HEADER DNA REPAIR, HYDROLASE 17-AUG-05 2AQ0 TITLE SOLUTION STRUCTURE OF THE HUMAN HOMODIMERIC DNA REPAIR PROTEIN XPF COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR ENDONUCLEASE XPF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 823-905; COMPND 5 SYNONYM: DNA EXCISION REPAIR PROTEIN ERCC-4; DNA-REPAIR PROTEIN COMPND 6 COMPLEMENTING XP-F CELL; XERODERMA PIGMENTOSUM GROUP F COMPLEMENTING COMPND 7 PROTEIN; COMPND 8 EC: 3.1.-.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERCC4, ERCC11, XPF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NMR SPECTROSCOPY, DNA REPAIR, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.DAS,K.TRIPSIANES,G.FOLKERS,N.G.JASPERS,J.H.HOEIJMAKERS,R.KAPTEIN, AUTHOR 2 R.BOELENS REVDAT 4 22-MAY-24 2AQ0 1 REMARK REVDAT 3 09-MAR-22 2AQ0 1 REMARK SEQADV REVDAT 2 05-AUG-08 2AQ0 1 JRNL VERSN REVDAT 1 03-OCT-06 2AQ0 0 JRNL AUTH D.DAS,K.TRIPSIANES,N.G.JASPERS,J.H.HOEIJMAKERS,R.KAPTEIN, JRNL AUTH 2 R.BOELENS,G.FOLKERS JRNL TITL THE HHH DOMAIN OF THE HUMAN DNA REPAIR PROTEIN XPF FORMS JRNL TITL 2 STABLE HOMODIMERS JRNL REF PROTEINS V. 70 1551 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 17912758 JRNL DOI 10.1002/PROT.21635 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CNS REMARK 3 AUTHORS : BRUKER (XWINNMR), A. BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AQ0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034176. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.6 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 400MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.2MM XPF U-15N,13C; 10MM REMARK 210 PHOSPHATE; 400MM SODIUM CHLORIDE; REMARK 210 92 % H2O, 8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D-(H)NCH REMARK 210 NOESY HSQC; 2D-15N-SEPARATED- REMARK 210 (13C)AROMATIC (1H-1H)NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, CYANA 2, SPARKY REMARK 210 3.11 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS; REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20 REMARK 210 REMARK 210 REMARK: STURCTURE DETERMINED USING COMBINED TRIPLE RESONANCE AND REMARK 210 2D HOMONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 10 76.27 54.30 REMARK 500 1 TYR A 12 94.94 67.91 REMARK 500 1 ILE A 41 -56.60 -26.20 REMARK 500 1 GLU A 75 -66.36 -96.93 REMARK 500 1 ASP B 102 -168.82 -166.09 REMARK 500 1 TYR B 112 85.43 50.22 REMARK 500 1 ILE B 141 -54.53 -24.81 REMARK 500 1 LYS B 183 -163.23 67.95 REMARK 500 2 PRO A 7 99.76 -68.00 REMARK 500 2 GLU A 10 73.29 63.81 REMARK 500 2 TYR A 12 89.26 67.63 REMARK 500 2 ASN A 40 -163.57 -165.66 REMARK 500 2 THR B 105 85.97 66.02 REMARK 500 2 GLU B 110 71.65 57.45 REMARK 500 2 TYR B 112 95.65 64.10 REMARK 500 2 ASN B 140 -163.70 -163.17 REMARK 500 2 LYS B 183 -79.70 -87.95 REMARK 500 3 GLU A 10 71.95 59.69 REMARK 500 3 TYR A 12 92.27 58.77 REMARK 500 3 LYS A 79 -33.11 61.69 REMARK 500 3 TYR B 112 95.82 65.34 REMARK 500 3 ASN B 140 -162.96 -162.90 REMARK 500 3 LYS B 179 -59.26 -138.32 REMARK 500 3 LYS B 183 -69.16 -121.10 REMARK 500 4 TYR A 12 99.77 69.75 REMARK 500 4 ASP B 102 -165.80 56.65 REMARK 500 4 GLU B 110 74.31 60.25 REMARK 500 4 TYR B 112 82.05 57.69 REMARK 500 4 LYS B 183 76.61 69.04 REMARK 500 5 ASP A 2 -93.93 -137.01 REMARK 500 5 GLU A 10 70.56 82.09 REMARK 500 5 LYS A 11 -69.58 -104.17 REMARK 500 5 TYR A 12 99.78 69.09 REMARK 500 5 LYS A 39 -66.95 -97.00 REMARK 500 5 ASN A 40 -158.70 -156.35 REMARK 500 5 SER A 78 109.96 -52.55 REMARK 500 5 LYS A 83 -69.15 -90.68 REMARK 500 5 TYR B 112 94.30 67.50 REMARK 500 5 ILE B 141 -54.73 -26.90 REMARK 500 5 SER B 178 154.01 64.03 REMARK 500 5 LYS B 179 137.37 17.12 REMARK 500 6 TYR A 12 103.36 68.83 REMARK 500 6 TYR B 112 80.25 63.78 REMARK 500 6 LYS B 139 -71.49 -87.92 REMARK 500 7 GLU A 10 70.38 46.18 REMARK 500 7 TYR A 12 97.27 63.76 REMARK 500 7 ILE A 41 -54.63 -23.65 REMARK 500 7 THR A 71 101.88 -54.85 REMARK 500 7 SER A 78 -153.53 50.11 REMARK 500 7 TYR B 112 102.28 67.64 REMARK 500 REMARK 500 THIS ENTRY HAS 147 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2AQ0 A 2 84 UNP Q92889 ERCC4_HUMAN 823 905 DBREF 2AQ0 B 102 184 UNP Q92889 ERCC4_HUMAN 823 905 SEQADV 2AQ0 MET A 1 UNP Q92889 INITIATING METHIONINE SEQADV 2AQ0 MET B 101 UNP Q92889 INITIATING METHIONINE SEQRES 1 A 84 MET ASP SER GLU THR LEU PRO GLU SER GLU LYS TYR ASN SEQRES 2 A 84 PRO GLY PRO GLN ASP PHE LEU LEU LYS MET PRO GLY VAL SEQRES 3 A 84 ASN ALA LYS ASN CYS ARG SER LEU MET HIS HIS VAL LYS SEQRES 4 A 84 ASN ILE ALA GLU LEU ALA ALA LEU SER GLN ASP GLU LEU SEQRES 5 A 84 THR SER ILE LEU GLY ASN ALA ALA ASN ALA LYS GLN LEU SEQRES 6 A 84 TYR ASP PHE ILE HIS THR SER PHE ALA GLU VAL VAL SER SEQRES 7 A 84 LYS GLY LYS GLY LYS LYS SEQRES 1 B 84 MET ASP SER GLU THR LEU PRO GLU SER GLU LYS TYR ASN SEQRES 2 B 84 PRO GLY PRO GLN ASP PHE LEU LEU LYS MET PRO GLY VAL SEQRES 3 B 84 ASN ALA LYS ASN CYS ARG SER LEU MET HIS HIS VAL LYS SEQRES 4 B 84 ASN ILE ALA GLU LEU ALA ALA LEU SER GLN ASP GLU LEU SEQRES 5 B 84 THR SER ILE LEU GLY ASN ALA ALA ASN ALA LYS GLN LEU SEQRES 6 B 84 TYR ASP PHE ILE HIS THR SER PHE ALA GLU VAL VAL SER SEQRES 7 B 84 LYS GLY LYS GLY LYS LYS HELIX 1 1 GLY A 15 LYS A 22 1 8 HELIX 2 2 ASN A 27 VAL A 38 1 12 HELIX 3 3 ASN A 40 LEU A 47 1 8 HELIX 4 4 SER A 48 GLY A 57 1 10 HELIX 5 5 ASN A 58 THR A 71 1 14 HELIX 6 6 ASN B 113 LYS B 122 1 10 HELIX 7 7 ASN B 127 VAL B 138 1 12 HELIX 8 8 ASN B 140 LEU B 147 1 8 HELIX 9 9 SER B 148 GLY B 157 1 10 HELIX 10 10 ASN B 158 HIS B 170 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1