HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-AUG-05 2AQW TITLE STRUCTURE OF PUTATIVE OROTIDINE-MONOPHOSPHATE-DECARBOXYLASE FROM TITLE 2 PLASMODIUM YOELII (PY01515) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE OROTIDINE-MONOPHOSPHATE-DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM YOELII; SOURCE 3 ORGANISM_TAXID: 5861; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: DH5-ALPHA; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: P28-LIC-THROMBIN; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS DECARBOXYLASE PY01515 SGC, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,M.VEDADI,G.WASNEY,Y.ZHAO,J.LEW,Z.ALAM,M.MELONE,I.KOEIERADZKI, AUTHOR 2 A.M.EDWARDS,C.H.ARROWSMITH,J.WEIGELT,M.SUNDSTROM,A.BOCHKAREV,R.HUI, AUTHOR 3 M.AMANI,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 6 13-NOV-24 2AQW 1 REMARK SEQADV LINK REVDAT 5 11-OCT-17 2AQW 1 REMARK REVDAT 4 13-JUL-11 2AQW 1 VERSN REVDAT 3 24-FEB-09 2AQW 1 VERSN REVDAT 2 26-DEC-06 2AQW 1 JRNL REVDAT 1 30-AUG-05 2AQW 0 JRNL AUTH M.VEDADI,J.LEW,J.ARTZ,M.AMANI,Y.ZHAO,A.DONG,G.A.WASNEY, JRNL AUTH 2 M.GAO,T.HILLS,S.BROKX,W.QIU,S.SHARMA,A.DIASSITI,Z.ALAM, JRNL AUTH 3 M.MELONE,A.MULICHAK,A.WERNIMONT,J.BRAY,P.LOPPNAU, JRNL AUTH 4 O.PLOTNIKOVA,K.NEWBERRY,E.SUNDARARAJAN,S.HOUSTON,J.WALKER, JRNL AUTH 5 W.TEMPEL,A.BOCHKAREV,I.KOZIERADZKI,A.EDWARDS,C.ARROWSMITH, JRNL AUTH 6 D.ROOS,K.KAIN,R.HUI JRNL TITL GENOME-SCALE PROTEIN EXPRESSION AND STRUCTURAL BIOLOGY OF JRNL TITL 2 PLASMODIUM FALCIPARUM AND RELATED APICOMPLEXAN ORGANISMS. JRNL REF MOL.BIOCHEM.PARASITOL. V. 151 100 2007 JRNL REFN ISSN 0166-6851 JRNL PMID 17125854 JRNL DOI 10.1016/J.MOLBIOPARA.2006.10.011 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 21145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 710 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1486 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2633 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.53000 REMARK 3 B22 (A**2) : 1.53000 REMARK 3 B33 (A**2) : -2.30000 REMARK 3 B12 (A**2) : 0.77000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.228 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.559 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2696 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3627 ; 1.673 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 6.316 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;41.264 ;26.099 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 509 ;16.224 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;22.000 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 384 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2032 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1372 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1865 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 81 ; 0.174 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.271 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1621 ; 1.086 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2587 ; 1.678 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1193 ; 2.736 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1040 ; 3.837 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2AQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-05; 11-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : APS; ROTATING ANODE REMARK 200 BEAMLINE : 17-ID; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797; 1.54 REMARK 200 MONOCHROMATOR : SI111; VERIMAX REMARK 200 OPTICS : SI111; VERIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIRECT REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21895 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.90000 REMARK 200 R SYM (I) : 0.90000 REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : 0.54600 REMARK 200 FOR SHELL : 2.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M (NH4)2SO4, BIS-TRIS PROPANE PH REMARK 280 7.0 AND 10MM NAI, VAPOR DIFFUSION, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.42800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 182.85600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 137.14200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 228.57000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.71400 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.42800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 182.85600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 228.57000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 137.14200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.71400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 AUTHOR STATES THAT BIOLOGICAL UNIT REMARK 300 FOR THE PROTEIN IS NOT YET KNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 106.74976 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2065 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ILE A 323 REMARK 465 GLU A 324 REMARK 465 ASN A 325 REMARK 465 GLY A 326 REMARK 465 ASP A 327 REMARK 465 ASN A 328 REMARK 465 ILE A 329 REMARK 465 GLU A 330 REMARK 465 GLN A 331 REMARK 465 VAL A 332 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 17 CB CYS A 17 SG -0.100 REMARK 500 MSE A 137 SE MSE A 137 CE -0.468 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 64.11 24.61 REMARK 500 ASP A 23 72.81 -118.77 REMARK 500 ASP A 144 -173.45 179.91 REMARK 500 ASN A 186 55.98 37.58 REMARK 500 ASP A 213 -0.11 62.63 REMARK 500 ALA A 248 57.44 -116.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2003 DBREF 2AQW A 1 332 UNP Q7RPE4 Q7RPE4_PLAYO 1 332 SEQADV 2AQW MSE A 1 UNP Q7RPE4 MET 1 MODIFIED RESIDUE SEQADV 2AQW MSE A 33 UNP Q7RPE4 MET 33 MODIFIED RESIDUE SEQADV 2AQW MSE A 48 UNP Q7RPE4 MET 48 MODIFIED RESIDUE SEQADV 2AQW MSE A 106 UNP Q7RPE4 MET 106 MODIFIED RESIDUE SEQADV 2AQW MSE A 132 UNP Q7RPE4 MET 132 MODIFIED RESIDUE SEQADV 2AQW MSE A 137 UNP Q7RPE4 MET 137 MODIFIED RESIDUE SEQADV 2AQW MSE A 140 UNP Q7RPE4 MET 140 MODIFIED RESIDUE SEQADV 2AQW MSE A 171 UNP Q7RPE4 MET 171 MODIFIED RESIDUE SEQADV 2AQW MSE A 175 UNP Q7RPE4 MET 175 MODIFIED RESIDUE SEQADV 2AQW MSE A 220 UNP Q7RPE4 MET 220 MODIFIED RESIDUE SEQADV 2AQW MSE A 227 UNP Q7RPE4 MET 227 MODIFIED RESIDUE SEQADV 2AQW MSE A 252 UNP Q7RPE4 MET 252 MODIFIED RESIDUE SEQRES 1 A 332 MSE HIS PHE LYS THR LYS LEU LYS ASN ARG ARG SER GLU SEQRES 2 A 332 VAL ASN THR CYS LEU CYS ILE GLY LEU ASP PRO ASP GLU SEQRES 3 A 332 ASP ASP ILE LYS ASN PHE MSE LYS ASN GLU GLU GLN ASN SEQRES 4 A 332 GLY TYR LYS ASN ILE LYS ASN ASN MSE ASN SER ASN ASN SEQRES 5 A 332 ASN GLY ILE GLU ASN ILE ILE LYS ILE GLY LYS GLU ILE SEQRES 6 A 332 LEU LEU THR ASP GLY GLU ASN ILE GLN ASN LEU SER GLU SEQRES 7 A 332 GLU ASP LYS PHE PHE TYR PHE PHE ASN HIS PHE CYS PHE SEQRES 8 A 332 TYR ILE ILE ASN ASN THR LYS GLU TYR ALA LEU VAL TYR SEQRES 9 A 332 LYS MSE ASN PHE ALA PHE TYR ILE PRO TYR GLY SER VAL SEQRES 10 A 332 GLY ILE ASN ALA LEU LYS ASN VAL PHE ASP TYR LEU ASN SEQRES 11 A 332 SER MSE ASN ILE PRO THR MSE LEU ASP MSE LYS ILE ASN SEQRES 12 A 332 ASP ILE GLY ASN THR VAL LYS ASN TYR ARG LYS PHE ILE SEQRES 13 A 332 PHE GLU TYR LEU LYS SER ASP SER CYS THR ILE ASN VAL SEQRES 14 A 332 TYR MSE GLY THR ASN MSE LEU LYS ASP ILE CYS PHE ASP SEQRES 15 A 332 TYR GLU LYS ASN LYS TYR TYR SER ALA TYR VAL LEU ILE SEQRES 16 A 332 LYS THR THR ASN LYS ASP SER PHE ILE PHE GLN ASN GLU SEQRES 17 A 332 LEU SER ILE ASN ASP LYS GLN ALA TYR ILE VAL MSE ALA SEQRES 18 A 332 ASP GLU THR GLN LYS MSE ALA THR GLU LEU LYS ILE GLU SEQRES 19 A 332 GLN ASN ASN GLU PHE ILE GLY PHE VAL VAL GLY SER ASN SEQRES 20 A 332 ALA PHE GLU GLU MSE LYS ILE ILE ARG ASN LYS PHE PRO SEQRES 21 A 332 ASP SER TYR ILE LEU SER PRO GLY ILE GLY ALA GLN ASN SEQRES 22 A 332 GLY ASP LEU TYR LYS THR LEU LYS ASN GLY TYR ASN LYS SEQRES 23 A 332 ASP TYR GLU LYS LEU LEU ILE ASN VAL GLY ARG ALA ILE SEQRES 24 A 332 THR LYS SER PRO ASP PRO LYS LYS SER SER GLU SER TYR SEQRES 25 A 332 TYR ASN GLN ILE ILE GLN ILE PHE LYS ASP ILE GLU ASN SEQRES 26 A 332 GLY ASP ASN ILE GLU GLN VAL MODRES 2AQW MSE A 33 MET SELENOMETHIONINE MODRES 2AQW MSE A 48 MET SELENOMETHIONINE MODRES 2AQW MSE A 106 MET SELENOMETHIONINE MODRES 2AQW MSE A 132 MET SELENOMETHIONINE MODRES 2AQW MSE A 137 MET SELENOMETHIONINE MODRES 2AQW MSE A 140 MET SELENOMETHIONINE MODRES 2AQW MSE A 171 MET SELENOMETHIONINE MODRES 2AQW MSE A 175 MET SELENOMETHIONINE MODRES 2AQW MSE A 220 MET SELENOMETHIONINE MODRES 2AQW MSE A 227 MET SELENOMETHIONINE MODRES 2AQW MSE A 252 MET SELENOMETHIONINE HET MSE A 33 8 HET MSE A 48 8 HET MSE A 106 8 HET MSE A 132 8 HET MSE A 137 8 HET MSE A 140 8 HET MSE A 171 8 HET MSE A 175 8 HET MSE A 220 8 HET MSE A 227 8 HET MSE A 252 8 HET IOD A1001 1 HET IOD A1002 1 HET IOD A1003 1 HET IOD A1004 1 HET IOD A1005 1 HET IOD A1006 1 HET SO4 A2001 5 HET SO4 A2002 5 HET SO4 A2003 5 HETNAM MSE SELENOMETHIONINE HETNAM IOD IODIDE ION HETNAM SO4 SULFATE ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 IOD 6(I 1-) FORMUL 8 SO4 3(O4 S 2-) FORMUL 11 HOH *168(H2 O) HELIX 1 1 HIS A 2 ASN A 15 1 14 HELIX 2 2 ASP A 25 GLY A 40 1 16 HELIX 3 3 TYR A 41 MSE A 48 1 8 HELIX 4 4 ASN A 49 ILE A 59 1 11 HELIX 5 5 GLY A 62 LEU A 67 1 6 HELIX 6 6 ASP A 69 LEU A 76 5 8 HELIX 7 7 SER A 77 LYS A 98 1 22 HELIX 8 8 GLU A 99 ALA A 101 5 3 HELIX 9 9 ALA A 109 TYR A 114 5 6 HELIX 10 10 GLY A 115 MSE A 132 1 18 HELIX 11 11 ILE A 145 GLU A 158 1 14 HELIX 12 12 MSE A 175 CYS A 180 1 6 HELIX 13 13 SER A 202 ASN A 207 1 6 HELIX 14 14 ALA A 216 LEU A 231 1 16 HELIX 15 15 LYS A 232 ASN A 237 5 6 HELIX 16 16 ALA A 248 PHE A 259 1 12 HELIX 17 17 ASP A 275 TYR A 284 1 10 HELIX 18 18 ASP A 287 GLU A 289 5 3 HELIX 19 19 GLY A 296 LYS A 301 1 6 HELIX 20 20 ASP A 304 LYS A 321 1 18 SHEET 1 A 9 LEU A 18 GLY A 21 0 SHEET 2 A 9 VAL A 103 ASN A 107 1 O VAL A 103 N ILE A 20 SHEET 3 A 9 THR A 136 ILE A 142 1 O MSE A 137 N MSE A 106 SHEET 4 A 9 CYS A 165 ILE A 167 1 O THR A 166 N ILE A 142 SHEET 5 A 9 ALA A 191 LYS A 196 1 O TYR A 192 N CYS A 165 SHEET 6 A 9 ILE A 240 VAL A 244 1 O GLY A 241 N ALA A 191 SHEET 7 A 9 ILE A 264 ILE A 269 1 O LEU A 265 N PHE A 242 SHEET 8 A 9 LEU A 291 VAL A 295 1 O LEU A 292 N SER A 266 SHEET 9 A 9 LEU A 18 GLY A 21 1 N CYS A 19 O ILE A 293 SHEET 1 B 2 PHE A 181 ASP A 182 0 SHEET 2 B 2 LYS A 187 TYR A 188 -1 O LYS A 187 N ASP A 182 SHEET 1 C 2 SER A 210 ILE A 211 0 SHEET 2 C 2 LYS A 214 GLN A 215 -1 O LYS A 214 N ILE A 211 LINK C PHE A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N LYS A 34 1555 1555 1.33 LINK C ASN A 47 N MSE A 48 1555 1555 1.34 LINK C MSE A 48 N ASN A 49 1555 1555 1.32 LINK C LYS A 105 N MSE A 106 1555 1555 1.34 LINK C MSE A 106 N ASN A 107 1555 1555 1.33 LINK C SER A 131 N MSE A 132 1555 1555 1.34 LINK C MSE A 132 N ASN A 133 1555 1555 1.32 LINK C THR A 136 N MSE A 137 1555 1555 1.34 LINK C MSE A 137 N LEU A 138 1555 1555 1.33 LINK C ASP A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N LYS A 141 1555 1555 1.33 LINK C TYR A 170 N MSE A 171 1555 1555 1.34 LINK C MSE A 171 N GLY A 172 1555 1555 1.35 LINK C ASN A 174 N MSE A 175 1555 1555 1.35 LINK C MSE A 175 N LEU A 176 1555 1555 1.33 LINK C VAL A 219 N MSE A 220 1555 1555 1.33 LINK C MSE A 220 N ALA A 221 1555 1555 1.34 LINK C LYS A 226 N MSE A 227 1555 1555 1.33 LINK C MSE A 227 N ALA A 228 1555 1555 1.34 LINK C GLU A 251 N MSE A 252 1555 1555 1.34 LINK C MSE A 252 N LYS A 253 1555 1555 1.33 SITE 1 AC1 2 GLY A 70 HOH A2111 SITE 1 AC2 3 ALA A 271 HOH A2068 HOH A2126 SITE 1 AC3 2 ARG A 10 HOH A2130 SITE 1 AC4 6 ASN A 35 ASN A 39 LYS A 42 ASN A 43 SITE 2 AC4 6 ASN A 49 HOH A2105 SITE 1 AC5 8 GLN A 272 GLY A 296 ARG A 297 HOH A2012 SITE 2 AC5 8 HOH A2021 HOH A2022 HOH A2039 HOH A2050 SITE 1 AC6 7 LYS A 150 ARG A 153 ASP A 182 TYR A 183 SITE 2 AC6 7 GLU A 184 HOH A2053 HOH A2081 CRYST1 61.632 61.632 274.284 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016225 0.009368 0.000000 0.00000 SCALE2 0.000000 0.018735 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003646 0.00000