data_2APH # _entry.id 2APH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2APH pdb_00002aph 10.2210/pdb2aph/pdb RCSB RCSB034163 ? ? WWPDB D_1000034163 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-27 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-04-04 5 'Structure model' 1 4 2020-07-29 6 'Structure model' 1 5 2023-08-23 7 'Structure model' 2 0 2023-11-15 8 'Structure model' 2 1 2023-11-29 9 'Structure model' 3 0 2024-02-28 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Data collection' 6 5 'Structure model' Advisory 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Structure summary' 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Database references' 12 6 'Structure model' 'Refinement description' 13 6 'Structure model' 'Structure summary' 14 7 'Structure model' 'Atomic model' 15 7 'Structure model' 'Data collection' 16 7 'Structure model' 'Derived calculations' 17 8 'Structure model' 'Database references' 18 9 'Structure model' Advisory 19 9 'Structure model' 'Atomic model' 20 9 'Structure model' 'Data collection' 21 9 'Structure model' 'Database references' 22 9 'Structure model' 'Derived calculations' 23 9 'Structure model' 'Polymer sequence' 24 9 'Structure model' 'Source and taxonomy' 25 9 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 4 'Structure model' pdbx_validate_polymer_linkage 3 5 'Structure model' chem_comp 4 5 'Structure model' database_PDB_caveat 5 5 'Structure model' pdbx_chem_comp_identifier 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site 8 5 'Structure model' struct_site_gen 9 6 'Structure model' chem_comp 10 6 'Structure model' chem_comp_atom 11 6 'Structure model' chem_comp_bond 12 6 'Structure model' database_2 13 6 'Structure model' pdbx_initial_refinement_model 14 7 'Structure model' atom_site 15 7 'Structure model' chem_comp_atom 16 7 'Structure model' chem_comp_bond 17 7 'Structure model' pdbx_validate_main_chain_plane 18 7 'Structure model' pdbx_validate_rmsd_angle 19 7 'Structure model' struct_conn 20 8 'Structure model' pdbx_database_related 21 9 'Structure model' atom_site 22 9 'Structure model' database_PDB_caveat 23 9 'Structure model' entity 24 9 'Structure model' entity_name_com 25 9 'Structure model' entity_poly 26 9 'Structure model' entity_poly_seq 27 9 'Structure model' entity_src_gen 28 9 'Structure model' pdbx_distant_solvent_atoms 29 9 'Structure model' pdbx_entity_nonpoly 30 9 'Structure model' pdbx_entity_src_syn 31 9 'Structure model' pdbx_nonpoly_scheme 32 9 'Structure model' pdbx_poly_seq_scheme 33 9 'Structure model' pdbx_struct_assembly_gen 34 9 'Structure model' pdbx_struct_mod_residue 35 9 'Structure model' pdbx_validate_chiral 36 9 'Structure model' pdbx_validate_close_contact 37 9 'Structure model' struct_asym 38 9 'Structure model' struct_conn 39 9 'Structure model' struct_ref 40 9 'Structure model' struct_ref_seq # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.type' 2 5 'Structure model' '_chem_comp.name' 3 5 'Structure model' '_chem_comp.type' 4 5 'Structure model' '_struct_conn.pdbx_dist_value' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 7 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 10 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 11 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 12 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 14 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 15 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 17 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 19 6 'Structure model' '_chem_comp.pdbx_synonyms' 20 6 'Structure model' '_database_2.pdbx_DOI' 21 6 'Structure model' '_database_2.pdbx_database_accession' 22 7 'Structure model' '_atom_site.auth_atom_id' 23 7 'Structure model' '_atom_site.label_atom_id' 24 7 'Structure model' '_chem_comp_atom.atom_id' 25 7 'Structure model' '_chem_comp_bond.atom_id_1' 26 7 'Structure model' '_chem_comp_bond.atom_id_2' 27 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 28 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 8 'Structure model' '_pdbx_database_related.db_name' 30 9 'Structure model' '_atom_site.B_iso_or_equiv' 31 9 'Structure model' '_atom_site.Cartn_x' 32 9 'Structure model' '_atom_site.Cartn_y' 33 9 'Structure model' '_atom_site.Cartn_z' 34 9 'Structure model' '_atom_site.auth_asym_id' 35 9 'Structure model' '_atom_site.auth_atom_id' 36 9 'Structure model' '_atom_site.auth_comp_id' 37 9 'Structure model' '_atom_site.auth_seq_id' 38 9 'Structure model' '_atom_site.group_PDB' 39 9 'Structure model' '_atom_site.label_asym_id' 40 9 'Structure model' '_atom_site.label_atom_id' 41 9 'Structure model' '_atom_site.label_comp_id' 42 9 'Structure model' '_atom_site.label_entity_id' 43 9 'Structure model' '_atom_site.label_seq_id' 44 9 'Structure model' '_atom_site.type_symbol' 45 9 'Structure model' '_database_PDB_caveat.text' 46 9 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 47 9 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 48 9 'Structure model' '_entity_src_gen.pdbx_beg_seq_num' 49 9 'Structure model' '_entity_src_gen.pdbx_end_seq_num' 50 9 'Structure model' '_entity_src_gen.pdbx_seq_type' 51 9 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 52 9 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 53 9 'Structure model' '_pdbx_entity_src_syn.pdbx_beg_seq_num' 54 9 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 55 9 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 56 9 'Structure model' '_pdbx_struct_mod_residue.label_seq_id' 57 9 'Structure model' '_pdbx_validate_chiral.auth_asym_id' 58 9 'Structure model' '_pdbx_validate_chiral.auth_atom_id' 59 9 'Structure model' '_pdbx_validate_chiral.auth_comp_id' 60 9 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 61 9 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 62 9 'Structure model' '_struct_conn.pdbx_dist_value' 63 9 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 64 9 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 65 9 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 66 9 'Structure model' '_struct_conn.ptnr1_label_atom_id' 67 9 'Structure model' '_struct_conn.ptnr1_label_comp_id' 68 9 'Structure model' '_struct_conn.ptnr1_label_seq_id' 69 9 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 70 9 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 71 9 'Structure model' '_struct_conn.ptnr2_label_asym_id' 72 9 'Structure model' '_struct_conn.ptnr2_label_atom_id' 73 9 'Structure model' '_struct_conn.ptnr2_label_comp_id' 74 9 'Structure model' '_struct_conn.ptnr2_label_seq_id' 75 9 'Structure model' '_struct_ref.pdbx_align_begin' 76 9 'Structure model' '_struct_ref_seq.db_align_beg' 77 9 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_beg' 78 9 'Structure model' '_struct_ref_seq.seq_align_end' # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'GMA C 885 HAS WRONG CHIRALITY AT ATOM CA' 2 'GMA D 996 HAS WRONG CHIRALITY AT ATOM CA' 3 'AMU C 901 HAS WRONG CHIRALITY AT ATOM C1' 4 'AMU D 1101 HAS WRONG CHIRALITY AT ATOM C1' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2APH _pdbx_database_status.recvd_initial_deposition_date 2005-08-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1SK3 'the same protein in free form' unspecified PDB 1SK4 'the same protein in free form' unspecified PDB 1TWQ 'the same protein in complex with another ligand' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Guan, R.' 1 'Roychowdjury, A.' 2 'Boons, G.' 3 'Mariuzza, R.A.' 4 # _citation.id primary _citation.title 'Crystal structure of human peptidoglycan recognition protein I alpha bound to a muramyl pentapeptide from Gram-positive bacteria.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 15 _citation.page_first 1199 _citation.page_last 1206 _citation.year 2006 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16641493 _citation.pdbx_database_id_DOI 10.1110/ps.062077606 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guan, R.' 1 ? primary 'Brown, P.H.' 2 ? primary 'Swaminathan, C.P.' 3 ? primary 'Roychowdhury, A.' 4 ? primary 'Boons, G.J.' 5 ? primary 'Mariuzza, R.A.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidoglycan recognition protein I-alpha' 18271.795 2 ? ? ? ? 2 polymer syn 'muramyl pentapeptide' 486.565 2 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 non-polymer man 'N-acetyl-beta-muramic acid' 293.270 2 ? ? ? ? 5 water nat water 18.015 231 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;VCPNIIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGV GWHIQGSHTYGFNDIALGIAFIGYFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMGHSDVVNILSPGQALYNIISTW PHFKH ; ;VCPNIIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGV GWHIQGSHTYGFNDIALGIAFIGYFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMGHSDVVNILSPGQALYNIISTW PHFKH ; A,B ? 2 'polypeptide(L)' no yes 'A(GMA)K(DAL)(DAL)(NH2)' AEKAAX C,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 'N-acetyl-beta-muramic acid' AMU 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 CYS n 1 3 PRO n 1 4 ASN n 1 5 ILE n 1 6 ILE n 1 7 LYS n 1 8 ARG n 1 9 SER n 1 10 ALA n 1 11 TRP n 1 12 GLU n 1 13 ALA n 1 14 ARG n 1 15 GLU n 1 16 THR n 1 17 HIS n 1 18 CYS n 1 19 PRO n 1 20 LYS n 1 21 MET n 1 22 ASN n 1 23 LEU n 1 24 PRO n 1 25 ALA n 1 26 LYS n 1 27 TYR n 1 28 VAL n 1 29 ILE n 1 30 ILE n 1 31 ILE n 1 32 HIS n 1 33 THR n 1 34 ALA n 1 35 GLY n 1 36 THR n 1 37 SER n 1 38 CYS n 1 39 THR n 1 40 VAL n 1 41 SER n 1 42 THR n 1 43 ASP n 1 44 CYS n 1 45 GLN n 1 46 THR n 1 47 VAL n 1 48 VAL n 1 49 ARG n 1 50 ASN n 1 51 ILE n 1 52 GLN n 1 53 SER n 1 54 PHE n 1 55 HIS n 1 56 MET n 1 57 ASP n 1 58 THR n 1 59 ARG n 1 60 ASN n 1 61 PHE n 1 62 CYS n 1 63 ASP n 1 64 ILE n 1 65 GLY n 1 66 TYR n 1 67 HIS n 1 68 PHE n 1 69 LEU n 1 70 VAL n 1 71 GLY n 1 72 GLN n 1 73 ASP n 1 74 GLY n 1 75 GLY n 1 76 VAL n 1 77 TYR n 1 78 GLU n 1 79 GLY n 1 80 VAL n 1 81 GLY n 1 82 TRP n 1 83 HIS n 1 84 ILE n 1 85 GLN n 1 86 GLY n 1 87 SER n 1 88 HIS n 1 89 THR n 1 90 TYR n 1 91 GLY n 1 92 PHE n 1 93 ASN n 1 94 ASP n 1 95 ILE n 1 96 ALA n 1 97 LEU n 1 98 GLY n 1 99 ILE n 1 100 ALA n 1 101 PHE n 1 102 ILE n 1 103 GLY n 1 104 TYR n 1 105 PHE n 1 106 VAL n 1 107 GLU n 1 108 LYS n 1 109 PRO n 1 110 PRO n 1 111 ASN n 1 112 ALA n 1 113 ALA n 1 114 ALA n 1 115 LEU n 1 116 GLU n 1 117 ALA n 1 118 ALA n 1 119 GLN n 1 120 ASP n 1 121 LEU n 1 122 ILE n 1 123 GLN n 1 124 CYS n 1 125 ALA n 1 126 VAL n 1 127 VAL n 1 128 GLU n 1 129 GLY n 1 130 TYR n 1 131 LEU n 1 132 THR n 1 133 PRO n 1 134 ASN n 1 135 TYR n 1 136 LEU n 1 137 LEU n 1 138 MET n 1 139 GLY n 1 140 HIS n 1 141 SER n 1 142 ASP n 1 143 VAL n 1 144 VAL n 1 145 ASN n 1 146 ILE n 1 147 LEU n 1 148 SER n 1 149 PRO n 1 150 GLY n 1 151 GLN n 1 152 ALA n 1 153 LEU n 1 154 TYR n 1 155 ASN n 1 156 ILE n 1 157 ILE n 1 158 SER n 1 159 THR n 1 160 TRP n 1 161 PRO n 1 162 HIS n 1 163 PHE n 1 164 LYS n 1 165 HIS n 2 1 ALA n 2 2 GMA n 2 3 LYS n 2 4 DAL n 2 5 DAL n 2 6 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 165 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'PGLYRP3, PGRPIA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector pT7-7 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'muramyl pentapeptide was synthesized chemically.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMU 'D-saccharide, beta linking' . 'N-acetyl-beta-muramic acid' 'N-acetyl-muramic acid; BETA-N-ACETYLMURAMIC ACID' 'C11 H19 N O8' 293.270 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GMA 'L-peptide linking' n '4-AMIDO-4-CARBAMOYL-BUTYRIC ACID' ? 'C5 H10 N2 O3' 146.144 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AMU 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc3 AMU 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 MurNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 177 177 VAL VAL A . n A 1 2 CYS 2 178 178 CYS CYS A . n A 1 3 PRO 3 179 179 PRO PRO A . n A 1 4 ASN 4 180 180 ASN ASN A . n A 1 5 ILE 5 181 181 ILE ILE A . n A 1 6 ILE 6 182 182 ILE ILE A . n A 1 7 LYS 7 183 183 LYS LYS A . n A 1 8 ARG 8 184 184 ARG ARG A . n A 1 9 SER 9 185 185 SER SER A . n A 1 10 ALA 10 186 186 ALA ALA A . n A 1 11 TRP 11 187 187 TRP TRP A . n A 1 12 GLU 12 188 188 GLU GLU A . n A 1 13 ALA 13 189 189 ALA ALA A . n A 1 14 ARG 14 190 190 ARG ARG A . n A 1 15 GLU 15 191 191 GLU GLU A . n A 1 16 THR 16 192 192 THR THR A . n A 1 17 HIS 17 193 193 HIS HIS A . n A 1 18 CYS 18 194 194 CYS CYS A . n A 1 19 PRO 19 195 195 PRO PRO A . n A 1 20 LYS 20 196 196 LYS LYS A . n A 1 21 MET 21 197 197 MET MET A . n A 1 22 ASN 22 198 198 ASN ASN A . n A 1 23 LEU 23 199 199 LEU LEU A . n A 1 24 PRO 24 200 200 PRO PRO A . n A 1 25 ALA 25 201 201 ALA ALA A . n A 1 26 LYS 26 202 202 LYS LYS A . n A 1 27 TYR 27 203 203 TYR TYR A . n A 1 28 VAL 28 204 204 VAL VAL A . n A 1 29 ILE 29 205 205 ILE ILE A . n A 1 30 ILE 30 206 206 ILE ILE A . n A 1 31 ILE 31 207 207 ILE ILE A . n A 1 32 HIS 32 208 208 HIS HIS A . n A 1 33 THR 33 209 209 THR THR A . n A 1 34 ALA 34 210 210 ALA ALA A . n A 1 35 GLY 35 211 211 GLY GLY A . n A 1 36 THR 36 212 212 THR THR A . n A 1 37 SER 37 213 213 SER SER A . n A 1 38 CYS 38 214 214 CYS CYS A . n A 1 39 THR 39 215 215 THR THR A . n A 1 40 VAL 40 216 216 VAL VAL A . n A 1 41 SER 41 217 217 SER SER A . n A 1 42 THR 42 218 218 THR THR A . n A 1 43 ASP 43 219 219 ASP ASP A . n A 1 44 CYS 44 220 220 CYS CYS A . n A 1 45 GLN 45 221 221 GLN GLN A . n A 1 46 THR 46 222 222 THR THR A . n A 1 47 VAL 47 223 223 VAL VAL A . n A 1 48 VAL 48 224 224 VAL VAL A . n A 1 49 ARG 49 225 225 ARG ARG A . n A 1 50 ASN 50 226 226 ASN ASN A . n A 1 51 ILE 51 227 227 ILE ILE A . n A 1 52 GLN 52 228 228 GLN GLN A . n A 1 53 SER 53 229 229 SER SER A . n A 1 54 PHE 54 230 230 PHE PHE A . n A 1 55 HIS 55 231 231 HIS HIS A . n A 1 56 MET 56 232 232 MET MET A . n A 1 57 ASP 57 233 233 ASP ASP A . n A 1 58 THR 58 234 234 THR THR A . n A 1 59 ARG 59 235 235 ARG ARG A . n A 1 60 ASN 60 236 236 ASN ASN A . n A 1 61 PHE 61 237 237 PHE PHE A . n A 1 62 CYS 62 238 238 CYS CYS A . n A 1 63 ASP 63 239 239 ASP ASP A . n A 1 64 ILE 64 240 240 ILE ILE A . n A 1 65 GLY 65 241 241 GLY GLY A . n A 1 66 TYR 66 242 242 TYR TYR A . n A 1 67 HIS 67 243 243 HIS HIS A . n A 1 68 PHE 68 244 244 PHE PHE A . n A 1 69 LEU 69 245 245 LEU LEU A . n A 1 70 VAL 70 246 246 VAL VAL A . n A 1 71 GLY 71 247 247 GLY GLY A . n A 1 72 GLN 72 248 248 GLN GLN A . n A 1 73 ASP 73 249 249 ASP ASP A . n A 1 74 GLY 74 250 250 GLY GLY A . n A 1 75 GLY 75 251 251 GLY GLY A . n A 1 76 VAL 76 252 252 VAL VAL A . n A 1 77 TYR 77 253 253 TYR TYR A . n A 1 78 GLU 78 254 254 GLU GLU A . n A 1 79 GLY 79 255 255 GLY GLY A . n A 1 80 VAL 80 256 256 VAL VAL A . n A 1 81 GLY 81 257 257 GLY GLY A . n A 1 82 TRP 82 258 258 TRP TRP A . n A 1 83 HIS 83 259 259 HIS HIS A . n A 1 84 ILE 84 260 260 ILE ILE A . n A 1 85 GLN 85 261 261 GLN GLN A . n A 1 86 GLY 86 262 262 GLY GLY A . n A 1 87 SER 87 263 263 SER SER A . n A 1 88 HIS 88 264 264 HIS HIS A . n A 1 89 THR 89 265 265 THR THR A . n A 1 90 TYR 90 266 266 TYR TYR A . n A 1 91 GLY 91 267 267 GLY GLY A . n A 1 92 PHE 92 268 268 PHE PHE A . n A 1 93 ASN 93 269 269 ASN ASN A . n A 1 94 ASP 94 270 270 ASP ASP A . n A 1 95 ILE 95 271 271 ILE ILE A . n A 1 96 ALA 96 272 272 ALA ALA A . n A 1 97 LEU 97 273 273 LEU LEU A . n A 1 98 GLY 98 274 274 GLY GLY A . n A 1 99 ILE 99 275 275 ILE ILE A . n A 1 100 ALA 100 276 276 ALA ALA A . n A 1 101 PHE 101 277 277 PHE PHE A . n A 1 102 ILE 102 278 278 ILE ILE A . n A 1 103 GLY 103 279 279 GLY GLY A . n A 1 104 TYR 104 280 280 TYR TYR A . n A 1 105 PHE 105 281 281 PHE PHE A . n A 1 106 VAL 106 282 282 VAL VAL A . n A 1 107 GLU 107 283 283 GLU GLU A . n A 1 108 LYS 108 284 284 LYS LYS A . n A 1 109 PRO 109 285 285 PRO PRO A . n A 1 110 PRO 110 286 286 PRO PRO A . n A 1 111 ASN 111 287 287 ASN ASN A . n A 1 112 ALA 112 288 288 ALA ALA A . n A 1 113 ALA 113 289 289 ALA ALA A . n A 1 114 ALA 114 290 290 ALA ALA A . n A 1 115 LEU 115 291 291 LEU LEU A . n A 1 116 GLU 116 292 292 GLU GLU A . n A 1 117 ALA 117 293 293 ALA ALA A . n A 1 118 ALA 118 294 294 ALA ALA A . n A 1 119 GLN 119 295 295 GLN GLN A . n A 1 120 ASP 120 296 296 ASP ASP A . n A 1 121 LEU 121 297 297 LEU LEU A . n A 1 122 ILE 122 298 298 ILE ILE A . n A 1 123 GLN 123 299 299 GLN GLN A . n A 1 124 CYS 124 300 300 CYS CYS A . n A 1 125 ALA 125 301 301 ALA ALA A . n A 1 126 VAL 126 302 302 VAL VAL A . n A 1 127 VAL 127 303 303 VAL VAL A . n A 1 128 GLU 128 304 304 GLU GLU A . n A 1 129 GLY 129 305 305 GLY GLY A . n A 1 130 TYR 130 306 306 TYR TYR A . n A 1 131 LEU 131 307 307 LEU LEU A . n A 1 132 THR 132 308 308 THR THR A . n A 1 133 PRO 133 309 309 PRO PRO A . n A 1 134 ASN 134 310 310 ASN ASN A . n A 1 135 TYR 135 311 311 TYR TYR A . n A 1 136 LEU 136 312 312 LEU LEU A . n A 1 137 LEU 137 313 313 LEU LEU A . n A 1 138 MET 138 314 314 MET MET A . n A 1 139 GLY 139 315 315 GLY GLY A . n A 1 140 HIS 140 316 316 HIS HIS A . n A 1 141 SER 141 317 317 SER SER A . n A 1 142 ASP 142 318 318 ASP ASP A . n A 1 143 VAL 143 319 319 VAL VAL A . n A 1 144 VAL 144 320 320 VAL VAL A . n A 1 145 ASN 145 321 321 ASN ASN A . n A 1 146 ILE 146 322 322 ILE ILE A . n A 1 147 LEU 147 323 323 LEU LEU A . n A 1 148 SER 148 324 324 SER SER A . n A 1 149 PRO 149 325 325 PRO PRO A . n A 1 150 GLY 150 326 326 GLY GLY A . n A 1 151 GLN 151 327 327 GLN GLN A . n A 1 152 ALA 152 328 328 ALA ALA A . n A 1 153 LEU 153 329 329 LEU LEU A . n A 1 154 TYR 154 330 330 TYR TYR A . n A 1 155 ASN 155 331 331 ASN ASN A . n A 1 156 ILE 156 332 332 ILE ILE A . n A 1 157 ILE 157 333 333 ILE ILE A . n A 1 158 SER 158 334 334 SER SER A . n A 1 159 THR 159 335 335 THR THR A . n A 1 160 TRP 160 336 336 TRP TRP A . n A 1 161 PRO 161 337 337 PRO PRO A . n A 1 162 HIS 162 338 338 HIS HIS A . n A 1 163 PHE 163 339 339 PHE PHE A . n A 1 164 LYS 164 340 340 LYS LYS A . n A 1 165 HIS 165 341 341 HIS HIS A . n B 1 1 VAL 1 177 177 VAL VAL B . n B 1 2 CYS 2 178 178 CYS CYS B . n B 1 3 PRO 3 179 179 PRO PRO B . n B 1 4 ASN 4 180 180 ASN ASN B . n B 1 5 ILE 5 181 181 ILE ILE B . n B 1 6 ILE 6 182 182 ILE ILE B . n B 1 7 LYS 7 183 183 LYS LYS B . n B 1 8 ARG 8 184 184 ARG ARG B . n B 1 9 SER 9 185 185 SER SER B . n B 1 10 ALA 10 186 186 ALA ALA B . n B 1 11 TRP 11 187 187 TRP TRP B . n B 1 12 GLU 12 188 188 GLU GLU B . n B 1 13 ALA 13 189 189 ALA ALA B . n B 1 14 ARG 14 190 190 ARG ARG B . n B 1 15 GLU 15 191 191 GLU GLU B . n B 1 16 THR 16 192 192 THR THR B . n B 1 17 HIS 17 193 193 HIS HIS B . n B 1 18 CYS 18 194 194 CYS CYS B . n B 1 19 PRO 19 195 195 PRO PRO B . n B 1 20 LYS 20 196 196 LYS LYS B . n B 1 21 MET 21 197 197 MET MET B . n B 1 22 ASN 22 198 198 ASN ASN B . n B 1 23 LEU 23 199 199 LEU LEU B . n B 1 24 PRO 24 200 200 PRO PRO B . n B 1 25 ALA 25 201 201 ALA ALA B . n B 1 26 LYS 26 202 202 LYS LYS B . n B 1 27 TYR 27 203 203 TYR TYR B . n B 1 28 VAL 28 204 204 VAL VAL B . n B 1 29 ILE 29 205 205 ILE ILE B . n B 1 30 ILE 30 206 206 ILE ILE B . n B 1 31 ILE 31 207 207 ILE ILE B . n B 1 32 HIS 32 208 208 HIS HIS B . n B 1 33 THR 33 209 209 THR THR B . n B 1 34 ALA 34 210 210 ALA ALA B . n B 1 35 GLY 35 211 211 GLY GLY B . n B 1 36 THR 36 212 212 THR THR B . n B 1 37 SER 37 213 213 SER SER B . n B 1 38 CYS 38 214 214 CYS CYS B . n B 1 39 THR 39 215 215 THR THR B . n B 1 40 VAL 40 216 216 VAL VAL B . n B 1 41 SER 41 217 217 SER SER B . n B 1 42 THR 42 218 218 THR THR B . n B 1 43 ASP 43 219 219 ASP ASP B . n B 1 44 CYS 44 220 220 CYS CYS B . n B 1 45 GLN 45 221 221 GLN GLN B . n B 1 46 THR 46 222 222 THR THR B . n B 1 47 VAL 47 223 223 VAL VAL B . n B 1 48 VAL 48 224 224 VAL VAL B . n B 1 49 ARG 49 225 225 ARG ARG B . n B 1 50 ASN 50 226 226 ASN ASN B . n B 1 51 ILE 51 227 227 ILE ILE B . n B 1 52 GLN 52 228 228 GLN GLN B . n B 1 53 SER 53 229 229 SER SER B . n B 1 54 PHE 54 230 230 PHE PHE B . n B 1 55 HIS 55 231 231 HIS HIS B . n B 1 56 MET 56 232 232 MET MET B . n B 1 57 ASP 57 233 233 ASP ASP B . n B 1 58 THR 58 234 234 THR THR B . n B 1 59 ARG 59 235 235 ARG ARG B . n B 1 60 ASN 60 236 236 ASN ASN B . n B 1 61 PHE 61 237 237 PHE PHE B . n B 1 62 CYS 62 238 238 CYS CYS B . n B 1 63 ASP 63 239 239 ASP ASP B . n B 1 64 ILE 64 240 240 ILE ILE B . n B 1 65 GLY 65 241 241 GLY GLY B . n B 1 66 TYR 66 242 242 TYR TYR B . n B 1 67 HIS 67 243 243 HIS HIS B . n B 1 68 PHE 68 244 244 PHE PHE B . n B 1 69 LEU 69 245 245 LEU LEU B . n B 1 70 VAL 70 246 246 VAL VAL B . n B 1 71 GLY 71 247 247 GLY GLY B . n B 1 72 GLN 72 248 248 GLN GLN B . n B 1 73 ASP 73 249 249 ASP ASP B . n B 1 74 GLY 74 250 250 GLY GLY B . n B 1 75 GLY 75 251 251 GLY GLY B . n B 1 76 VAL 76 252 252 VAL VAL B . n B 1 77 TYR 77 253 253 TYR TYR B . n B 1 78 GLU 78 254 254 GLU GLU B . n B 1 79 GLY 79 255 255 GLY GLY B . n B 1 80 VAL 80 256 256 VAL VAL B . n B 1 81 GLY 81 257 257 GLY GLY B . n B 1 82 TRP 82 258 258 TRP TRP B . n B 1 83 HIS 83 259 259 HIS HIS B . n B 1 84 ILE 84 260 260 ILE ILE B . n B 1 85 GLN 85 261 261 GLN GLN B . n B 1 86 GLY 86 262 262 GLY GLY B . n B 1 87 SER 87 263 263 SER SER B . n B 1 88 HIS 88 264 264 HIS HIS B . n B 1 89 THR 89 265 265 THR THR B . n B 1 90 TYR 90 266 266 TYR TYR B . n B 1 91 GLY 91 267 267 GLY GLY B . n B 1 92 PHE 92 268 268 PHE PHE B . n B 1 93 ASN 93 269 269 ASN ASN B . n B 1 94 ASP 94 270 270 ASP ASP B . n B 1 95 ILE 95 271 271 ILE ILE B . n B 1 96 ALA 96 272 272 ALA ALA B . n B 1 97 LEU 97 273 273 LEU LEU B . n B 1 98 GLY 98 274 274 GLY GLY B . n B 1 99 ILE 99 275 275 ILE ILE B . n B 1 100 ALA 100 276 276 ALA ALA B . n B 1 101 PHE 101 277 277 PHE PHE B . n B 1 102 ILE 102 278 278 ILE ILE B . n B 1 103 GLY 103 279 279 GLY GLY B . n B 1 104 TYR 104 280 280 TYR TYR B . n B 1 105 PHE 105 281 281 PHE PHE B . n B 1 106 VAL 106 282 282 VAL VAL B . n B 1 107 GLU 107 283 283 GLU GLU B . n B 1 108 LYS 108 284 284 LYS LYS B . n B 1 109 PRO 109 285 285 PRO PRO B . n B 1 110 PRO 110 286 286 PRO PRO B . n B 1 111 ASN 111 287 287 ASN ASN B . n B 1 112 ALA 112 288 288 ALA ALA B . n B 1 113 ALA 113 289 289 ALA ALA B . n B 1 114 ALA 114 290 290 ALA ALA B . n B 1 115 LEU 115 291 291 LEU LEU B . n B 1 116 GLU 116 292 292 GLU GLU B . n B 1 117 ALA 117 293 293 ALA ALA B . n B 1 118 ALA 118 294 294 ALA ALA B . n B 1 119 GLN 119 295 295 GLN GLN B . n B 1 120 ASP 120 296 296 ASP ASP B . n B 1 121 LEU 121 297 297 LEU LEU B . n B 1 122 ILE 122 298 298 ILE ILE B . n B 1 123 GLN 123 299 299 GLN GLN B . n B 1 124 CYS 124 300 300 CYS CYS B . n B 1 125 ALA 125 301 301 ALA ALA B . n B 1 126 VAL 126 302 302 VAL VAL B . n B 1 127 VAL 127 303 303 VAL VAL B . n B 1 128 GLU 128 304 304 GLU GLU B . n B 1 129 GLY 129 305 305 GLY GLY B . n B 1 130 TYR 130 306 306 TYR TYR B . n B 1 131 LEU 131 307 307 LEU LEU B . n B 1 132 THR 132 308 308 THR THR B . n B 1 133 PRO 133 309 309 PRO PRO B . n B 1 134 ASN 134 310 310 ASN ASN B . n B 1 135 TYR 135 311 311 TYR TYR B . n B 1 136 LEU 136 312 312 LEU LEU B . n B 1 137 LEU 137 313 313 LEU LEU B . n B 1 138 MET 138 314 314 MET MET B . n B 1 139 GLY 139 315 315 GLY GLY B . n B 1 140 HIS 140 316 316 HIS HIS B . n B 1 141 SER 141 317 317 SER SER B . n B 1 142 ASP 142 318 318 ASP ASP B . n B 1 143 VAL 143 319 319 VAL VAL B . n B 1 144 VAL 144 320 320 VAL VAL B . n B 1 145 ASN 145 321 321 ASN ASN B . n B 1 146 ILE 146 322 322 ILE ILE B . n B 1 147 LEU 147 323 323 LEU LEU B . n B 1 148 SER 148 324 324 SER SER B . n B 1 149 PRO 149 325 325 PRO PRO B . n B 1 150 GLY 150 326 326 GLY GLY B . n B 1 151 GLN 151 327 327 GLN GLN B . n B 1 152 ALA 152 328 328 ALA ALA B . n B 1 153 LEU 153 329 329 LEU LEU B . n B 1 154 TYR 154 330 330 TYR TYR B . n B 1 155 ASN 155 331 331 ASN ASN B . n B 1 156 ILE 156 332 332 ILE ILE B . n B 1 157 ILE 157 333 333 ILE ILE B . n B 1 158 SER 158 334 334 SER SER B . n B 1 159 THR 159 335 335 THR THR B . n B 1 160 TRP 160 336 336 TRP TRP B . n B 1 161 PRO 161 337 337 PRO PRO B . n B 1 162 HIS 162 338 338 HIS HIS B . n B 1 163 PHE 163 339 339 PHE PHE B . n B 1 164 LYS 164 340 340 LYS LYS B . n B 1 165 HIS 165 341 341 HIS HIS B . n C 2 1 ALA 1 884 884 ALA ALA C . n C 2 2 GMA 2 885 885 GMA GMA C . n C 2 3 LYS 3 886 886 LYS LYS C . n C 2 4 DAL 4 887 887 DAL DAL C . n C 2 5 DAL 5 888 888 DAL DAL C . n C 2 6 NH2 6 889 888 NH2 DAL C . n D 2 1 ALA 1 995 995 ALA ALA D . n D 2 2 GMA 2 996 996 GMA GMA D . n D 2 3 LYS 3 997 997 LYS LYS D . n D 2 4 DAL 4 998 998 DAL DAL D . n D 2 5 DAL 5 999 999 DAL DAL D . n D 2 6 NH2 6 1000 999 NH2 DAL D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 1 900 900 SO4 SO4 A . F 3 SO4 1 901 901 SO4 SO4 B . G 4 AMU 1 901 883 AMU AMU C . H 4 AMU 1 1101 994 AMU AMU D . I 5 HOH 1 1001 21 HOH HOH A . I 5 HOH 2 1002 12 HOH HOH A . I 5 HOH 3 1003 8 HOH HOH A . I 5 HOH 4 1004 143 HOH HOH A . I 5 HOH 5 1005 140 HOH HOH A . I 5 HOH 6 1006 206 HOH HOH A . I 5 HOH 7 1007 1 HOH HOH A . I 5 HOH 8 1008 19 HOH HOH A . I 5 HOH 9 1009 97 HOH HOH A . I 5 HOH 10 1010 63 HOH HOH A . I 5 HOH 11 1011 211 HOH HOH A . I 5 HOH 12 1012 6 HOH HOH A . I 5 HOH 13 1013 64 HOH HOH A . I 5 HOH 14 1014 192 HOH HOH A . I 5 HOH 15 1015 133 HOH HOH A . I 5 HOH 16 1016 74 HOH HOH A . I 5 HOH 17 1017 66 HOH HOH A . I 5 HOH 18 1018 42 HOH HOH A . I 5 HOH 19 1019 164 HOH HOH A . I 5 HOH 20 1020 141 HOH HOH A . I 5 HOH 21 1021 108 HOH HOH A . I 5 HOH 22 1022 13 HOH HOH A . I 5 HOH 23 1023 160 HOH HOH A . I 5 HOH 24 1024 2 HOH HOH A . I 5 HOH 25 1025 89 HOH HOH A . I 5 HOH 26 1026 112 HOH HOH A . I 5 HOH 27 1027 86 HOH HOH A . I 5 HOH 28 1028 107 HOH HOH A . I 5 HOH 29 1029 111 HOH HOH A . I 5 HOH 30 1030 142 HOH HOH A . I 5 HOH 31 1031 14 HOH HOH A . I 5 HOH 32 1032 55 HOH HOH A . I 5 HOH 33 1033 22 HOH HOH A . I 5 HOH 34 1034 157 HOH HOH A . I 5 HOH 35 1035 57 HOH HOH A . I 5 HOH 36 1036 207 HOH HOH A . I 5 HOH 37 1037 11 HOH HOH A . I 5 HOH 38 1038 20 HOH HOH A . I 5 HOH 39 1039 162 HOH HOH A . I 5 HOH 40 1040 4 HOH HOH A . I 5 HOH 41 1041 29 HOH HOH A . I 5 HOH 42 1042 156 HOH HOH A . I 5 HOH 43 1043 58 HOH HOH A . I 5 HOH 44 1044 85 HOH HOH A . I 5 HOH 45 1045 43 HOH HOH A . I 5 HOH 46 1046 138 HOH HOH A . I 5 HOH 47 1047 101 HOH HOH A . I 5 HOH 48 1048 44 HOH HOH A . I 5 HOH 49 1049 102 HOH HOH A . I 5 HOH 50 1050 174 HOH HOH A . I 5 HOH 51 1051 9 HOH HOH A . I 5 HOH 52 1052 169 HOH HOH A . I 5 HOH 53 1053 60 HOH HOH A . I 5 HOH 54 1054 100 HOH HOH A . I 5 HOH 55 1055 10 HOH HOH A . I 5 HOH 56 1056 82 HOH HOH A . I 5 HOH 57 1057 59 HOH HOH A . I 5 HOH 58 1058 48 HOH HOH A . I 5 HOH 59 1059 7 HOH HOH A . I 5 HOH 60 1060 83 HOH HOH A . I 5 HOH 61 1061 87 HOH HOH A . I 5 HOH 62 1062 144 HOH HOH A . I 5 HOH 63 1063 81 HOH HOH A . I 5 HOH 64 1064 62 HOH HOH A . I 5 HOH 65 1065 208 HOH HOH A . I 5 HOH 66 1066 158 HOH HOH A . I 5 HOH 67 1067 106 HOH HOH A . I 5 HOH 68 1068 200 HOH HOH A . I 5 HOH 69 1069 122 HOH HOH A . I 5 HOH 70 1070 90 HOH HOH A . I 5 HOH 71 1071 84 HOH HOH A . I 5 HOH 72 1072 98 HOH HOH A . I 5 HOH 73 1073 225 HOH HOH A . I 5 HOH 74 1074 193 HOH HOH A . I 5 HOH 75 1075 153 HOH HOH A . I 5 HOH 76 1076 67 HOH HOH A . I 5 HOH 77 1077 223 HOH HOH A . I 5 HOH 78 1078 104 HOH HOH A . I 5 HOH 79 1079 175 HOH HOH A . I 5 HOH 80 1080 18 HOH HOH A . I 5 HOH 81 1081 110 HOH HOH A . I 5 HOH 82 1082 61 HOH HOH A . I 5 HOH 83 1083 73 HOH HOH A . I 5 HOH 84 1084 99 HOH HOH A . I 5 HOH 85 1085 189 HOH HOH A . I 5 HOH 86 1086 130 HOH HOH A . I 5 HOH 87 1087 173 HOH HOH A . I 5 HOH 88 1088 132 HOH HOH A . I 5 HOH 89 1089 227 HOH HOH A . I 5 HOH 90 1090 166 HOH HOH A . I 5 HOH 91 1091 159 HOH HOH A . I 5 HOH 92 1092 109 HOH HOH A . I 5 HOH 93 1093 103 HOH HOH A . I 5 HOH 94 1094 134 HOH HOH A . I 5 HOH 95 1095 187 HOH HOH A . I 5 HOH 96 1096 5 HOH HOH A . I 5 HOH 97 1097 185 HOH HOH A . I 5 HOH 98 1098 209 HOH HOH A . I 5 HOH 99 1099 176 HOH HOH A . I 5 HOH 100 1100 172 HOH HOH A . J 5 HOH 1 1001 88 HOH HOH B . J 5 HOH 2 1002 26 HOH HOH B . J 5 HOH 3 1003 114 HOH HOH B . J 5 HOH 4 1004 220 HOH HOH B . J 5 HOH 5 1005 161 HOH HOH B . J 5 HOH 6 1006 79 HOH HOH B . J 5 HOH 7 1007 70 HOH HOH B . J 5 HOH 8 1008 78 HOH HOH B . J 5 HOH 9 1009 47 HOH HOH B . J 5 HOH 10 1010 80 HOH HOH B . J 5 HOH 11 1011 65 HOH HOH B . J 5 HOH 12 1012 201 HOH HOH B . J 5 HOH 13 1013 91 HOH HOH B . J 5 HOH 14 1014 151 HOH HOH B . J 5 HOH 15 1015 146 HOH HOH B . J 5 HOH 16 1016 41 HOH HOH B . J 5 HOH 17 1017 56 HOH HOH B . J 5 HOH 18 1018 199 HOH HOH B . J 5 HOH 19 1019 196 HOH HOH B . J 5 HOH 20 1020 214 HOH HOH B . J 5 HOH 21 1021 35 HOH HOH B . J 5 HOH 22 1022 116 HOH HOH B . J 5 HOH 23 1023 46 HOH HOH B . J 5 HOH 24 1024 168 HOH HOH B . J 5 HOH 25 1025 177 HOH HOH B . J 5 HOH 26 1026 17 HOH HOH B . J 5 HOH 27 1027 212 HOH HOH B . J 5 HOH 28 1028 215 HOH HOH B . J 5 HOH 29 1029 30 HOH HOH B . J 5 HOH 30 1030 121 HOH HOH B . J 5 HOH 31 1031 197 HOH HOH B . J 5 HOH 32 1032 191 HOH HOH B . J 5 HOH 33 1033 49 HOH HOH B . J 5 HOH 34 1034 16 HOH HOH B . J 5 HOH 35 1035 31 HOH HOH B . J 5 HOH 36 1036 32 HOH HOH B . J 5 HOH 37 1037 178 HOH HOH B . J 5 HOH 38 1038 221 HOH HOH B . J 5 HOH 39 1039 50 HOH HOH B . J 5 HOH 40 1040 113 HOH HOH B . J 5 HOH 41 1041 51 HOH HOH B . J 5 HOH 42 1042 40 HOH HOH B . J 5 HOH 43 1043 131 HOH HOH B . J 5 HOH 44 1044 95 HOH HOH B . J 5 HOH 45 1045 127 HOH HOH B . J 5 HOH 46 1046 213 HOH HOH B . J 5 HOH 47 1047 71 HOH HOH B . J 5 HOH 48 1048 54 HOH HOH B . J 5 HOH 49 1049 93 HOH HOH B . J 5 HOH 50 1050 23 HOH HOH B . J 5 HOH 51 1051 152 HOH HOH B . J 5 HOH 52 1052 53 HOH HOH B . J 5 HOH 53 1053 39 HOH HOH B . J 5 HOH 54 1054 155 HOH HOH B . J 5 HOH 55 1055 216 HOH HOH B . J 5 HOH 56 1056 15 HOH HOH B . J 5 HOH 57 1057 3 HOH HOH B . J 5 HOH 58 1058 117 HOH HOH B . J 5 HOH 59 1059 195 HOH HOH B . J 5 HOH 60 1060 92 HOH HOH B . J 5 HOH 61 1061 194 HOH HOH B . J 5 HOH 62 1062 94 HOH HOH B . J 5 HOH 63 1063 52 HOH HOH B . J 5 HOH 64 1064 128 HOH HOH B . J 5 HOH 65 1065 38 HOH HOH B . J 5 HOH 66 1066 24 HOH HOH B . J 5 HOH 67 1067 171 HOH HOH B . J 5 HOH 68 1068 27 HOH HOH B . J 5 HOH 69 1069 226 HOH HOH B . J 5 HOH 70 1070 217 HOH HOH B . J 5 HOH 71 1071 198 HOH HOH B . J 5 HOH 72 1072 34 HOH HOH B . J 5 HOH 73 1073 25 HOH HOH B . J 5 HOH 74 1074 119 HOH HOH B . J 5 HOH 75 1075 125 HOH HOH B . J 5 HOH 76 1076 210 HOH HOH B . J 5 HOH 77 1077 77 HOH HOH B . J 5 HOH 78 1078 145 HOH HOH B . J 5 HOH 79 1079 180 HOH HOH B . J 5 HOH 80 1080 28 HOH HOH B . J 5 HOH 81 1081 69 HOH HOH B . J 5 HOH 82 1082 126 HOH HOH B . J 5 HOH 83 1083 170 HOH HOH B . J 5 HOH 84 1084 75 HOH HOH B . J 5 HOH 85 1085 229 HOH HOH B . J 5 HOH 86 1086 149 HOH HOH B . J 5 HOH 87 1087 68 HOH HOH B . J 5 HOH 88 1088 76 HOH HOH B . J 5 HOH 89 1089 188 HOH HOH B . J 5 HOH 90 1090 179 HOH HOH B . J 5 HOH 91 1091 190 HOH HOH B . J 5 HOH 92 1092 123 HOH HOH B . J 5 HOH 93 1093 150 HOH HOH B . J 5 HOH 94 1094 72 HOH HOH B . J 5 HOH 95 1095 184 HOH HOH B . J 5 HOH 96 1096 163 HOH HOH B . J 5 HOH 97 1097 96 HOH HOH B . J 5 HOH 98 1098 147 HOH HOH B . J 5 HOH 99 1099 136 HOH HOH B . J 5 HOH 100 1100 218 HOH HOH B . J 5 HOH 101 1101 202 HOH HOH B . J 5 HOH 102 1102 129 HOH HOH B . J 5 HOH 103 1103 167 HOH HOH B . J 5 HOH 104 1104 148 HOH HOH B . J 5 HOH 105 1105 231 HOH HOH B . J 5 HOH 106 1106 204 HOH HOH B . J 5 HOH 107 1107 222 HOH HOH B . J 5 HOH 108 1108 124 HOH HOH B . J 5 HOH 109 1109 135 HOH HOH B . J 5 HOH 110 1110 137 HOH HOH B . J 5 HOH 111 1111 165 HOH HOH B . J 5 HOH 112 1112 120 HOH HOH B . J 5 HOH 113 1113 203 HOH HOH B . J 5 HOH 114 1114 219 HOH HOH B . J 5 HOH 115 1115 182 HOH HOH B . J 5 HOH 116 1116 228 HOH HOH B . J 5 HOH 117 1117 224 HOH HOH B . K 5 HOH 1 1001 37 HOH HOH C . K 5 HOH 2 1002 186 HOH HOH C . K 5 HOH 3 1003 205 HOH HOH C . K 5 HOH 4 1004 105 HOH HOH C . K 5 HOH 5 1005 139 HOH HOH C . L 5 HOH 1 1201 33 HOH HOH D . L 5 HOH 2 1202 115 HOH HOH D . L 5 HOH 3 1203 183 HOH HOH D . L 5 HOH 4 1204 36 HOH HOH D . L 5 HOH 5 1205 181 HOH HOH D . L 5 HOH 6 1206 45 HOH HOH D . L 5 HOH 7 1207 230 HOH HOH D . L 5 HOH 8 1208 154 HOH HOH D . L 5 HOH 9 1209 118 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CrystalClear 'data reduction' '(MSC/RIGAKU)' ? 2 CrystalClear 'data scaling' '(MSC/RIGAKU)' ? 3 AMoRE phasing . ? 4 # _cell.entry_id 2APH _cell.length_a 37.860 _cell.length_b 58.630 _cell.length_c 70.400 _cell.angle_alpha 90.00 _cell.angle_beta 93.65 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2APH _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2APH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.8 _exptl_crystal.density_percent_sol 31.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details 'PEG2000 MME, Nickel sulfate, Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 165 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2005-01-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.5418 1.0 2 1.54178 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type OTHER _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list 1.54178 # _reflns.entry_id 2APH _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 37.8 _reflns.d_resolution_high 2.0 _reflns.number_obs 20828 _reflns.number_all 20828 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.6 _reflns.B_iso_Wilson_estimate 31.2 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2APH _refine.ls_number_reflns_obs 17999 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1122082.70 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.78 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.227 _refine.ls_R_factor_all 0.231 _refine.ls_R_factor_R_work 0.227 _refine.ls_R_factor_R_free 0.267 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.0 _refine.ls_number_reflns_R_free 715 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 35.5 _refine.aniso_B[1][1] 5.64 _refine.aniso_B[2][2] 2.58 _refine.aniso_B[3][3] -8.22 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -12.76 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.311407 _refine.solvent_model_param_bsol 50.7468 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB Entry: 1SK3' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2APH _refine_analyze.Luzzati_coordinate_error_obs 0.30 _refine_analyze.Luzzati_sigma_a_obs 0.38 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.36 _refine_analyze.Luzzati_sigma_a_free 0.41 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2678 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 231 _refine_hist.number_atoms_total 2919 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 37.78 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.78 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 2863 _refine_ls_shell.R_factor_R_work 0.339 _refine_ls_shell.percent_reflns_obs 99.6 _refine_ls_shell.R_factor_R_free 0.395 _refine_ls_shell.R_factor_R_free_error 0.036 _refine_ls_shell.percent_reflns_R_free 4.1 _refine_ls_shell.number_reflns_R_free 123 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 mpp.par mpp.top 'X-RAY DIFFRACTION' 3 water.param ? 'X-RAY DIFFRACTION' 4 ion.param ? 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2APH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2APH _struct.title 'Crystal structure of human PGRP-IalphaC in complex with muramyl pentapeptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2APH _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'PGRPs, Lys-type, peptidoglycan, complex, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP PGRP3_HUMAN Q96LB9 ? 1 ;VCPNIIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGV GWHIQGSHTYGFNDIALGIAFIGYFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMGHSDVVNILSPGQALYNIISTW PHFKH ; 177 2 PDB 2APH 2APH ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2APH A 1 ? 165 ? Q96LB9 177 ? 341 ? 177 341 2 1 2APH B 1 ? 165 ? Q96LB9 177 ? 341 ? 177 341 3 2 2APH C 1 ? 6 ? 2APH 884 ? 889 ? 884 889 4 2 2APH D 1 ? 6 ? 2APH 995 ? 1000 ? 995 1000 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS dimeric 2 2 author_and_software_defined_assembly PQS dimeric 2 3 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 4670 ? 3 MORE -41 ? 3 'SSA (A^2)' 14850 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,G,I,K 2 1 B,D,F,H,J,L 3 1 A,C,E,G,I,K 3 2 B,D,F,H,J,L # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 33.3782347555 0.0000000000 1.0000000000 0.0000000000 29.3150000000 0.0000000000 0.0000000000 -1.0000000000 70.2571973558 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 40 ? THR A 58 ? VAL A 216 THR A 234 1 ? 19 HELX_P HELX_P2 2 ASN A 111 ? GLU A 128 ? ASN A 287 GLU A 304 1 ? 18 HELX_P HELX_P3 3 HIS A 140 ? VAL A 144 ? HIS A 316 VAL A 320 1 ? 5 HELX_P HELX_P4 4 GLY A 150 ? SER A 158 ? GLY A 326 SER A 334 1 ? 9 HELX_P HELX_P5 5 VAL B 40 ? THR B 58 ? VAL B 216 THR B 234 1 ? 19 HELX_P HELX_P6 6 ASN B 111 ? GLU B 128 ? ASN B 287 GLU B 304 1 ? 18 HELX_P HELX_P7 7 HIS B 140 ? VAL B 144 ? HIS B 316 VAL B 320 1 ? 5 HELX_P HELX_P8 8 GLY B 150 ? SER B 158 ? GLY B 326 SER B 334 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 124 SG ? ? A CYS 178 A CYS 300 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf2 disulf ? ? A CYS 18 SG ? ? ? 1_555 A CYS 62 SG ? ? A CYS 194 A CYS 238 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf3 disulf ? ? A CYS 38 SG ? ? ? 1_555 A CYS 44 SG ? ? A CYS 214 A CYS 220 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf4 disulf ? ? B CYS 2 SG ? ? ? 1_555 B CYS 124 SG ? ? B CYS 178 B CYS 300 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf5 disulf ? ? B CYS 18 SG ? ? ? 1_555 B CYS 62 SG ? ? B CYS 194 B CYS 238 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf6 disulf ? ? B CYS 38 SG ? ? ? 1_555 B CYS 44 SG ? ? B CYS 214 B CYS 220 1_555 ? ? ? ? ? ? ? 2.032 ? ? covale1 covale both ? C ALA 1 C ? ? ? 1_555 C GMA 2 N ? ? C ALA 884 C GMA 885 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale one ? C ALA 1 N ? ? ? 1_555 G AMU . C10 ? ? C ALA 884 C AMU 901 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? C GMA 2 C ? ? ? 1_555 C LYS 3 N ? ? C GMA 885 C LYS 886 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? C LYS 3 C ? ? ? 1_555 C DAL 4 N ? ? C LYS 886 C DAL 887 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? C DAL 4 C ? ? ? 1_555 C DAL 5 N ? ? C DAL 887 C DAL 888 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? C DAL 5 C ? ? ? 1_555 C NH2 6 N ? ? C DAL 888 C NH2 889 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale7 covale both ? D ALA 1 C ? ? ? 1_555 D GMA 2 N ? ? D ALA 995 D GMA 996 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale8 covale one ? D ALA 1 N ? ? ? 1_555 H AMU . C10 ? ? D ALA 995 D AMU 1101 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale9 covale both ? D GMA 2 C ? ? ? 1_555 D LYS 3 N ? ? D GMA 996 D LYS 997 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? D LYS 3 C ? ? ? 1_555 D DAL 4 N ? ? D LYS 997 D DAL 998 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale11 covale both ? D DAL 4 C ? ? ? 1_555 D DAL 5 N ? ? D DAL 998 D DAL 999 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale12 covale both ? D DAL 5 C ? ? ? 1_555 D NH2 6 N ? ? D DAL 999 D NH2 1000 1_555 ? ? ? ? ? ? ? 1.330 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 23 A . ? LEU 199 A PRO 24 A ? PRO 200 A 1 0.03 2 SER 148 A . ? SER 324 A PRO 149 A ? PRO 325 A 1 -0.02 3 LEU 23 B . ? LEU 199 B PRO 24 B ? PRO 200 B 1 0.06 4 SER 148 B . ? SER 324 B PRO 149 B ? PRO 325 B 1 0.40 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 76 ? GLU A 78 ? VAL A 252 GLU A 254 A 2 PHE A 68 ? VAL A 70 ? PHE A 244 VAL A 246 A 3 ALA A 96 ? PHE A 101 ? ALA A 272 PHE A 277 A 4 ALA A 25 ? HIS A 32 ? ALA A 201 HIS A 208 A 5 LEU A 131 ? GLY A 139 ? LEU A 307 GLY A 315 B 1 VAL B 76 ? GLU B 78 ? VAL B 252 GLU B 254 B 2 PHE B 68 ? VAL B 70 ? PHE B 244 VAL B 246 B 3 ALA B 96 ? PHE B 101 ? ALA B 272 PHE B 277 B 4 ALA B 25 ? HIS B 32 ? ALA B 201 HIS B 208 B 5 LEU B 131 ? GLY B 139 ? LEU B 307 GLY B 315 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 77 ? O TYR A 253 N LEU A 69 ? N LEU A 245 A 2 3 N VAL A 70 ? N VAL A 246 O ALA A 100 ? O ALA A 276 A 3 4 O PHE A 101 ? O PHE A 277 N ILE A 31 ? N ILE A 207 A 4 5 N VAL A 28 ? N VAL A 204 O MET A 138 ? O MET A 314 B 1 2 O TYR B 77 ? O TYR B 253 N LEU B 69 ? N LEU B 245 B 2 3 N PHE B 68 ? N PHE B 244 O ALA B 100 ? O ALA B 276 B 3 4 O LEU B 97 ? O LEU B 273 N ILE B 29 ? N ILE B 205 B 4 5 N VAL B 28 ? N VAL B 204 O MET B 138 ? O MET B 314 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O4 B SO4 901 ? ? O B HOH 1001 ? ? 2.12 2 1 NE2 B HIS 341 ? ? O4 B SO4 901 ? ? 2.16 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 GMA _pdbx_validate_rmsd_angle.auth_seq_id_1 885 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 GMA _pdbx_validate_rmsd_angle.auth_seq_id_2 885 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 LYS _pdbx_validate_rmsd_angle.auth_seq_id_3 886 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 131.14 _pdbx_validate_rmsd_angle.angle_target_value 117.20 _pdbx_validate_rmsd_angle.angle_deviation 13.94 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.20 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 181 ? ? 79.14 111.00 2 1 GLN A 248 ? ? -68.69 3.93 3 1 SER A 263 ? ? -144.14 54.30 4 1 TYR A 311 ? ? -48.43 157.61 5 1 HIS A 338 ? ? 75.45 -7.48 6 1 ILE B 181 ? ? 77.66 99.13 7 1 ASP B 239 ? ? -162.18 -168.99 8 1 SER B 263 ? ? -147.91 48.58 9 1 SER B 324 ? ? -170.72 144.75 10 1 HIS B 338 ? ? 75.94 -6.56 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CA ? C GMA 885 ? 'WRONG HAND' . 2 1 CA ? D GMA 996 ? 'WRONG HAND' . 3 1 C1 ? C AMU 901 ? 'WRONG HAND' . 4 1 C1 ? D AMU 1101 ? 'WRONG HAND' . # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id GMA _pdbx_validate_main_chain_plane.auth_asym_id C _pdbx_validate_main_chain_plane.auth_seq_id 885 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -10.62 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C GMA 2 C GMA 885 ? GLU '4-AMIDO-4-CARBAMOYL-BUTYRIC ACID' 2 C DAL 4 C DAL 887 ? ALA D-ALANINE 3 C DAL 5 C DAL 888 ? ALA D-ALANINE 4 D GMA 2 D GMA 996 ? GLU '4-AMIDO-4-CARBAMOYL-BUTYRIC ACID' 5 D DAL 4 D DAL 998 ? ALA D-ALANINE 6 D DAL 5 D DAL 999 ? ALA D-ALANINE # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 1100 ? 7.21 . 2 1 O ? B HOH 1114 ? 5.82 . 3 1 O ? B HOH 1115 ? 6.55 . 4 1 O ? B HOH 1116 ? 6.65 . 5 1 O ? B HOH 1117 ? 7.33 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 AMU C1 C N R 14 AMU C2 C N R 15 AMU C3 C N R 16 AMU C4 C N S 17 AMU C5 C N R 18 AMU C6 C N N 19 AMU C7 C N N 20 AMU C8 C N N 21 AMU C9 C N R 22 AMU C10 C N N 23 AMU C11 C N N 24 AMU O1 O N N 25 AMU O3 O N N 26 AMU O4 O N N 27 AMU O5 O N N 28 AMU O6 O N N 29 AMU O7 O N N 30 AMU O10 O N N 31 AMU O11 O N N 32 AMU N2 N N N 33 AMU H1 H N N 34 AMU H2 H N N 35 AMU H3 H N N 36 AMU H4 H N N 37 AMU H5 H N N 38 AMU H61 H N N 39 AMU H62 H N N 40 AMU H81 H N N 41 AMU H82 H N N 42 AMU H83 H N N 43 AMU H9 H N N 44 AMU H111 H N N 45 AMU H112 H N N 46 AMU H113 H N N 47 AMU HO1 H N N 48 AMU HO4 H N N 49 AMU HO6 H N N 50 AMU HO11 H N N 51 AMU HN2 H N N 52 ARG N N N N 53 ARG CA C N S 54 ARG C C N N 55 ARG O O N N 56 ARG CB C N N 57 ARG CG C N N 58 ARG CD C N N 59 ARG NE N N N 60 ARG CZ C N N 61 ARG NH1 N N N 62 ARG NH2 N N N 63 ARG OXT O N N 64 ARG H H N N 65 ARG H2 H N N 66 ARG HA H N N 67 ARG HB2 H N N 68 ARG HB3 H N N 69 ARG HG2 H N N 70 ARG HG3 H N N 71 ARG HD2 H N N 72 ARG HD3 H N N 73 ARG HE H N N 74 ARG HH11 H N N 75 ARG HH12 H N N 76 ARG HH21 H N N 77 ARG HH22 H N N 78 ARG HXT H N N 79 ASN N N N N 80 ASN CA C N S 81 ASN C C N N 82 ASN O O N N 83 ASN CB C N N 84 ASN CG C N N 85 ASN OD1 O N N 86 ASN ND2 N N N 87 ASN OXT O N N 88 ASN H H N N 89 ASN H2 H N N 90 ASN HA H N N 91 ASN HB2 H N N 92 ASN HB3 H N N 93 ASN HD21 H N N 94 ASN HD22 H N N 95 ASN HXT H N N 96 ASP N N N N 97 ASP CA C N S 98 ASP C C N N 99 ASP O O N N 100 ASP CB C N N 101 ASP CG C N N 102 ASP OD1 O N N 103 ASP OD2 O N N 104 ASP OXT O N N 105 ASP H H N N 106 ASP H2 H N N 107 ASP HA H N N 108 ASP HB2 H N N 109 ASP HB3 H N N 110 ASP HD2 H N N 111 ASP HXT H N N 112 CYS N N N N 113 CYS CA C N R 114 CYS C C N N 115 CYS O O N N 116 CYS CB C N N 117 CYS SG S N N 118 CYS OXT O N N 119 CYS H H N N 120 CYS H2 H N N 121 CYS HA H N N 122 CYS HB2 H N N 123 CYS HB3 H N N 124 CYS HG H N N 125 CYS HXT H N N 126 DAL N N N N 127 DAL CA C N R 128 DAL CB C N N 129 DAL C C N N 130 DAL O O N N 131 DAL OXT O N N 132 DAL H H N N 133 DAL H2 H N N 134 DAL HA H N N 135 DAL HB1 H N N 136 DAL HB2 H N N 137 DAL HB3 H N N 138 DAL HXT H N N 139 GLN N N N N 140 GLN CA C N S 141 GLN C C N N 142 GLN O O N N 143 GLN CB C N N 144 GLN CG C N N 145 GLN CD C N N 146 GLN OE1 O N N 147 GLN NE2 N N N 148 GLN OXT O N N 149 GLN H H N N 150 GLN H2 H N N 151 GLN HA H N N 152 GLN HB2 H N N 153 GLN HB3 H N N 154 GLN HG2 H N N 155 GLN HG3 H N N 156 GLN HE21 H N N 157 GLN HE22 H N N 158 GLN HXT H N N 159 GLU N N N N 160 GLU CA C N S 161 GLU C C N N 162 GLU O O N N 163 GLU CB C N N 164 GLU CG C N N 165 GLU CD C N N 166 GLU OE1 O N N 167 GLU OE2 O N N 168 GLU OXT O N N 169 GLU H H N N 170 GLU H2 H N N 171 GLU HA H N N 172 GLU HB2 H N N 173 GLU HB3 H N N 174 GLU HG2 H N N 175 GLU HG3 H N N 176 GLU HE2 H N N 177 GLU HXT H N N 178 GLY N N N N 179 GLY CA C N N 180 GLY C C N N 181 GLY O O N N 182 GLY OXT O N N 183 GLY H H N N 184 GLY H2 H N N 185 GLY HA2 H N N 186 GLY HA3 H N N 187 GLY HXT H N N 188 GMA N N N N 189 GMA CA C N S 190 GMA CD C N N 191 GMA O1 O N N 192 GMA CB C N N 193 GMA CG C N N 194 GMA C C N N 195 GMA O O N N 196 GMA OXT O N N 197 GMA N2 N N N 198 GMA H H N N 199 GMA H2 H N N 200 GMA HA H N N 201 GMA HB2 H N N 202 GMA HB3 H N N 203 GMA HG2 H N N 204 GMA HG3 H N N 205 GMA HXT H N N 206 GMA HN2A H N N 207 GMA HN1 H N N 208 HIS N N N N 209 HIS CA C N S 210 HIS C C N N 211 HIS O O N N 212 HIS CB C N N 213 HIS CG C Y N 214 HIS ND1 N Y N 215 HIS CD2 C Y N 216 HIS CE1 C Y N 217 HIS NE2 N Y N 218 HIS OXT O N N 219 HIS H H N N 220 HIS H2 H N N 221 HIS HA H N N 222 HIS HB2 H N N 223 HIS HB3 H N N 224 HIS HD1 H N N 225 HIS HD2 H N N 226 HIS HE1 H N N 227 HIS HE2 H N N 228 HIS HXT H N N 229 HOH O O N N 230 HOH H1 H N N 231 HOH H2 H N N 232 ILE N N N N 233 ILE CA C N S 234 ILE C C N N 235 ILE O O N N 236 ILE CB C N S 237 ILE CG1 C N N 238 ILE CG2 C N N 239 ILE CD1 C N N 240 ILE OXT O N N 241 ILE H H N N 242 ILE H2 H N N 243 ILE HA H N N 244 ILE HB H N N 245 ILE HG12 H N N 246 ILE HG13 H N N 247 ILE HG21 H N N 248 ILE HG22 H N N 249 ILE HG23 H N N 250 ILE HD11 H N N 251 ILE HD12 H N N 252 ILE HD13 H N N 253 ILE HXT H N N 254 LEU N N N N 255 LEU CA C N S 256 LEU C C N N 257 LEU O O N N 258 LEU CB C N N 259 LEU CG C N N 260 LEU CD1 C N N 261 LEU CD2 C N N 262 LEU OXT O N N 263 LEU H H N N 264 LEU H2 H N N 265 LEU HA H N N 266 LEU HB2 H N N 267 LEU HB3 H N N 268 LEU HG H N N 269 LEU HD11 H N N 270 LEU HD12 H N N 271 LEU HD13 H N N 272 LEU HD21 H N N 273 LEU HD22 H N N 274 LEU HD23 H N N 275 LEU HXT H N N 276 LYS N N N N 277 LYS CA C N S 278 LYS C C N N 279 LYS O O N N 280 LYS CB C N N 281 LYS CG C N N 282 LYS CD C N N 283 LYS CE C N N 284 LYS NZ N N N 285 LYS OXT O N N 286 LYS H H N N 287 LYS H2 H N N 288 LYS HA H N N 289 LYS HB2 H N N 290 LYS HB3 H N N 291 LYS HG2 H N N 292 LYS HG3 H N N 293 LYS HD2 H N N 294 LYS HD3 H N N 295 LYS HE2 H N N 296 LYS HE3 H N N 297 LYS HZ1 H N N 298 LYS HZ2 H N N 299 LYS HZ3 H N N 300 LYS HXT H N N 301 MET N N N N 302 MET CA C N S 303 MET C C N N 304 MET O O N N 305 MET CB C N N 306 MET CG C N N 307 MET SD S N N 308 MET CE C N N 309 MET OXT O N N 310 MET H H N N 311 MET H2 H N N 312 MET HA H N N 313 MET HB2 H N N 314 MET HB3 H N N 315 MET HG2 H N N 316 MET HG3 H N N 317 MET HE1 H N N 318 MET HE2 H N N 319 MET HE3 H N N 320 MET HXT H N N 321 NH2 N N N N 322 NH2 HN1 H N N 323 NH2 HN2 H N N 324 PHE N N N N 325 PHE CA C N S 326 PHE C C N N 327 PHE O O N N 328 PHE CB C N N 329 PHE CG C Y N 330 PHE CD1 C Y N 331 PHE CD2 C Y N 332 PHE CE1 C Y N 333 PHE CE2 C Y N 334 PHE CZ C Y N 335 PHE OXT O N N 336 PHE H H N N 337 PHE H2 H N N 338 PHE HA H N N 339 PHE HB2 H N N 340 PHE HB3 H N N 341 PHE HD1 H N N 342 PHE HD2 H N N 343 PHE HE1 H N N 344 PHE HE2 H N N 345 PHE HZ H N N 346 PHE HXT H N N 347 PRO N N N N 348 PRO CA C N S 349 PRO C C N N 350 PRO O O N N 351 PRO CB C N N 352 PRO CG C N N 353 PRO CD C N N 354 PRO OXT O N N 355 PRO H H N N 356 PRO HA H N N 357 PRO HB2 H N N 358 PRO HB3 H N N 359 PRO HG2 H N N 360 PRO HG3 H N N 361 PRO HD2 H N N 362 PRO HD3 H N N 363 PRO HXT H N N 364 SER N N N N 365 SER CA C N S 366 SER C C N N 367 SER O O N N 368 SER CB C N N 369 SER OG O N N 370 SER OXT O N N 371 SER H H N N 372 SER H2 H N N 373 SER HA H N N 374 SER HB2 H N N 375 SER HB3 H N N 376 SER HG H N N 377 SER HXT H N N 378 SO4 S S N N 379 SO4 O1 O N N 380 SO4 O2 O N N 381 SO4 O3 O N N 382 SO4 O4 O N N 383 THR N N N N 384 THR CA C N S 385 THR C C N N 386 THR O O N N 387 THR CB C N R 388 THR OG1 O N N 389 THR CG2 C N N 390 THR OXT O N N 391 THR H H N N 392 THR H2 H N N 393 THR HA H N N 394 THR HB H N N 395 THR HG1 H N N 396 THR HG21 H N N 397 THR HG22 H N N 398 THR HG23 H N N 399 THR HXT H N N 400 TRP N N N N 401 TRP CA C N S 402 TRP C C N N 403 TRP O O N N 404 TRP CB C N N 405 TRP CG C Y N 406 TRP CD1 C Y N 407 TRP CD2 C Y N 408 TRP NE1 N Y N 409 TRP CE2 C Y N 410 TRP CE3 C Y N 411 TRP CZ2 C Y N 412 TRP CZ3 C Y N 413 TRP CH2 C Y N 414 TRP OXT O N N 415 TRP H H N N 416 TRP H2 H N N 417 TRP HA H N N 418 TRP HB2 H N N 419 TRP HB3 H N N 420 TRP HD1 H N N 421 TRP HE1 H N N 422 TRP HE3 H N N 423 TRP HZ2 H N N 424 TRP HZ3 H N N 425 TRP HH2 H N N 426 TRP HXT H N N 427 TYR N N N N 428 TYR CA C N S 429 TYR C C N N 430 TYR O O N N 431 TYR CB C N N 432 TYR CG C Y N 433 TYR CD1 C Y N 434 TYR CD2 C Y N 435 TYR CE1 C Y N 436 TYR CE2 C Y N 437 TYR CZ C Y N 438 TYR OH O N N 439 TYR OXT O N N 440 TYR H H N N 441 TYR H2 H N N 442 TYR HA H N N 443 TYR HB2 H N N 444 TYR HB3 H N N 445 TYR HD1 H N N 446 TYR HD2 H N N 447 TYR HE1 H N N 448 TYR HE2 H N N 449 TYR HH H N N 450 TYR HXT H N N 451 VAL N N N N 452 VAL CA C N S 453 VAL C C N N 454 VAL O O N N 455 VAL CB C N N 456 VAL CG1 C N N 457 VAL CG2 C N N 458 VAL OXT O N N 459 VAL H H N N 460 VAL H2 H N N 461 VAL HA H N N 462 VAL HB H N N 463 VAL HG11 H N N 464 VAL HG12 H N N 465 VAL HG13 H N N 466 VAL HG21 H N N 467 VAL HG22 H N N 468 VAL HG23 H N N 469 VAL HXT H N N 470 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 AMU C1 C2 sing N N 13 AMU C1 O1 sing N N 14 AMU C1 O5 sing N N 15 AMU C1 H1 sing N N 16 AMU C2 C3 sing N N 17 AMU C2 N2 sing N N 18 AMU C2 H2 sing N N 19 AMU C3 C4 sing N N 20 AMU C3 O3 sing N N 21 AMU C3 H3 sing N N 22 AMU C4 C5 sing N N 23 AMU C4 O4 sing N N 24 AMU C4 H4 sing N N 25 AMU C5 C6 sing N N 26 AMU C5 O5 sing N N 27 AMU C5 H5 sing N N 28 AMU C6 O6 sing N N 29 AMU C6 H61 sing N N 30 AMU C6 H62 sing N N 31 AMU C7 C8 sing N N 32 AMU C7 O7 doub N N 33 AMU C7 N2 sing N N 34 AMU C8 H81 sing N N 35 AMU C8 H82 sing N N 36 AMU C8 H83 sing N N 37 AMU C9 C10 sing N N 38 AMU C9 C11 sing N N 39 AMU C9 O3 sing N N 40 AMU C9 H9 sing N N 41 AMU C10 O10 doub N N 42 AMU C10 O11 sing N N 43 AMU C11 H111 sing N N 44 AMU C11 H112 sing N N 45 AMU C11 H113 sing N N 46 AMU O1 HO1 sing N N 47 AMU O4 HO4 sing N N 48 AMU O6 HO6 sing N N 49 AMU O11 HO11 sing N N 50 AMU N2 HN2 sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 CYS N CA sing N N 109 CYS N H sing N N 110 CYS N H2 sing N N 111 CYS CA C sing N N 112 CYS CA CB sing N N 113 CYS CA HA sing N N 114 CYS C O doub N N 115 CYS C OXT sing N N 116 CYS CB SG sing N N 117 CYS CB HB2 sing N N 118 CYS CB HB3 sing N N 119 CYS SG HG sing N N 120 CYS OXT HXT sing N N 121 DAL N CA sing N N 122 DAL N H sing N N 123 DAL N H2 sing N N 124 DAL CA CB sing N N 125 DAL CA C sing N N 126 DAL CA HA sing N N 127 DAL CB HB1 sing N N 128 DAL CB HB2 sing N N 129 DAL CB HB3 sing N N 130 DAL C O doub N N 131 DAL C OXT sing N N 132 DAL OXT HXT sing N N 133 GLN N CA sing N N 134 GLN N H sing N N 135 GLN N H2 sing N N 136 GLN CA C sing N N 137 GLN CA CB sing N N 138 GLN CA HA sing N N 139 GLN C O doub N N 140 GLN C OXT sing N N 141 GLN CB CG sing N N 142 GLN CB HB2 sing N N 143 GLN CB HB3 sing N N 144 GLN CG CD sing N N 145 GLN CG HG2 sing N N 146 GLN CG HG3 sing N N 147 GLN CD OE1 doub N N 148 GLN CD NE2 sing N N 149 GLN NE2 HE21 sing N N 150 GLN NE2 HE22 sing N N 151 GLN OXT HXT sing N N 152 GLU N CA sing N N 153 GLU N H sing N N 154 GLU N H2 sing N N 155 GLU CA C sing N N 156 GLU CA CB sing N N 157 GLU CA HA sing N N 158 GLU C O doub N N 159 GLU C OXT sing N N 160 GLU CB CG sing N N 161 GLU CB HB2 sing N N 162 GLU CB HB3 sing N N 163 GLU CG CD sing N N 164 GLU CG HG2 sing N N 165 GLU CG HG3 sing N N 166 GLU CD OE1 doub N N 167 GLU CD OE2 sing N N 168 GLU OE2 HE2 sing N N 169 GLU OXT HXT sing N N 170 GLY N CA sing N N 171 GLY N H sing N N 172 GLY N H2 sing N N 173 GLY CA C sing N N 174 GLY CA HA2 sing N N 175 GLY CA HA3 sing N N 176 GLY C O doub N N 177 GLY C OXT sing N N 178 GLY OXT HXT sing N N 179 GMA N CA sing N N 180 GMA N H sing N N 181 GMA N H2 sing N N 182 GMA CA CD sing N N 183 GMA CA CB sing N N 184 GMA CA HA sing N N 185 GMA CD O1 doub N N 186 GMA CD N2 sing N N 187 GMA CB CG sing N N 188 GMA CB HB2 sing N N 189 GMA CB HB3 sing N N 190 GMA CG C sing N N 191 GMA CG HG2 sing N N 192 GMA CG HG3 sing N N 193 GMA C O doub N N 194 GMA C OXT sing N N 195 GMA OXT HXT sing N N 196 GMA N2 HN2A sing N N 197 GMA N2 HN1 sing N N 198 HIS N CA sing N N 199 HIS N H sing N N 200 HIS N H2 sing N N 201 HIS CA C sing N N 202 HIS CA CB sing N N 203 HIS CA HA sing N N 204 HIS C O doub N N 205 HIS C OXT sing N N 206 HIS CB CG sing N N 207 HIS CB HB2 sing N N 208 HIS CB HB3 sing N N 209 HIS CG ND1 sing Y N 210 HIS CG CD2 doub Y N 211 HIS ND1 CE1 doub Y N 212 HIS ND1 HD1 sing N N 213 HIS CD2 NE2 sing Y N 214 HIS CD2 HD2 sing N N 215 HIS CE1 NE2 sing Y N 216 HIS CE1 HE1 sing N N 217 HIS NE2 HE2 sing N N 218 HIS OXT HXT sing N N 219 HOH O H1 sing N N 220 HOH O H2 sing N N 221 ILE N CA sing N N 222 ILE N H sing N N 223 ILE N H2 sing N N 224 ILE CA C sing N N 225 ILE CA CB sing N N 226 ILE CA HA sing N N 227 ILE C O doub N N 228 ILE C OXT sing N N 229 ILE CB CG1 sing N N 230 ILE CB CG2 sing N N 231 ILE CB HB sing N N 232 ILE CG1 CD1 sing N N 233 ILE CG1 HG12 sing N N 234 ILE CG1 HG13 sing N N 235 ILE CG2 HG21 sing N N 236 ILE CG2 HG22 sing N N 237 ILE CG2 HG23 sing N N 238 ILE CD1 HD11 sing N N 239 ILE CD1 HD12 sing N N 240 ILE CD1 HD13 sing N N 241 ILE OXT HXT sing N N 242 LEU N CA sing N N 243 LEU N H sing N N 244 LEU N H2 sing N N 245 LEU CA C sing N N 246 LEU CA CB sing N N 247 LEU CA HA sing N N 248 LEU C O doub N N 249 LEU C OXT sing N N 250 LEU CB CG sing N N 251 LEU CB HB2 sing N N 252 LEU CB HB3 sing N N 253 LEU CG CD1 sing N N 254 LEU CG CD2 sing N N 255 LEU CG HG sing N N 256 LEU CD1 HD11 sing N N 257 LEU CD1 HD12 sing N N 258 LEU CD1 HD13 sing N N 259 LEU CD2 HD21 sing N N 260 LEU CD2 HD22 sing N N 261 LEU CD2 HD23 sing N N 262 LEU OXT HXT sing N N 263 LYS N CA sing N N 264 LYS N H sing N N 265 LYS N H2 sing N N 266 LYS CA C sing N N 267 LYS CA CB sing N N 268 LYS CA HA sing N N 269 LYS C O doub N N 270 LYS C OXT sing N N 271 LYS CB CG sing N N 272 LYS CB HB2 sing N N 273 LYS CB HB3 sing N N 274 LYS CG CD sing N N 275 LYS CG HG2 sing N N 276 LYS CG HG3 sing N N 277 LYS CD CE sing N N 278 LYS CD HD2 sing N N 279 LYS CD HD3 sing N N 280 LYS CE NZ sing N N 281 LYS CE HE2 sing N N 282 LYS CE HE3 sing N N 283 LYS NZ HZ1 sing N N 284 LYS NZ HZ2 sing N N 285 LYS NZ HZ3 sing N N 286 LYS OXT HXT sing N N 287 MET N CA sing N N 288 MET N H sing N N 289 MET N H2 sing N N 290 MET CA C sing N N 291 MET CA CB sing N N 292 MET CA HA sing N N 293 MET C O doub N N 294 MET C OXT sing N N 295 MET CB CG sing N N 296 MET CB HB2 sing N N 297 MET CB HB3 sing N N 298 MET CG SD sing N N 299 MET CG HG2 sing N N 300 MET CG HG3 sing N N 301 MET SD CE sing N N 302 MET CE HE1 sing N N 303 MET CE HE2 sing N N 304 MET CE HE3 sing N N 305 MET OXT HXT sing N N 306 NH2 N HN1 sing N N 307 NH2 N HN2 sing N N 308 PHE N CA sing N N 309 PHE N H sing N N 310 PHE N H2 sing N N 311 PHE CA C sing N N 312 PHE CA CB sing N N 313 PHE CA HA sing N N 314 PHE C O doub N N 315 PHE C OXT sing N N 316 PHE CB CG sing N N 317 PHE CB HB2 sing N N 318 PHE CB HB3 sing N N 319 PHE CG CD1 doub Y N 320 PHE CG CD2 sing Y N 321 PHE CD1 CE1 sing Y N 322 PHE CD1 HD1 sing N N 323 PHE CD2 CE2 doub Y N 324 PHE CD2 HD2 sing N N 325 PHE CE1 CZ doub Y N 326 PHE CE1 HE1 sing N N 327 PHE CE2 CZ sing Y N 328 PHE CE2 HE2 sing N N 329 PHE CZ HZ sing N N 330 PHE OXT HXT sing N N 331 PRO N CA sing N N 332 PRO N CD sing N N 333 PRO N H sing N N 334 PRO CA C sing N N 335 PRO CA CB sing N N 336 PRO CA HA sing N N 337 PRO C O doub N N 338 PRO C OXT sing N N 339 PRO CB CG sing N N 340 PRO CB HB2 sing N N 341 PRO CB HB3 sing N N 342 PRO CG CD sing N N 343 PRO CG HG2 sing N N 344 PRO CG HG3 sing N N 345 PRO CD HD2 sing N N 346 PRO CD HD3 sing N N 347 PRO OXT HXT sing N N 348 SER N CA sing N N 349 SER N H sing N N 350 SER N H2 sing N N 351 SER CA C sing N N 352 SER CA CB sing N N 353 SER CA HA sing N N 354 SER C O doub N N 355 SER C OXT sing N N 356 SER CB OG sing N N 357 SER CB HB2 sing N N 358 SER CB HB3 sing N N 359 SER OG HG sing N N 360 SER OXT HXT sing N N 361 SO4 S O1 doub N N 362 SO4 S O2 doub N N 363 SO4 S O3 sing N N 364 SO4 S O4 sing N N 365 THR N CA sing N N 366 THR N H sing N N 367 THR N H2 sing N N 368 THR CA C sing N N 369 THR CA CB sing N N 370 THR CA HA sing N N 371 THR C O doub N N 372 THR C OXT sing N N 373 THR CB OG1 sing N N 374 THR CB CG2 sing N N 375 THR CB HB sing N N 376 THR OG1 HG1 sing N N 377 THR CG2 HG21 sing N N 378 THR CG2 HG22 sing N N 379 THR CG2 HG23 sing N N 380 THR OXT HXT sing N N 381 TRP N CA sing N N 382 TRP N H sing N N 383 TRP N H2 sing N N 384 TRP CA C sing N N 385 TRP CA CB sing N N 386 TRP CA HA sing N N 387 TRP C O doub N N 388 TRP C OXT sing N N 389 TRP CB CG sing N N 390 TRP CB HB2 sing N N 391 TRP CB HB3 sing N N 392 TRP CG CD1 doub Y N 393 TRP CG CD2 sing Y N 394 TRP CD1 NE1 sing Y N 395 TRP CD1 HD1 sing N N 396 TRP CD2 CE2 doub Y N 397 TRP CD2 CE3 sing Y N 398 TRP NE1 CE2 sing Y N 399 TRP NE1 HE1 sing N N 400 TRP CE2 CZ2 sing Y N 401 TRP CE3 CZ3 doub Y N 402 TRP CE3 HE3 sing N N 403 TRP CZ2 CH2 doub Y N 404 TRP CZ2 HZ2 sing N N 405 TRP CZ3 CH2 sing Y N 406 TRP CZ3 HZ3 sing N N 407 TRP CH2 HH2 sing N N 408 TRP OXT HXT sing N N 409 TYR N CA sing N N 410 TYR N H sing N N 411 TYR N H2 sing N N 412 TYR CA C sing N N 413 TYR CA CB sing N N 414 TYR CA HA sing N N 415 TYR C O doub N N 416 TYR C OXT sing N N 417 TYR CB CG sing N N 418 TYR CB HB2 sing N N 419 TYR CB HB3 sing N N 420 TYR CG CD1 doub Y N 421 TYR CG CD2 sing Y N 422 TYR CD1 CE1 sing Y N 423 TYR CD1 HD1 sing N N 424 TYR CD2 CE2 doub Y N 425 TYR CD2 HD2 sing N N 426 TYR CE1 CZ doub Y N 427 TYR CE1 HE1 sing N N 428 TYR CE2 CZ sing Y N 429 TYR CE2 HE2 sing N N 430 TYR CZ OH sing N N 431 TYR OH HH sing N N 432 TYR OXT HXT sing N N 433 VAL N CA sing N N 434 VAL N H sing N N 435 VAL N H2 sing N N 436 VAL CA C sing N N 437 VAL CA CB sing N N 438 VAL CA HA sing N N 439 VAL C O doub N N 440 VAL C OXT sing N N 441 VAL CB CG1 sing N N 442 VAL CB CG2 sing N N 443 VAL CB HB sing N N 444 VAL CG1 HG11 sing N N 445 VAL CG1 HG12 sing N N 446 VAL CG1 HG13 sing N N 447 VAL CG2 HG21 sing N N 448 VAL CG2 HG22 sing N N 449 VAL CG2 HG23 sing N N 450 VAL OXT HXT sing N N 451 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1SK3 _pdbx_initial_refinement_model.details 'PDB Entry: 1SK3' # _atom_sites.entry_id 2APH _atom_sites.fract_transf_matrix[1][1] 0.026413 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001685 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017056 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014233 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_