last 338 _citation.year 2006 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16510980 _citation.pdbx_database_id_DOI 10.1107/S0907444905043210 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Utsunomiya, R.' 1 ? primary 'Suto, K.' 2 ? primary 'Balasundaresan, D.' 3 ? primary 'Fukamizu, A.' 4 ? primary 'Kumar, P.K.' 5 ? primary 'Mizuno, H.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*GP*CP*GP*(5BU)P*GP*CP*GP*CP*U)-3'" 3287.844 4 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 250 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GGCG(5BU)GCGCU' _entity_poly.pdbx_seq_one_letter_code_can GGCGUGCGCU _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 5BU n 1 6 G n 1 7 C n 1 8 G n 1 9 C n 1 10 U n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 5BU 5 5 5 5BU 5BU A . n A 1 6 G 6 6 6 G G A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 C 9 9 9 C C A . n A 1 10 U 10 10 10 U U A . n B 1 1 G 1 1 1 G G B . n B 1 2 G 2 2 2 G G B . n B 1 3 C 3 3 3 C C B . n B 1 4 G 4 4 4 G G B . n B 1 5 5BU 5 5 5 5BU 5BU B . n B 1 6 G 6 6 6 G G B . n B 1 7 C 7 7 7 C C B . n B 1 8 G 8 8 8 G G B . n B 1 9 C 9 9 9 C C B . n B 1 10 U 10 10 10 U U B . n C 1 1 G 1 1 1 G G C . n C 1 2 G 2 2 2 G G C . n C 1 3 C 3 3 3 C C C . n C 1 4 G 4 4 4 G G C . n C 1 5 5BU 5 5 5 5BU 5BU C . n C 1 6 G 6 6 6 G G C . n C 1 7 C 7 7 7 C C C . n C 1 8 G 8 8 8 G G C . n C 1 9 C 9 9 9 C C C . n C 1 10 U 10 10 10 U U C . n D 1 1 G 1 1 1 G G D . n D 1 2 G 2 2 2 G G D . n D 1 3 C 3 3 3 C C D . n D 1 4 G 4 4 4 G G D . n D 1 5 5BU 5 5 5 5BU 5BU D . n D 1 6 G 6 6 6 G G D . n D 1 7 C 7 7 7 C C D . n D 1 8 G 8 8 8 G G D . n D 1 9 C 9 9 9 C C D . n D 1 10 U 10 10 10 U U D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG 1 198 198 MG MG A . F 3 HOH 1 12 12 HOH HOH A . F 3 HOH 2 14 14 HOH HOH A . F 3 HOH 3 15 15 HOH HOH A . F 3 HOH 4 21 21 HOH HOH A . F 3 HOH 5 24 24 HOH HOH A . F 3 HOH 6 25 25 HOH HOH A . F 3 HOH 7 33 33 HOH HOH A . F 3 HOH 8 34 34 HOH HOH A . F 3 HOH 9 35 35 HOH HOH A . F 3 HOH 10 36 36 HOH HOH A . F 3 HOH 11 37 37 HOH HOH A . F 3 HOH 12 38 38 HOH HOH A . F 3 HOH 13 39 39 HOH HOH A . F 3 HOH 14 46 46 HOH HOH A . F 3 HOH 15 51 51 HOH HOH A . F 3 HOH 16 57 57 HOH HOH A . F 3 HOH 17 58 58 HOH HOH A . F 3 HOH 18 59 59 HOH HOH A . F 3 HOH 19 60 60 HOH HOH A . F 3 HOH 20 71 71 HOH HOH A . F 3 HOH 21 85 85 HOH HOH A . F 3 HOH 22 86 86 HOH HOH A . F 3 HOH 23 94 94 HOH HOH A . F 3 HOH 24 105 105 HOH HOH A . F 3 HOH 25 106 106 HOH HOH A . F 3 HOH 26 112 112 HOH HOH A . F 3 HOH 27 116 116 HOH HOH A . F 3 HOH 28 125 125 HOH HOH A . F 3 HOH 29 131 131 HOH HOH A . F 3 HOH 30 133 133 HOH HOH A . F 3 HOH 31 134 134 HOH HOH A . F 3 HOH 32 136 136 HOH HOH A . F 3 HOH 33 137 137 HOH HOH A . F 3 HOH 34 163 163 HOH HOH A . F 3 HOH 35 167 167 HOH HOH A . F 3 HOH 36 169 169 HOH HOH A . F 3 HOH 37 170 170 HOH HOH A . F 3 HOH 38 174 174 HOH HOH A . F 3 HOH 39 175 175 HOH HOH A . F 3 HOH 40 176 176 HOH HOH A . F 3 HOH 41 180 180 HOH HOH A . F 3 HOH 42 183 183 HOH HOH A . F 3 HOH 43 184 184 HOH HOH A . F 3 HOH 44 188 188 HOH HOH A . F 3 HOH 45 189 189 HOH HOH A . F 3 HOH 46 190 190 HOH HOH A . F 3 HOH 47 192 192 HOH HOH A . F 3 HOH 48 196 196 HOH HOH A . F 3 HOH 49 199 199 HOH HOH A . F 3 HOH 50 203 203 HOH HOH A . F 3 HOH 51 204 204 HOH HOH A . F 3 HOH 52 206 206 HOH HOH A . F 3 HOH 53 208 208 HOH HOH A . F 3 HOH 54 211 211 HOH HOH A . F 3 HOH 55 213 213 HOH HOH A . F 3 HOH 56 215 215 HOH HOH A . F 3 HOH 57 216 216 HOH HOH A . F 3 HOH 58 220 220 HOH HOH A . F 3 HOH 59 221 221 HOH HOH A . F 3 HOH 60 225 225 HOH HOH A . F 3 HOH 61 227 227 HOH HOH A . F 3 HOH 62 228 228 HOH HOH A . F 3 HOH 63 229 229 HOH HOH A . F 3 HOH 64 232 232 HOH HOH A . F 3 HOH 65 234 234 HOH HOH A . F 3 HOH 66 236 236 HOH HOH A . F 3 HOH 67 237 237 HOH HOH A . F 3 HOH 68 242 242 HOH HOH A . F 3 HOH 69 246 246 HOH HOH A . F 3 HOH 70 247 247 HOH HOH A . F 3 HOH 71 249 249 HOH HOH A . F 3 HOH 72 250 250 HOH HOH A . F 3 HOH 73 251 251 HOH HOH A . G 3 HOH 1 16 16 HOH HOH B . G 3 HOH 2 20 20 HOH HOH B . G 3 HOH 3 22 22 HOH HOH B . G 3 HOH 4 23 23 HOH HOH B . G 3 HOH 5 26 26 HOH HOH B . G 3 HOH 6 27 27 HOH HOH B . G 3 HOH 7 28 28 HOH HOH B . G 3 HOH 8 29 29 HOH HOH B . G 3 HOH 9 30 30 HOH HOH B . G 3 HOH 10 31 31 HOH HOH B . G 3 HOH 11 32 32 HOH HOH B . G 3 HOH 12 41 41 HOH HOH B . G 3 HOH 13 42 42 HOH HOH B . G 3 HOH 14 43 43 HOH HOH B . G 3 HOH 15 48 48 HOH HOH B . G 3 HOH 16 52 52 HOH HOH B . G 3 HOH 17 54 54 HOH HOH B . G 3 HOH 18 61 61 HOH HOH B . G 3 HOH 19 62 62 HOH HOH B . G 3 HOH 20 64 64 HOH HOH B . G 3 HOH 21 72 72 HOH HOH B . G 3 HOH 22 73 73 HOH HOH B . G 3 HOH 23 75 75 HOH HOH B . G 3 HOH 24 76 76 HOH HOH B . G 3 HOH 25 79 79 HOH HOH B . G 3 HOH 26 81 81 HOH HOH B . G 3 HOH 27 83 83 HOH HOH B . G 3 HOH 28 84 84 HOH HOH B . G 3 HOH 29 90 90 HOH HOH B . G 3 HOH 30 91 91 HOH HOH B . G 3 HOH 31 93 93 HOH HOH B . G 3 HOH 32 101 101 HOH HOH B . G 3 HOH 33 102 102 HOH HOH B . G 3 HOH 34 107 107 HOH HOH B . G 3 HOH 35 109 109 HOH HOH B . G 3 HOH 36 110 110 HOH HOH B . G 3 HOH 37 113 113 HOH HOH B . G 3 HOH 38 120 120 HOH HOH B . G 3 HOH 39 121 121 HOH HOH B . G 3 HOH 40 126 126 HOH HOH B . G 3 HOH 41 127 127 HOH HOH B . G 3 HOH 42 128 128 HOH HOH B . G 3 HOH 43 129 129 HOH HOH B . G 3 HOH 44 130 130 HOH HOH B . G 3 HOH 45 138 138 HOH HOH B . G 3 HOH 46 148 148 HOH HOH B . G 3 HOH 47 149 149 HOH HOH B . G 3 HOH 48 159 159 HOH HOH B . G 3 HOH 49 160 160 HOH HOH B . G 3 HOH 50 161 161 HOH HOH B . G 3 HOH 51 164 164 HOH HOH B . G 3 HOH 52 173 173 HOH HOH B . G 3 HOH 53 178 178 HOH HOH B . G 3 HOH 54 182 182 HOH HOH B . G 3 HOH 55 191 191 HOH HOH B . G 3 HOH 56 197 197 HOH HOH B . G 3 HOH 57 202 202 HOH HOH B . G 3 HOH 58 207 207 HOH HOH B . G 3 HOH 59 209 209 HOH HOH B . G 3 HOH 60 212 212 HOH HOH B . G 3 HOH 61 217 217 HOH HOH B . G 3 HOH 62 219 219 HOH HOH B . G 3 HOH 63 223 223 HOH HOH B . G 3 HOH 64 230 230 HOH HOH B . G 3 HOH 65 240 240 HOH HOH B . G 3 HOH 66 241 241 HOH HOH B . G 3 HOH 67 248 248 HOH HOH B . H 3 HOH 1 11 2 HOH HOH C . H 3 HOH 2 12 3 HOH HOH C . H 3 HOH 3 13 5 HOH HOH C . H 3 HOH 4 14 6 HOH HOH C . H 3 HOH 5 15 8 HOH HOH C . H 3 HOH 6 16 9 HOH HOH C . H 3 HOH 7 17 13 HOH HOH C . H 3 HOH 8 18 50 HOH HOH C . H 3 HOH 9 19 53 HOH HOH C . H 3 HOH 10 20 55 HOH HOH C . H 3 HOH 11 21 56 HOH HOH C . H 3 HOH 12 22 63 HOH HOH C . H 3 HOH 13 23 66 HOH HOH C . H 3 HOH 14 24 70 HOH HOH C . H 3 HOH 15 25 87 HOH HOH C . H 3 HOH 16 26 88 HOH HOH C . H 3 HOH 17 27 97 HOH HOH C . H 3 HOH 18 28 98 HOH HOH C . H 3 HOH 19 29 99 HOH HOH C . H 3 HOH 20 30 100 HOH HOH C . H 3 HOH 21 31 108 HOH HOH C . H 3 HOH 22 32 118 HOH HOH C . H 3 HOH 23 33 119 HOH HOH C . H 3 HOH 24 34 124 HOH HOH C . H 3 HOH 25 35 132 HOH HOH C . H 3 HOH 26 36 135 HOH HOH C . H 3 HOH 27 37 140 HOH HOH C . H 3 HOH 28 38 146 HOH HOH C . H 3 HOH 29 39 155 HOH HOH C . H 3 HOH 30 40 156 HOH HOH C . H 3 HOH 31 41 157 HOH HOH C . H 3 HOH 32 42 158 HOH HOH C . H 3 HOH 33 43 162 HOH HOH C . H 3 HOH 34 44 168 HOH HOH C . H 3 HOH 35 45 179 HOH HOH C . H 3 HOH 36 46 185 HOH HOH C . H 3 HOH 37 47 186 HOH HOH C . H 3 HOH 38 48 187 HOH HOH C . H 3 HOH 39 49 194 HOH HOH C . H 3 HOH 40 50 195 HOH HOH C . H 3 HOH 41 51 200 HOH HOH C . H 3 HOH 42 52 205 HOH HOH C . H 3 HOH 43 53 210 HOH HOH C . H 3 HOH 44 54 214 HOH HOH C . H 3 HOH 45 55 218 HOH HOH C . H 3 HOH 46 56 226 HOH HOH C . H 3 HOH 47 57 231 HOH HOH C . H 3 HOH 48 58 235 HOH HOH C . H 3 HOH 49 59 238 HOH HOH C . H 3 HOH 50 60 239 HOH HOH C . H 3 HOH 51 61 244 HOH HOH C . H 3 HOH 52 62 245 HOH HOH C . I 3 HOH 1 11 1 HOH HOH D . I 3 HOH 2 12 4 HOH HOH D . I 3 HOH 3 13 7 HOH HOH D . I 3 HOH 4 14 10 HOH HOH D . I 3 HOH 5 15 11 HOH HOH D . I 3 HOH 6 16 17 HOH HOH D . I 3 HOH 7 17 18 HOH HOH D . I 3 HOH 8 18 19 HOH HOH D . I 3 HOH 9 19 40 HOH HOH D . I 3 HOH 10 20 44 HOH HOH D . I 3 HOH 11 21 45 HOH HOH D . I 3 HOH 12 22 47 HOH HOH D . I 3 HOH 13 23 49 HOH HOH D . I 3 HOH 14 24 65 HOH HOH D . I 3 HOH 15 25 67 HOH HOH D . I 3 HOH 16 26 68 HOH HOH D . I 3 HOH 17 27 69 HOH HOH D . I 3 HOH 18 28 74 HOH HOH D . I 3 HOH 19 29 77 HOH HOH D . I 3 HOH 20 30 78 HOH HOH D . I 3 HOH 21 31 80 HOH HOH D . I 3 HOH 22 32 82 HOH HOH D . I 3 HOH 23 33 89 HOH HOH D . I 3 HOH 24 34 92 HOH HOH D . I 3 HOH 25 35 95 HOH HOH D . I 3 HOH 26 36 96 HOH HOH D . I 3 HOH 27 37 103 HOH HOH D . I 3 HOH 28 38 104 HOH HOH D . I 3 HOH 29 39 111 HOH HOH D . I 3 HOH 30 40 114 HOH HOH D . I 3 HOH 31 41 115 HOH HOH D . I 3 HOH 32 42 117 HOH HOH D . I 3 HOH 33 43 122 HOH HOH D . I 3 HOH 34 44 123 HOH HOH D . I 3 HOH 35 45 139 HOH HOH D . I 3 HOH 36 46 141 HOH HOH D . I 3 HOH 37 47 142 HOH HOH D . I 3 HOH 38 48 143 HOH HOH D . I 3 HOH 39 49 144 HOH HOH D . I 3 HOH 40 50 145 HOH HOH D . I 3 HOH 41 51 147 HOH HOH D . I 3 HOH 42 52 150 HOH HOH D . I 3 HOH 43 53 151 HOH HOH D . I 3 HOH 44 54 152 HOH HOH D . I 3 HOH 45 55 153 HOH HOH D . I 3 HOH 46 56 154 HOH HOH D . I 3 HOH 47 57 165 HOH HOH D . I 3 HOH 48 58 166 HOH HOH D . I 3 HOH 49 59 171 HOH HOH D . I 3 HOH 50 60 172 HOH HOH D . I 3 HOH 51 61 177 HOH HOH D . I 3 HOH 52 62 181 HOH HOH D . I 3 HOH 53 63 193 HOH HOH D . I 3 HOH 54 64 201 HOH HOH D . I 3 HOH 55 65 222 HOH HOH D . I 3 HOH 56 66 224 HOH HOH D . I 3 HOH 57 67 233 HOH HOH D . I 3 HOH 58 68 243 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 2AO5 _cell.length_a 37.693 _cell.length_b 37.693 _cell.length_c 96.283 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2AO5 _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2AO5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.60 _exptl_crystal.density_percent_sol 52.70 _exptl_crystal.description 'the file contains Friedel pairs.' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'MPD, spermine, magnesium chloride, cacodylate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 spermine ? ? ? 1 3 1 'magnesium chloride' ? ? ? 1 4 1 cacodylate ? ? ? 1 5 1 H2O ? ? ? 1 6 2 MPD ? ? ? 1 7 2 'magnesium chloride' ? ? ? 1 8 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2002-09-15 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.921 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-6B' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-6B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.921 # _reflns.entry_id 2AO5 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.1 _reflns.number_obs 15349 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value 0.068 _reflns.pdbx_netI_over_sigmaI 36 _reflns.B_iso_Wilson_estimate 28.8 _reflns.pdbx_redundancy 11.3 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.15 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.203 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 19.1 _reflns_shell.pdbx_redundancy 11.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 750 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2AO5 _refine.ls_number_reflns_obs 15349 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 401225.26 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.68 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 99.2 _refine.ls_R_factor_obs 0.222 _refine.ls_R_factor_all 0.222 _refine.ls_R_factor_R_work 0.207 _refine.ls_R_factor_R_free 0.25 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 779 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 36.9 _refine.aniso_B[1][1] 1.47 _refine.aniso_B[2][2] 1.47 _refine.aniso_B[3][3] -2.95 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.289298 _refine.solvent_model_param_bsol 76.8665 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'the file contains Friedel pairs.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2AO5 _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs 0.26 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.36 _refine_analyze.Luzzati_sigma_a_free 0.32 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 852 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 250 _refine_hist.number_atoms_total 1103 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 29.68 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 6.6 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.34 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 2407 _refine_ls_shell.R_factor_R_work 0.279 _refine_ls_shell.percent_reflns_obs 98.9 _refine_ls_shell.R_factor_R_free 0.35 _refine_ls_shell.R_factor_R_free_error 0.030 _refine_ls_shell.percent_reflns_R_free 5.2 _refine_ls_shell.number_reflns_R_free 132 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 water.param water.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 bru.param bru.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2AO5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2AO5 _struct.title 'Crystal structure of an RNA duplex r(GGCGBrUGCGCU)2 with terminal and internal tandem G-U base pairs' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2AO5 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'G-U base pair, RNA duplex, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2AO5 _struct_ref.pdbx_db_accession 2AO5 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2AO5 A 1 ? 10 ? 2AO5 1 ? 10 ? 1 10 2 1 2AO5 B 1 ? 10 ? 2AO5 1 ? 10 ? 1 10 3 1 2AO5 C 1 ? 10 ? 2AO5 1 ? 10 ? 1 10 4 1 2AO5 D 1 ? 10 ? 2AO5 1 ? 10 ? 1 10 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G 2 1 C,D,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 4 "O3'" ? ? ? 1_555 A 5BU 5 P ? ? A G 4 A 5BU 5 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale2 covale both ? A 5BU 5 "O3'" ? ? ? 1_555 A G 6 P ? ? A 5BU 5 A G 6 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale3 covale both ? B G 4 "O3'" ? ? ? 1_555 B 5BU 5 P ? ? B G 4 B 5BU 5 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale4 covale both ? B 5BU 5 "O3'" ? ? ? 1_555 B G 6 P ? ? B 5BU 5 B G 6 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale5 covale both ? C G 4 "O3'" ? ? ? 1_555 C 5BU 5 P ? ? C G 4 C 5BU 5 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale6 covale both ? C 5BU 5 "O3'" ? ? ? 1_555 C G 6 P ? ? C 5BU 5 C G 6 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale7 covale both ? D G 4 "O3'" ? ? ? 1_555 D 5BU 5 P ? ? D G 4 D 5BU 5 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale8 covale both ? D 5BU 5 "O3'" ? ? ? 1_555 D G 6 P ? ? D 5BU 5 D G 6 1_555 ? ? ? ? ? ? ? 1.609 ? ? metalc1 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 198 A HOH 228 1_555 ? ? ? ? ? ? ? 2.526 ? ? metalc2 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 198 A HOH 249 1_555 ? ? ? ? ? ? ? 2.158 ? ? metalc3 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 198 A HOH 250 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 198 A HOH 251 1_555 ? ? ? ? ? ? ? 1.787 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B U 10 O2 ? ? A G 1 B U 10 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A G 1 O6 ? ? ? 1_555 B U 10 N3 ? ? A G 1 B U 10 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 2 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 2 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 2 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 3 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 3 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 3 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 4 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 4 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 4 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A 5BU 5 N3 ? ? ? 1_555 B G 6 O6 ? ? A 5BU 5 B G 6 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A 5BU 5 O2 ? ? ? 1_555 B G 6 N1 ? ? A 5BU 5 B G 6 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 B 5BU 5 O2 ? ? A G 6 B 5BU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A G 6 O6 ? ? ? 1_555 B 5BU 5 N3 ? ? A G 6 B 5BU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 7 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 7 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 7 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 8 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 8 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 8 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 9 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 9 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 9 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 10 N3 ? ? ? 1_555 B G 1 O6 ? ? A U 10 B G 1 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A U 10 O2 ? ? ? 1_555 B G 1 N1 ? ? A U 10 B G 1 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? C G 1 N1 ? ? ? 1_555 D U 10 O2 ? ? C G 1 D U 10 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? C G 1 O6 ? ? ? 1_555 D U 10 N3 ? ? C G 1 D U 10 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 9 N3 ? ? C G 2 D C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 9 O2 ? ? C G 2 D C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 9 N4 ? ? C G 2 D C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C C 3 N3 ? ? ? 1_555 D G 8 N1 ? ? C C 3 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C C 3 N4 ? ? ? 1_555 D G 8 O6 ? ? C C 3 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C C 3 O2 ? ? ? 1_555 D G 8 N2 ? ? C C 3 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C G 4 N1 ? ? ? 1_555 D C 7 N3 ? ? C G 4 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C G 4 N2 ? ? ? 1_555 D C 7 O2 ? ? C G 4 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C G 4 O6 ? ? ? 1_555 D C 7 N4 ? ? C G 4 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C 5BU 5 N3 ? ? ? 1_555 D G 6 O6 ? ? C 5BU 5 D G 6 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog39 hydrog ? ? C 5BU 5 O2 ? ? ? 1_555 D G 6 N1 ? ? C 5BU 5 D G 6 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog40 hydrog ? ? C G 6 N1 ? ? ? 1_555 D 5BU 5 O2 ? ? C G 6 D 5BU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog41 hydrog ? ? C G 6 O6 ? ? ? 1_555 D 5BU 5 N3 ? ? C G 6 D 5BU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog42 hydrog ? ? C C 7 N3 ? ? ? 1_555 D G 4 N1 ? ? C C 7 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C C 7 N4 ? ? ? 1_555 D G 4 O6 ? ? C C 7 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C C 7 O2 ? ? ? 1_555 D G 4 N2 ? ? C C 7 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C G 8 N1 ? ? ? 1_555 D C 3 N3 ? ? C G 8 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C G 8 N2 ? ? ? 1_555 D C 3 O2 ? ? C G 8 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C G 8 O6 ? ? ? 1_555 D C 3 N4 ? ? C G 8 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C C 9 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 9 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C C 9 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 9 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C C 9 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 9 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C U 10 N3 ? ? ? 1_555 D G 1 O6 ? ? C U 10 D G 1 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog52 hydrog ? ? C U 10 O2 ? ? ? 1_555 D G 1 N1 ? ? C U 10 D G 1 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? F HOH . ? A HOH 228 ? 1_555 MG ? E MG . ? A MG 198 ? 1_555 O ? F HOH . ? A HOH 249 ? 1_555 123.1 ? 2 O ? F HOH . ? A HOH 228 ? 1_555 MG ? E MG . ? A MG 198 ? 1_555 O ? F HOH . ? A HOH 250 ? 1_555 67.0 ? 3 O ? F HOH . ? A HOH 249 ? 1_555 MG ? E MG . ? A MG 198 ? 1_555 O ? F HOH . ? A HOH 250 ? 1_555 113.9 ? 4 O ? F HOH . ? A HOH 228 ? 1_555 MG ? E MG . ? A MG 198 ? 1_555 O ? F HOH . ? A HOH 251 ? 1_555 79.0 ? 5 O ? F HOH . ? A HOH 249 ? 1_555 MG ? E MG . ? A MG 198 ? 1_555 O ? F HOH . ? A HOH 251 ? 1_555 125.1 ? 6 O ? F HOH . ? A HOH 250 ? 1_555 MG ? E MG . ? A MG 198 ? 1_555 O ? F HOH . ? A HOH 251 ? 1_555 120.9 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 198 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 198' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 5BU A 5 ? 5BU A 5 . ? 1_555 ? 2 AC1 6 G A 6 ? G A 6 . ? 1_555 ? 3 AC1 6 HOH F . ? HOH A 228 . ? 1_555 ? 4 AC1 6 HOH F . ? HOH A 249 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 250 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH A 251 . ? 1_555 ? # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5BU 5 A 5BU 5 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 2 B 5BU 5 B 5BU 5 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 3 C 5BU 5 C 5BU 5 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 4 D 5BU 5 D 5BU 5 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5BU P P N N 1 5BU OP1 O N N 2 5BU OP2 O N N 3 5BU OP3 O N N 4 5BU "O5'" O N N 5 5BU "C5'" C N N 6 5BU "C4'" C N R 7 5BU "O4'" O N N 8 5BU "C3'" C N S 9 5BU "O3'" O N N 10 5BU "C2'" C N R 11 5BU "O2'" O N N 12 5BU "C1'" C N R 13 5BU N1 N N N 14 5BU C2 C N N 15 5BU O2 O N N 16 5BU N3 N N N 17 5BU C4 C N N 18 5BU O4 O N N 19 5BU C5 C N N 20 5BU C6 C N N 21 5BU BR BR N N 22 5BU HOP2 H N N 23 5BU HOP3 H N N 24 5BU "H5'" H N N 25 5BU "H5''" H N N 26 5BU "H4'" H N N 27 5BU "H3'" H N N 28 5BU "HO3'" H N N 29 5BU "H2'" H N N 30 5BU "HO2'" H N N 31 5BU "H1'" H N N 32 5BU H3 H N N 33 5BU H6 H N N 34 C OP3 O N N 35 C P P N N 36 C OP1 O N N 37 C OP2 O N N 38 C "O5'" O N N 39 C "C5'" C N N 40 C "C4'" C N R 41 C "O4'" O N N 42 C "C3'" C N S 43 C "O3'" O N N 44 C "C2'" C N R 45 C "O2'" O N N 46 C "C1'" C N R 47 C N1 N N N 48 C C2 C N N 49 C O2 O N N 50 C N3 N N N 51 C C4 C N N 52 C N4 N N N 53 C C5 C N N 54 C C6 C N N 55 C HOP3 H N N 56 C HOP2 H N N 57 C "H5'" H N N 58 C "H5''" H N N 59 C "H4'" H N N 60 C "H3'" H N N 61 C "HO3'" H N N 62 C "H2'" H N N 63 C "HO2'" H N N 64 C "H1'" H N N 65 C H41 H N N 66 C H42 H N N 67 C H5 H N N 68 C H6 H N N 69 G OP3 O N N 70 G P P N N 71 G OP1 O N N 72 G OP2 O N N 73 G "O5'" O N N 74 G "C5'" C N N 75 G "C4'" C N R 76 G "O4'" O N N 77 G "C3'" C N S 78 G "O3'" O N N 79 G "C2'" C N R 80 G "O2'" O N N 81 G "C1'" C N R 82 G N9 N Y N 83 G C8 C Y N 84 G N7 N Y N 85 G C5 C Y N 86 G C6 C N N 87 G O6 O N N 88 G N1 N N N 89 G C2 C N N 90 G N2 N N N 91 G N3 N N N 92 G C4 C Y N 93 G HOP3 H N N 94 G HOP2 H N N 95 G "H5'" H N N 96 G "H5''" H N N 97 G "H4'" H N N 98 G "H3'" H N N 99 G "HO3'" H N N 100 G "H2'" H N N 101 G "HO2'" H N N 102 G "H1'" H N N 103 G H8 H N N 104 G H1 H N N 105 G H21 H N N 106 G H22 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 MG MG MG N N 111 U OP3 O N N 112 U P P N N 113 U OP1 O N N 114 U OP2 O N N 115 U "O5'" O N N 116 U "C5'" C N N 117 U "C4'" C N R 118 U "O4'" O N N 119 U "C3'" C N S 120 U "O3'" O N N 121 U "C2'" C N R 122 U "O2'" O N N 123 U "C1'" C N R 124 U N1 N N N 125 U C2 C N N 126 U O2 O N N 127 U N3 N N N 128 U C4 C N N 129 U O4 O N N 130 U C5 C N N 131 U C6 C N N 132 U HOP3 H N N 133 U HOP2 H N N 134 U "H5'" H N N 135 U "H5''" H N N 136 U "H4'" H N N 137 U "H3'" H N N 138 U "HO3'" H N N 139 U "H2'" H N N 140 U "HO2'" H N N 141 U "H1'" H N N 142 U H3 H N N 143 U H5 H N N 144 U H6 H N N 145 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5BU P OP1 doub N N 1 5BU P OP2 sing N N 2 5BU P OP3 sing N N 3 5BU P "O5'" sing N N 4 5BU OP2 HOP2 sing N N 5 5BU OP3 HOP3 sing N N 6 5BU "O5'" "C5'" sing N N 7 5BU "C5'" "C4'" sing N N 8 5BU "C5'" "H5'" sing N N 9 5BU "C5'" "H5''" sing N N 10 5BU "C4'" "O4'" sing N N 11 5BU "C4'" "C3'" sing N N 12 5BU "C4'" "H4'" sing N N 13 5BU "O4'" "C1'" sing N N 14 5BU "C3'" "O3'" sing N N 15 5BU "C3'" "C2'" sing N N 16 5BU "C3'" "H3'" sing N N 17 5BU "O3'" "HO3'" sing N N 18 5BU "C2'" "O2'" sing N N 19 5BU "C2'" "C1'" sing N N 20 5BU "C2'" "H2'" sing N N 21 5BU "O2'" "HO2'" sing N N 22 5BU "C1'" N1 sing N N 23 5BU "C1'" "H1'" sing N N 24 5BU N1 C2 sing N N 25 5BU N1 C6 sing N N 26 5BU C2 O2 doub N N 27 5BU C2 N3 sing N N 28 5BU N3 C4 sing N N 29 5BU N3 H3 sing N N 30 5BU C4 O4 doub N N 31 5BU C4 C5 sing N N 32 5BU C5 C6 doub N N 33 5BU C5 BR sing N N 34 5BU C6 H6 sing N N 35 C OP3 P sing N N 36 C OP3 HOP3 sing N N 37 C P OP1 doub N N 38 C P OP2 sing N N 39 C P "O5'" sing N N 40 C OP2 HOP2 sing N N 41 C "O5'" "C5'" sing N N 42 C "C5'" "C4'" sing N N 43 C "C5'" "H5'" sing N N 44 C "C5'" "H5''" sing N N 45 C "C4'" "O4'" sing N N 46 C "C4'" "C3'" sing N N 47 C "C4'" "H4'" sing N N 48 C "O4'" "C1'" sing N N 49 C "C3'" "O3'" sing N N 50 C "C3'" "C2'" sing N N 51 C "C3'" "H3'" sing N N 52 C "O3'" "HO3'" sing N N 53 C "C2'" "O2'" sing N N 54 C "C2'" "C1'" sing N N 55 C "C2'" "H2'" sing N N 56 C "O2'" "HO2'" sing N N 57 C "C1'" N1 sing N N 58 C "C1'" "H1'" sing N N 59 C N1 C2 sing N N 60 C N1 C6 sing N N 61 C C2 O2 doub N N 62 C C2 N3 sing N N 63 C N3 C4 doub N N 64 C C4 N4 sing N N 65 C C4 C5 sing N N 66 C N4 H41 sing N N 67 C N4 H42 sing N N 68 C C5 C6 doub N N 69 C C5 H5 sing N N 70 C C6 H6 sing N N 71 G OP3 P sing N N 72 G OP3 HOP3 sing N N 73 G P OP1 doub N N 74 G P OP2 sing N N 75 G P "O5'" sing N N 76 G OP2 HOP2 sing N N 77 G "O5'" "C5'" sing N N 78 G "C5'" "C4'" sing N N 79 G "C5'" "H5'" sing N N 80 G "C5'" "H5''" sing N N 81 G "C4'" "O4'" sing N N 82 G "C4'" "C3'" sing N N 83 G "C4'" "H4'" sing N N 84 G "O4'" "C1'" sing N N 85 G "C3'" "O3'" sing N N 86 G "C3'" "C2'" sing N N 87 G "C3'" "H3'" sing N N 88 G "O3'" "HO3'" sing N N 89 G "C2'" "O2'" sing N N 90 G "C2'" "C1'" sing N N 91 G "C2'" "H2'" sing N N 92 G "O2'" "HO2'" sing N N 93 G "C1'" N9 sing N N 94 G "C1'" "H1'" sing N N 95 G N9 C8 sing Y N 96 G N9 C4 sing Y N 97 G C8 N7 doub Y N 98 G C8 H8 sing N N 99 G N7 C5 sing Y N 100 G C5 C6 sing N N 101 G C5 C4 doub Y N 102 G C6 O6 doub N N 103 G C6 N1 sing N N 104 G N1 C2 sing N N 105 G N1 H1 sing N N 106 G C2 N2 sing N N 107 G C2 N3 doub N N 108 G N2 H21 sing N N 109 G N2 H22 sing N N 110 G N3 C4 sing N N 111 HOH O H1 sing N N 112 HOH O H2 sing N N 113 U OP3 P sing N N 114 U OP3 HOP3 sing N N 115 U P OP1 doub N N 116 U P OP2 sing N N 117 U P "O5'" sing N N 118 U OP2 HOP2 sing N N 119 U "O5'" "C5'" sing N N 120 U "C5'" "C4'" sing N N 121 U "C5'" "H5'" sing N N 122 U "C5'" "H5''" sing N N 123 U "C4'" "O4'" sing N N 124 U "C4'" "C3'" sing N N 125 U "C4'" "H4'" sing N N 126 U "O4'" "C1'" sing N N 127 U "C3'" "O3'" sing N N 128 U "C3'" "C2'" sing N N 129 U "C3'" "H3'" sing N N 130 U "O3'" "HO3'" sing N N 131 U "C2'" "O2'" sing N N 132 U "C2'" "C1'" sing N N 133 U "C2'" "H2'" sing N N 134 U "O2'" "HO2'" sing N N 135 U "C1'" N1 sing N N 136 U "C1'" "H1'" sing N N 137 U N1 C2 sing N N 138 U N1 C6 sing N N 139 U C2 O2 doub N N 140 U C2 N3 sing N N 141 U N3 C4 sing N N 142 U N3 H3 sing N N 143 U C4 O4 doub N N 144 U C4 C5 sing N N 145 U C5 C6 doub N N 146 U C5 H5 sing N N 147 U C6 H6 sing N N 148 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2AO5 'double helix' 2AO5 'a-form double helix' 2AO5 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B U 10 1_555 -2.450 -0.768 0.009 -4.820 -12.671 -2.507 1 A_G1:U10_B A 1 ? B 10 ? 28 ? 1 A G 2 1_555 B C 9 1_555 0.012 -0.210 0.198 1.131 -17.315 1.548 2 A_G2:C9_B A 2 ? B 9 ? 19 1 1 A C 3 1_555 B G 8 1_555 0.509 -0.352 -0.030 2.246 -14.238 2.531 3 A_C3:G8_B A 3 ? B 8 ? 19 1 1 A G 4 1_555 B C 7 1_555 -0.180 -0.269 0.016 -9.225 -15.228 -1.460 4 A_G4:C7_B A 4 ? B 7 ? 19 1 1 A 5BU 5 1_555 B G 6 1_555 2.103 -0.685 0.562 -10.823 -5.789 -3.788 5 A_5BU5:G6_B A 5 ? B 6 ? 28 1 1 A G 6 1_555 B 5BU 5 1_555 -1.712 -0.637 -0.031 -2.064 -13.709 -1.593 6 A_G6:5BU5_B A 6 ? B 5 ? 28 1 1 A C 7 1_555 B G 4 1_555 0.644 -0.231 0.129 2.842 -11.632 1.018 7 A_C7:G4_B A 7 ? B 4 ? 19 1 1 A G 8 1_555 B C 3 1_555 -0.367 -0.122 0.259 4.565 -8.160 3.209 8 A_G8:C3_B A 8 ? B 3 ? 19 1 1 A C 9 1_555 B G 2 1_555 0.434 -0.199 0.316 5.518 -13.011 1.453 9 A_C9:G2_B A 9 ? B 2 ? 19 1 1 A U 10 1_555 B G 1 1_555 2.342 -0.728 -0.041 4.130 -15.922 -3.362 10 A_U10:G1_B A 10 ? B 1 ? 28 ? 1 C G 1 1_555 D U 10 1_555 -2.561 -0.735 0.220 1.366 -14.643 -0.810 11 C_G1:U10_D C 1 ? D 10 ? 28 ? 1 C G 2 1_555 D C 9 1_555 -0.303 -0.188 0.211 -3.946 -14.046 -0.461 12 C_G2:C9_D C 2 ? D 9 ? 19 1 1 C C 3 1_555 D G 8 1_555 0.020 -0.175 0.570 -11.629 -7.668 -3.060 13 C_C3:G8_D C 3 ? D 8 ? 19 1 1 C G 4 1_555 D C 7 1_555 -0.044 -0.232 0.295 -4.196 -14.716 -1.745 14 C_G4:C7_D C 4 ? D 7 ? 19 1 1 C 5BU 5 1_555 D G 6 1_555 1.943 -0.650 0.275 -4.345 -7.018 -1.499 15 C_5BU5:G6_D C 5 ? D 6 ? 28 1 1 C G 6 1_555 D 5BU 5 1_555 -1.721 -0.660 0.289 0.570 -13.113 -4.158 16 C_G6:5BU5_D C 6 ? D 5 ? 28 1 1 C C 7 1_555 D G 4 1_555 0.431 -0.303 0.182 5.968 -16.096 2.668 17 C_C7:G4_D C 7 ? D 4 ? 19 1 1 C G 8 1_555 D C 3 1_555 -0.132 -0.203 0.261 2.870 -10.825 3.340 18 C_G8:C3_D C 8 ? D 3 ? 19 1 1 C C 9 1_555 D G 2 1_555 0.406 -0.177 0.025 5.184 -17.318 0.889 19 C_C9:G2_D C 9 ? D 2 ? 19 1 1 C U 10 1_555 D G 1 1_555 2.398 -0.802 0.308 -3.267 -17.124 -2.591 20 C_U10:G1_D C 10 ? D 1 ? 28 ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B U 10 1_555 A G 2 1_555 B C 9 1_555 -0.332 -1.316 3.106 -3.380 4.270 43.322 -2.153 0.143 2.985 5.757 4.556 43.647 1 AA_G1G2:C9U10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A G 2 1_555 B C 9 1_555 A C 3 1_555 B G 8 1_555 0.196 -1.304 3.225 3.272 6.070 33.781 -3.102 0.154 2.958 10.312 -5.559 34.458 2 AA_G2C3:G8C9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A C 3 1_555 B G 8 1_555 A G 4 1_555 B C 7 1_555 0.379 -1.781 3.235 1.993 19.477 28.518 -5.534 -0.381 1.725 34.830 -3.564 34.477 3 AA_C3G4:C7G8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A G 4 1_555 B C 7 1_555 A 5BU 5 1_555 B G 6 1_555 -0.237 -1.434 3.334 -2.311 3.367 43.818 -2.233 0.097 3.229 4.500 3.088 43.998 4 AA_G45BU5:G6C7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A 5BU 5 1_555 B G 6 1_555 A G 6 1_555 B 5BU 5 1_555 0.557 -2.870 2.647 6.896 11.962 10.707 -12.987 0.200 -0.114 45.383 -26.161 17.457 5 AA_5BU5G6:5BU5G6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A G 6 1_555 B 5BU 5 1_555 A C 7 1_555 B G 4 1_555 0.137 -1.310 3.174 -2.332 2.816 43.419 -2.025 -0.399 3.077 3.798 3.146 43.565 6 AA_G6C7:G45BU5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A C 7 1_555 B G 4 1_555 A G 8 1_555 B C 3 1_555 -0.752 -2.101 3.069 -3.644 10.817 20.361 -8.172 0.860 1.836 27.941 9.413 23.313 7 AA_C7G8:C3G4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A G 8 1_555 B C 3 1_555 A C 9 1_555 B G 2 1_555 -0.085 -1.452 3.265 -1.466 8.847 36.355 -3.368 -0.051 2.848 13.920 2.306 37.408 8 AA_G8C9:G2C3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A C 9 1_555 B G 2 1_555 A U 10 1_555 B G 1 1_555 0.097 -1.541 3.309 5.066 4.152 38.915 -2.768 0.449 3.122 6.178 -7.538 39.441 9 AA_C9U10:G1G2_BB A 9 ? B 2 ? A 10 ? B 1 ? 1 C G 1 1_555 D U 10 1_555 C G 2 1_555 D C 9 1_555 -0.422 -1.423 3.342 -3.615 6.346 41.201 -2.656 0.214 3.123 8.933 5.089 41.815 10 CC_G1G2:C9U10_DD C 1 ? D 10 ? C 2 ? D 9 ? 1 C G 2 1_555 D C 9 1_555 C C 3 1_555 D G 8 1_555 -0.211 -1.581 3.400 -2.739 9.924 35.096 -3.864 -0.034 2.870 16.036 4.425 36.529 11 CC_G2C3:G8C9_DD C 2 ? D 9 ? C 3 ? D 8 ? 1 C C 3 1_555 D G 8 1_555 C G 4 1_555 D C 7 1_555 0.815 -2.054 2.817 7.143 10.569 29.455 -5.221 -0.464 2.110 19.665 -13.291 32.043 12 CC_C3G4:C7G8_DD C 3 ? D 8 ? C 4 ? D 7 ? 1 C G 4 1_555 D C 7 1_555 C 5BU 5 1_555 D G 6 1_555 0.232 -1.489 3.232 1.791 1.718 40.371 -2.343 -0.139 3.176 2.487 -2.592 40.444 13 CC_G45BU5:G6C7_DD C 4 ? D 7 ? C 5 ? D 6 ? 1 C 5BU 5 1_555 D G 6 1_555 C G 6 1_555 D 5BU 5 1_555 -0.100 -2.680 2.704 0.302 10.534 12.249 -13.506 0.468 0.311 40.823 -1.169 16.145 14 CC_5BU5G6:5BU5G6_DD C 5 ? D 6 ? C 6 ? D 5 ? 1 C G 6 1_555 D 5BU 5 1_555 C C 7 1_555 D G 4 1_555 0.168 -1.345 3.181 0.493 -0.954 43.313 -1.732 -0.181 3.211 -1.293 -0.668 43.325 15 CC_G6C7:G45BU5_DD C 6 ? D 5 ? C 7 ? D 4 ? 1 C C 7 1_555 D G 4 1_555 C G 8 1_555 D C 3 1_555 -0.573 -1.973 3.102 -3.600 13.837 25.933 -6.263 0.499 1.890 28.263 7.352 29.554 16 CC_C7G8:C3G4_DD C 7 ? D 4 ? C 8 ? D 3 ? 1 C G 8 1_555 D C 3 1_555 C C 9 1_555 D G 2 1_555 -0.251 -1.358 3.165 0.802 3.520 34.557 -2.784 0.536 3.010 5.906 -1.346 34.740 17 CC_G8C9:G2C3_DD C 8 ? D 3 ? C 9 ? D 2 ? 1 C C 9 1_555 D G 2 1_555 C U 10 1_555 D G 1 1_555 0.213 -1.064 3.547 2.682 6.669 41.516 -2.212 -0.002 3.352 9.324 -3.750 42.107 18 CC_C9U10:G1G2_DD C 9 ? D 2 ? C 10 ? D 1 ? # _atom_sites.entry_id 2AO5 _atom_sites.fract_transf_matrix[1][1] 0.026530 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026530 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010386 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C MG N O P # loop_