HEADER SUPEROXIDE DISMUTASE 11-FEB-99 2APS TITLE CU/ZN SUPEROXIDE DISMUTASE FROM ACTINOBACILLUS PLEUROPNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (CU,ZN SUPEROXIDE DISMUTASE); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SOD; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: EACH ACTIVE SITE CONTAINS ONE COPPER AND ONE ZINC. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOBACILLUS PLEUROPNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 715; SOURCE 4 CELLULAR_LOCATION: PERIPLASM; SOURCE 5 GENE: SODC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: QC779; SOURCE 9 EXPRESSION_SYSTEM_CELLULAR_LOCATION: PERIPLASM; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJSK157; SOURCE 11 EXPRESSION_SYSTEM_GENE: SODC KEYWDS SUPEROXIDE DISMUTASE, SOD, WATER-MEDIATED DIMER, BETA BARREL EXPDTA X-RAY DIFFRACTION AUTHOR K.T.FOREST,P.R.LANGFORD,J.S.KROLL,E.D.GETZOFF REVDAT 5 23-AUG-23 2APS 1 REMARK SHEET LINK REVDAT 4 24-FEB-09 2APS 1 VERSN REVDAT 3 01-APR-03 2APS 1 JRNL REVDAT 2 07-FEB-00 2APS 1 JRNL REVDAT 1 25-FEB-99 2APS 0 JRNL AUTH K.T.FOREST,P.R.LANGFORD,J.S.KROLL,E.D.GETZOFF JRNL TITL CU,ZN SUPEROXIDE DISMUTASE STRUCTURE FROM A MICROBIAL JRNL TITL 2 PATHOGEN ESTABLISHES A CLASS WITH A CONSERVED DIMER JRNL TITL 3 INTERFACE. JRNL REF J.MOL.BIOL. V. 296 145 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10656823 JRNL DOI 10.1006/JMBI.1999.3448 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 30219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1534 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2549 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2321 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 25.80000 REMARK 3 B22 (A**2) : 22.90000 REMARK 3 B33 (A**2) : 16.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 1.500 REMARK 3 BOND ANGLES (DEGREES) : 0.016 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; 1.900 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.000 ; 3.100 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; 3.100 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.500 ; 4.700 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX_SOD.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19.PEP REMARK 3 TOPOLOGY FILE 2 : TOPHCSDX_SOD.PRO REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CHAIN B IS MUCH MORE WELL-ORDERED THAN REMARK 3 CHAIN A. REMARK 4 REMARK 4 2APS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-99. REMARK 100 THE DEPOSITION ID IS D_1000000470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUL-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30234 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 28.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.09200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 13.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1YAI REMARK 200 REMARK 200 REMARK: SEARCH MODEL WAS A DIMER. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.62500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.62500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.02500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.94000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.02500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.94000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.62500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.02500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.94000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.62500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.02500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.94000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CU CU A 300 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 6 REMARK 465 ALA A 7 REMARK 465 ASP A 8 REMARK 465 ASN A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 VAL A 12 REMARK 465 LYS B 6 REMARK 465 ALA B 7 REMARK 465 ASP B 8 REMARK 465 ASN B 9 REMARK 465 SER B 10 REMARK 465 SER B 11 REMARK 465 VAL B 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LEU A 76 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 23 100.41 -173.59 REMARK 500 GLN A 63 -73.72 -57.48 REMARK 500 PRO A 69 -176.65 -66.70 REMARK 500 ASP A 145 112.34 -167.83 REMARK 500 HIS B 48 69.98 -151.60 REMARK 500 ASP B 145 109.01 -160.47 REMARK 500 PRO B 159 156.20 -49.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 CU 300 AND CU 500 FORM CRYSTAL CONTACTS. REMARK 600 CU 300 LIES ON A SPECIAL POSITION. REMARK 600 CU 402 AND CU 602 ARE IN ACTIVE SITES. REMARK 600 REMARK 600 BOTH ZINC IONS ARE IN ACTIVE SITES. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 300 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 48 NE2 REMARK 620 2 HIS A 48 NE2 96.6 REMARK 620 3 HIS A 50 NE2 83.1 162.4 REMARK 620 4 HIS A 50 NE2 165.0 83.5 101.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 402 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 60 ND1 REMARK 620 2 HIS A 62 NE2 140.6 REMARK 620 3 HIS A 141 NE2 89.7 126.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 85 ND1 REMARK 620 2 HIS A 94 ND1 104.7 REMARK 620 3 HIS A 103 ND1 109.2 118.6 REMARK 620 4 ASP A 106 OD1 111.8 98.8 113.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 500 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 48 NE2 REMARK 620 2 HIS B 50 NE2 95.7 REMARK 620 3 HIS B 114 NE2 161.9 102.1 REMARK 620 4 HOH B1353 O 86.1 76.8 94.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 60 ND1 REMARK 620 2 HIS B 62 NE2 140.1 REMARK 620 3 HIS B 141 NE2 102.5 114.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 600 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 85 ND1 REMARK 620 2 HIS B 94 ND1 103.3 REMARK 620 3 HIS B 103 ND1 106.7 124.9 REMARK 620 4 ASP B 106 OD1 111.0 95.4 114.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: COPPER AND ZINC ARE LIGATED BY THREE CONSERVED REMARK 800 HISTIDINES EACH IN THE ACTIVE SITE OF EACH SUBUNIT. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 602 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS NO LEADER PEPTIDE IN THE REMARK 999 PURIFIED PROTEIN (23 RESIDUES ARE REMARK 999 CLEAVED) AND THE FIRST 5 RESIDUES REMARK 999 OF THE EXPRESSED (MATURE) PROTEIN REMARK 999 HAVE APPARENTLY BEEN CLEAVED DURING REMARK 999 PURIFICATION. RESIDUES 6-12 ARE REMARK 999 PRESENT IN THE PROTEIN BUT NOT SEEN REMARK 999 IN THE ELECTRON DENSITY. DBREF 2APS A 13 167 UNP P24702 SODC_ACTPL 29 190 DBREF 2APS B 13 167 GB 1438120 X99396 29 190 SEQRES 1 A 162 LYS ALA ASP ASN SER SER VAL GLU LYS LEU VAL VAL GLN SEQRES 2 A 162 VAL GLN GLN LEU ASP PRO VAL LYS GLY ASN LYS ASP VAL SEQRES 3 A 162 GLY THR VAL GLU ILE THR GLU SER ALA TYR GLY LEU VAL SEQRES 4 A 162 PHE THR PRO HIS LEU HIS GLY LEU ALA GLN GLY LEU HIS SEQRES 5 A 162 GLY PHE HIS ILE HIS GLN ASN PRO SER CYS GLU PRO LYS SEQRES 6 A 162 GLU LYS ASP GLY LYS LEU VAL ALA GLY LEU GLY ALA GLY SEQRES 7 A 162 GLY HIS TRP ASP PRO LYS GLU THR LYS GLN HIS GLY TYR SEQRES 8 A 162 PRO TRP SER ASP ASN ALA HIS LEU GLY ASP LEU PRO ALA SEQRES 9 A 162 LEU PHE VAL GLU HIS ASP GLY SER ALA THR ASN PRO VAL SEQRES 10 A 162 LEU ALA PRO ARG LEU LYS LYS LEU ASP GLU VAL LYS GLY SEQRES 11 A 162 HIS SER LEU MET ILE HIS GLU GLY GLY ASP ASN HIS SER SEQRES 12 A 162 ASP HIS PRO ALA PRO LEU GLY GLY GLY GLY PRO ARG MET SEQRES 13 A 162 ALA CYS GLY VAL ILE LYS SEQRES 1 B 162 LYS ALA ASP ASN SER SER VAL GLU LYS LEU VAL VAL GLN SEQRES 2 B 162 VAL GLN GLN LEU ASP PRO VAL LYS GLY ASN LYS ASP VAL SEQRES 3 B 162 GLY THR VAL GLU ILE THR GLU SER ALA TYR GLY LEU VAL SEQRES 4 B 162 PHE THR PRO HIS LEU HIS GLY LEU ALA GLN GLY LEU HIS SEQRES 5 B 162 GLY PHE HIS ILE HIS GLN ASN PRO SER CYS GLU PRO LYS SEQRES 6 B 162 GLU LYS ASP GLY LYS LEU VAL ALA GLY LEU GLY ALA GLY SEQRES 7 B 162 GLY HIS TRP ASP PRO LYS GLU THR LYS GLN HIS GLY TYR SEQRES 8 B 162 PRO TRP SER ASP ASN ALA HIS LEU GLY ASP LEU PRO ALA SEQRES 9 B 162 LEU PHE VAL GLU HIS ASP GLY SER ALA THR ASN PRO VAL SEQRES 10 B 162 LEU ALA PRO ARG LEU LYS LYS LEU ASP GLU VAL LYS GLY SEQRES 11 B 162 HIS SER LEU MET ILE HIS GLU GLY GLY ASP ASN HIS SER SEQRES 12 B 162 ASP HIS PRO ALA PRO LEU GLY GLY GLY GLY PRO ARG MET SEQRES 13 B 162 ALA CYS GLY VAL ILE LYS HET CU A 300 1 HET ZN A 400 1 HET CU A 402 1 HET CU B 500 1 HET ZN B 600 1 HET CU B 602 1 HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION FORMUL 3 CU 4(CU 2+) FORMUL 4 ZN 2(ZN 2+) FORMUL 9 HOH *126(H2 O) HELIX 1 1 LEU A 80 ALA A 82 5 3 HELIX 2 2 LEU A 130 VAL A 133 1 4 HELIX 3 3 PRO A 153 GLY A 156 5 4 HELIX 4 4 LEU B 80 ALA B 82 5 3 HELIX 5 5 LEU B 130 VAL B 133 1 4 HELIX 6 6 PRO B 153 GLY B 156 5 4 SHEET 1 A 7 VAL A 122 ALA A 124 0 SHEET 2 A 7 GLY A 42 LEU A 49 -1 N PHE A 45 O VAL A 122 SHEET 3 A 7 LYS A 29 SER A 39 -1 N SER A 39 O GLY A 42 SHEET 4 A 7 VAL A 16 GLN A 21 -1 N GLN A 21 O LYS A 29 SHEET 5 A 7 ARG A 160 ILE A 166 -1 N CYS A 163 O GLN A 20 SHEET 6 A 7 HIS A 136 HIS A 141 -1 N ILE A 140 O MET A 161 SHEET 7 A 7 PHE A 59 HIS A 62 -1 N HIS A 62 O SER A 137 SHEET 1 B 2 GLY A 55 HIS A 57 0 SHEET 2 B 2 LEU A 110 VAL A 112 -1 N VAL A 112 O GLY A 55 SHEET 1 C 1 LYS A 70 LYS A 72 0 SHEET 1 D 4 VAL B 122 ALA B 124 0 SHEET 2 D 4 GLY B 42 LEU B 49 -1 N PHE B 45 O VAL B 122 SHEET 3 D 4 LYS B 29 SER B 39 -1 N SER B 39 O GLY B 42 SHEET 4 D 4 LEU B 15 GLN B 21 -1 N GLN B 21 O LYS B 29 SHEET 1 E 2 GLY B 55 HIS B 57 0 SHEET 2 E 2 LEU B 110 VAL B 112 -1 N VAL B 112 O GLY B 55 SHEET 1 F 3 PHE B 59 HIS B 62 0 SHEET 2 F 3 HIS B 136 HIS B 141 -1 N MET B 139 O HIS B 60 SHEET 3 F 3 ARG B 160 ILE B 166 -1 N ILE B 166 O HIS B 136 SHEET 1 G 2 LYS B 70 LYS B 72 0 SHEET 2 G 2 LYS B 75 VAL B 77 -1 N VAL B 77 O LYS B 70 SSBOND 1 CYS A 67 CYS A 163 1555 1555 2.04 SSBOND 2 CYS B 67 CYS B 163 1555 1555 2.05 LINK NE2 HIS A 48 CU CU A 300 1555 1555 1.71 LINK NE2 HIS A 48 CU CU A 300 3655 1555 1.71 LINK NE2 HIS A 50 CU CU A 300 1555 1555 1.65 LINK NE2 HIS A 50 CU CU A 300 3655 1555 1.64 LINK ND1 HIS A 60 CU CU A 402 1555 1555 2.29 LINK NE2 HIS A 62 CU CU A 402 1555 1555 2.24 LINK ND1 HIS A 85 ZN ZN A 400 1555 1555 2.13 LINK ND1 HIS A 94 ZN ZN A 400 1555 1555 2.10 LINK ND1 HIS A 103 ZN ZN A 400 1555 1555 2.15 LINK OD1 ASP A 106 ZN ZN A 400 1555 1555 2.00 LINK NE2 HIS A 141 CU CU A 402 1555 1555 1.89 LINK NE2 HIS B 48 CU CU B 500 1555 1555 2.28 LINK NE2 HIS B 50 CU CU B 500 1555 1555 2.34 LINK ND1 HIS B 60 CU CU B 602 1555 1555 1.99 LINK NE2 HIS B 62 CU CU B 602 1555 1555 2.05 LINK ND1 HIS B 85 ZN ZN B 600 1555 1555 2.08 LINK ND1 HIS B 94 ZN ZN B 600 1555 1555 2.13 LINK ND1 HIS B 103 ZN ZN B 600 1555 1555 2.01 LINK OD1 ASP B 106 ZN ZN B 600 1555 1555 2.00 LINK NE2 HIS B 114 CU CU B 500 4566 1555 1.98 LINK NE2 HIS B 141 CU CU B 602 1555 1555 2.14 LINK CU CU B 500 O HOH B1353 1555 1555 1.51 CISPEP 1 HIS A 150 PRO A 151 0 0.07 CISPEP 2 HIS B 150 PRO B 151 0 0.18 SITE 1 ACT 12 HIS A 60 HIS A 62 HIS A 85 HIS A 94 SITE 2 ACT 12 HIS A 103 HIS A 141 HIS B 60 HIS B 62 SITE 3 ACT 12 HIS B 85 HIS B 94 HIS B 103 HIS B 141 SITE 1 AC1 2 HIS A 48 HIS A 50 SITE 1 AC2 4 HIS B 48 HIS B 50 HIS B 114 HOH B1353 SITE 1 AC3 4 HIS A 85 HIS A 94 HIS A 103 ASP A 106 SITE 1 AC4 4 HIS A 60 HIS A 62 HIS A 85 HIS A 141 SITE 1 AC5 4 HIS B 85 HIS B 94 HIS B 103 ASP B 106 SITE 1 AC6 4 HIS B 60 HIS B 62 HIS B 85 HIS B 141 CRYST1 58.050 123.880 107.250 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009324 0.00000 MTRIX1 1 -0.859000 0.506300 -0.076500 25.49200 1 MTRIX2 1 0.501500 0.801600 -0.325500 11.14300 1 MTRIX3 1 -0.103500 -0.318000 -0.942400 102.93800 1