HEADER IMMUNE SYSTEM 19-AUG-05 2ARJ TITLE CD8ALPHA-ALPHA IN COMPLEX WITH YTS 105.18 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: YTS 105.18 ANTIGEN BINDING REGION LIGHT CHAIN; COMPND 3 CHAIN: L, A; COMPND 4 FRAGMENT: YTS 105.18 FAB LIGHT CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: YTS 105.18 ANTIGEN BINDING REGION HEAVY CHAIN; COMPND 7 CHAIN: H, B; COMPND 8 FRAGMENT: YTS 105.18 FAB HEAVY CHAIN; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD8 ALPHA CHAIN; COMPND 11 CHAIN: R, Q; COMPND 12 FRAGMENT: CD8ALPHA-ALPHA; COMPND 13 SYNONYM: T-CELL SURFACE GLYCOPROTEIN LYT-2; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 STRAIN: Y3 MYELOMA; SOURCE 6 CELL_LINE: HYBRIDOMA; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 9 ORGANISM_COMMON: NORWAY RAT; SOURCE 10 ORGANISM_TAXID: 10116; SOURCE 11 STRAIN: Y3 MYELOMA; SOURCE 12 CELL_LINE: HYBRIDOMA; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 16 ORGANISM_TAXID: 10090; SOURCE 17 GENE: CD8A, LYT-2, LYT2; SOURCE 18 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 19 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: SC2 CELLS; SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PMT KEYWDS PROTEIN-PROTEIN COMPLEX, ANTIBODY FAB, IMMUNE SYSTEM, IMMUNOGLOBULIN KEYWDS 2 DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR D.A.SHORE,L.TEYTON,R.A.DWEK,P.M.RUDD,I.A.WILSON REVDAT 4 23-AUG-23 2ARJ 1 REMARK REVDAT 3 13-JUL-11 2ARJ 1 VERSN REVDAT 2 24-FEB-09 2ARJ 1 VERSN REVDAT 1 30-MAY-06 2ARJ 0 JRNL AUTH D.A.SHORE,L.TEYTON,R.A.DWEK,P.M.RUDD,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF THE TCR CO-RECEPTOR CD8ALPHAALPHA IN JRNL TITL 2 COMPLEX WITH MONOCLONAL ANTIBODY YTS 105.18 FAB FRAGMENT AT JRNL TITL 3 2.88 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 358 347 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16530222 JRNL DOI 10.1016/J.JMB.2006.02.016 REMARK 2 REMARK 2 RESOLUTION. 2.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 25403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1346 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1609 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 66.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.60000 REMARK 3 B22 (A**2) : -2.91000 REMARK 3 B33 (A**2) : 0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.468 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.351 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 41.040 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.862 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8532 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11623 ; 1.684 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1067 ; 7.765 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 345 ;35.963 ;24.435 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1369 ;20.978 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;16.768 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1313 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6422 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3639 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5735 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 286 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.231 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5448 ; 1.351 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8738 ; 2.000 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3523 ; 4.148 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2885 ; 5.850 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 5 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : L A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 L 1 L 108 3 REMARK 3 1 A 1 A 108 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 L (A): 432 ; 0.07 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 L (A): 417 ; 0.44 ; 5.00 REMARK 3 TIGHT THERMAL 1 L (A**2): 432 ; 0.10 ; 0.50 REMARK 3 LOOSE THERMAL 1 L (A**2): 417 ; 2.60 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : L A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 L 109 L 211 3 REMARK 3 1 A 109 A 211 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 L (A): 412 ; 0.05 ; 0.05 REMARK 3 LOOSE POSITIONAL 2 L (A): 386 ; 0.18 ; 5.00 REMARK 3 TIGHT THERMAL 2 L (A**2): 412 ; 0.11 ; 0.50 REMARK 3 LOOSE THERMAL 2 L (A**2): 386 ; 2.67 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : B H REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 110 3 REMARK 3 1 H 1 H 110 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 B (A): 456 ; 0.04 ; 0.05 REMARK 3 LOOSE POSITIONAL 3 B (A): 428 ; 0.33 ; 5.00 REMARK 3 TIGHT THERMAL 3 B (A**2): 456 ; 0.10 ; 0.50 REMARK 3 LOOSE THERMAL 3 B (A**2): 428 ; 2.62 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : B H REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 111 B 213 3 REMARK 3 1 H 111 H 213 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 4 B (A): 392 ; 0.33 ; 0.05 REMARK 3 LOOSE POSITIONAL 4 B (A): 317 ; 0.40 ; 5.00 REMARK 3 TIGHT THERMAL 4 B (A**2): 392 ; 0.26 ; 0.50 REMARK 3 LOOSE THERMAL 4 B (A**2): 317 ; 2.73 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : R Q REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 R 4 R 122 2 REMARK 3 1 Q 4 Q 122 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 5 R (A): 460 ; 0.11 ; 0.05 REMARK 3 MEDIUM POSITIONAL 5 R (A): 457 ; 0.48 ; 0.50 REMARK 3 TIGHT THERMAL 5 R (A**2): 460 ; 1.10 ; 0.50 REMARK 3 MEDIUM THERMAL 5 R (A**2): 457 ; 1.10 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 67.9764 49.9908 23.2239 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: -0.1305 REMARK 3 T33: -0.1678 T12: 0.0637 REMARK 3 T13: 0.0200 T23: -0.0606 REMARK 3 L TENSOR REMARK 3 L11: 3.4300 L22: 3.9135 REMARK 3 L33: 1.0740 L12: 0.6726 REMARK 3 L13: -1.4183 L23: -1.3529 REMARK 3 S TENSOR REMARK 3 S11: 0.0737 S12: -0.3595 S13: 0.3395 REMARK 3 S21: 0.5770 S22: -0.0385 S23: 0.2212 REMARK 3 S31: -0.3257 S32: -0.1554 S33: -0.0351 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 108 REMARK 3 ORIGIN FOR THE GROUP (A): 78.5715 106.1082 -18.4159 REMARK 3 T TENSOR REMARK 3 T11: -0.1079 T22: -0.1798 REMARK 3 T33: -0.1976 T12: 0.0305 REMARK 3 T13: 0.0068 T23: -0.0715 REMARK 3 L TENSOR REMARK 3 L11: 2.2306 L22: 3.2516 REMARK 3 L33: 3.4061 L12: -0.1381 REMARK 3 L13: 0.9248 L23: -0.5974 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.2036 S13: -0.2983 REMARK 3 S21: -0.2769 S22: 0.0047 S23: 0.0032 REMARK 3 S31: 0.4165 S32: 0.2398 S33: -0.0104 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 110 REMARK 3 ORIGIN FOR THE GROUP (A): 86.2881 42.0689 13.2258 REMARK 3 T TENSOR REMARK 3 T11: -0.1359 T22: -0.1798 REMARK 3 T33: -0.1133 T12: -0.0761 REMARK 3 T13: -0.0339 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 3.2942 L22: 3.7995 REMARK 3 L33: 2.4926 L12: -1.1006 REMARK 3 L13: 1.2221 L23: -0.6153 REMARK 3 S TENSOR REMARK 3 S11: 0.0789 S12: 0.0100 S13: 0.1919 REMARK 3 S21: 0.3120 S22: -0.0130 S23: -0.5181 REMARK 3 S31: -0.0437 S32: 0.3122 S33: -0.0658 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 111 B 213 REMARK 3 ORIGIN FOR THE GROUP (A): 70.3544 15.5456 16.8479 REMARK 3 T TENSOR REMARK 3 T11: -0.2221 T22: -0.2251 REMARK 3 T33: -0.1866 T12: 0.0546 REMARK 3 T13: 0.0077 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 6.3475 L22: 2.0997 REMARK 3 L33: 3.8192 L12: 0.6283 REMARK 3 L13: 0.9159 L23: -0.0030 REMARK 3 S TENSOR REMARK 3 S11: -0.2399 S12: 0.4003 S13: -0.0286 REMARK 3 S21: 0.2093 S22: 0.1371 S23: 0.0976 REMARK 3 S31: 0.0128 S32: -0.0591 S33: 0.1028 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 110 REMARK 3 ORIGIN FOR THE GROUP (A): 87.9911 114.1213 0.0900 REMARK 3 T TENSOR REMARK 3 T11: -0.2132 T22: -0.0877 REMARK 3 T33: -0.1455 T12: 0.0458 REMARK 3 T13: 0.0188 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.2918 L22: 2.8025 REMARK 3 L33: 3.4871 L12: -0.4320 REMARK 3 L13: 0.8511 L23: 0.2145 REMARK 3 S TENSOR REMARK 3 S11: 0.0614 S12: -0.0061 S13: -0.0050 REMARK 3 S21: 0.2703 S22: -0.0675 S23: -0.3637 REMARK 3 S31: 0.2112 S32: 0.5198 S33: 0.0061 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 111 H 213 REMARK 3 ORIGIN FOR THE GROUP (A): 74.6006 139.8649 -11.1085 REMARK 3 T TENSOR REMARK 3 T11: -0.1357 T22: -0.0872 REMARK 3 T33: -0.1486 T12: -0.0717 REMARK 3 T13: 0.1215 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 7.5263 L22: 3.5947 REMARK 3 L33: 4.8237 L12: -1.3039 REMARK 3 L13: 2.8461 L23: -1.1597 REMARK 3 S TENSOR REMARK 3 S11: 0.0837 S12: -0.3583 S13: 0.2117 REMARK 3 S21: 0.1056 S22: 0.0554 S23: 0.3939 REMARK 3 S31: -0.4054 S32: -0.6213 S33: -0.1390 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 109 L 211 REMARK 3 ORIGIN FOR THE GROUP (A): 77.3939 143.1047 -26.4721 REMARK 3 T TENSOR REMARK 3 T11: -0.1489 T22: -0.0582 REMARK 3 T33: -0.1160 T12: 0.0187 REMARK 3 T13: -0.0132 T23: 0.0732 REMARK 3 L TENSOR REMARK 3 L11: 2.6925 L22: 5.6578 REMARK 3 L33: 2.6507 L12: 1.2494 REMARK 3 L13: 0.4550 L23: 0.3754 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: 0.4638 S13: 0.4205 REMARK 3 S21: -0.2946 S22: -0.0370 S23: 0.0578 REMARK 3 S31: -0.2989 S32: 0.2308 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): 64.0346 13.4249 31.4629 REMARK 3 T TENSOR REMARK 3 T11: -0.1375 T22: -0.1221 REMARK 3 T33: -0.2083 T12: 0.0234 REMARK 3 T13: 0.0036 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 1.8498 L22: 3.8946 REMARK 3 L33: 1.2400 L12: -0.6172 REMARK 3 L13: -0.5499 L23: -1.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.1057 S12: -0.2445 S13: 0.1010 REMARK 3 S21: 0.2195 S22: 0.0425 S23: -0.2285 REMARK 3 S31: -0.0953 S32: 0.0243 S33: -0.1482 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : R 4 R 122 REMARK 3 ORIGIN FOR THE GROUP (A): 78.7277 66.8513 -0.5026 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: -0.1482 REMARK 3 T33: 0.1388 T12: -0.0979 REMARK 3 T13: -0.0262 T23: 0.0921 REMARK 3 L TENSOR REMARK 3 L11: 3.2530 L22: 4.1276 REMARK 3 L33: 4.6844 L12: -1.0430 REMARK 3 L13: -0.2138 L23: -0.2618 REMARK 3 S TENSOR REMARK 3 S11: 0.1932 S12: 0.2215 S13: 0.2506 REMARK 3 S21: 0.0497 S22: -0.1082 S23: 0.0613 REMARK 3 S31: -0.2038 S32: -0.1113 S33: -0.0850 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Q 4 Q 122 REMARK 3 ORIGIN FOR THE GROUP (A): 76.2571 88.2431 7.1771 REMARK 3 T TENSOR REMARK 3 T11: 0.3404 T22: -0.0951 REMARK 3 T33: 0.1605 T12: 0.0260 REMARK 3 T13: 0.0738 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 3.4433 L22: 3.2173 REMARK 3 L33: 4.1326 L12: 1.4271 REMARK 3 L13: 0.0479 L23: 0.3925 REMARK 3 S TENSOR REMARK 3 S11: 0.1193 S12: -0.2114 S13: -0.1393 REMARK 3 S21: 0.4980 S22: -0.0378 S23: 0.4463 REMARK 3 S31: 0.2626 S32: -0.3581 S33: -0.0815 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ARJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DIRECT COUPLING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.880 REMARK 200 RESOLUTION RANGE LOW (A) : 49.629 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : 0.15400 REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : 0.69000 REMARK 200 FOR SHELL : 1775. REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY: 1ACY FOR YTS 105.18 FAB, PDB ENTRY: REMARK 200 1BQH FOR CD8 COMPONENT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3,000, 0.1M SODIUM ACETATE, PH REMARK 280 5.1, VAPOR DIFFUSION, TEMPERATURE 299K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.67200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.76100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.56750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.76100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.67200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.56750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP H 132 REMARK 465 THR H 133 REMARK 465 THR H 134 REMARK 465 ASP B 132 REMARK 465 THR B 133 REMARK 465 THR B 134 REMARK 465 LYS R 1 REMARK 465 PRO R 2 REMARK 465 GLN R 3 REMARK 465 LEU R 69 REMARK 465 ASN R 70 REMARK 465 SER R 71 REMARK 465 SER R 72 REMARK 465 LYS Q 1 REMARK 465 PRO Q 2 REMARK 465 GLN Q 3 REMARK 465 LEU Q 69 REMARK 465 ASN Q 70 REMARK 465 SER Q 71 REMARK 465 SER Q 72 REMARK 465 ASN Q 123 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP L 1 N ASP L 1 CA 0.325 REMARK 500 GLY H 127 CA GLY H 127 C 0.460 REMARK 500 GLY H 127 C GLY H 127 O -0.167 REMARK 500 CYS H 128 CB CYS H 128 SG 0.103 REMARK 500 ILE H 223 C VAL H 226 N -0.144 REMARK 500 VAL H 226 CB VAL H 226 CG1 0.134 REMARK 500 VAL H 226 CA VAL H 226 C 0.198 REMARK 500 PRO H 227 C ARG H 228 N 0.142 REMARK 500 ARG H 228 N ARG H 228 CA -0.124 REMARK 500 ARG H 228 C ARG H 228 OXT 0.137 REMARK 500 ASP A 1 N ASP A 1 CA 0.370 REMARK 500 ASP A 1 CG ASP A 1 OD1 0.138 REMARK 500 ASP A 1 C ASP A 1 O 0.146 REMARK 500 PRO B 126 CD PRO B 126 N 0.186 REMARK 500 GLY B 127 CA GLY B 127 C 0.182 REMARK 500 GLY B 127 C GLY B 127 O -0.162 REMARK 500 CYS B 128 CA CYS B 128 CB 0.147 REMARK 500 CYS B 128 CB CYS B 128 SG -0.237 REMARK 500 PRO B 227 CD PRO B 227 N 0.133 REMARK 500 SER R 31 CB SER R 31 OG 0.082 REMARK 500 THR R 81 C THR R 81 O 0.138 REMARK 500 THR Q 81 C THR Q 81 O 0.247 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 90 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU H 4 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 PRO H 198 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 VAL H 226 CG1 - CB - CG2 ANGL. DEV. = 17.8 DEGREES REMARK 500 VAL H 226 CA - CB - CG1 ANGL. DEV. = -13.4 DEGREES REMARK 500 VAL H 226 CA - C - O ANGL. DEV. = 13.4 DEGREES REMARK 500 PRO H 227 CA - C - O ANGL. DEV. = 15.7 DEGREES REMARK 500 PRO H 227 CA - C - N ANGL. DEV. = -20.8 DEGREES REMARK 500 ARG H 228 C - N - CA ANGL. DEV. = -16.0 DEGREES REMARK 500 LEU B 4 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 PRO B 126 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 GLY B 127 C - N - CA ANGL. DEV. = -13.3 DEGREES REMARK 500 GLY B 127 CA - C - O ANGL. DEV. = 12.4 DEGREES REMARK 500 GLY B 127 O - C - N ANGL. DEV. = -15.6 DEGREES REMARK 500 CYS B 128 C - N - CA ANGL. DEV. = -17.9 DEGREES REMARK 500 PRO B 149 C - N - CA ANGL. DEV. = 21.1 DEGREES REMARK 500 PRO B 149 C - N - CD ANGL. DEV. = -18.8 DEGREES REMARK 500 PRO B 151 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 PRO B 198 C - N - CA ANGL. DEV. = 17.1 DEGREES REMARK 500 PRO B 198 C - N - CD ANGL. DEV. = -15.3 DEGREES REMARK 500 PRO B 227 O - C - N ANGL. DEV. = 11.0 DEGREES REMARK 500 ASN Q 82 C - N - CA ANGL. DEV. = -15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE L 2 92.99 43.84 REMARK 500 ARG L 30 -125.23 54.51 REMARK 500 ALA L 51 -43.43 78.18 REMARK 500 SER L 77 85.97 52.25 REMARK 500 ALA L 83 109.87 -52.39 REMARK 500 ALA L 84 -174.10 -172.53 REMARK 500 ASN L 190 -60.85 -103.22 REMARK 500 LYS L 199 -36.62 -38.98 REMARK 500 PRO H 14 152.15 -49.72 REMARK 500 SER H 15 -16.64 70.22 REMARK 500 SER H 82B 72.23 33.22 REMARK 500 ASP H 85 2.70 -59.85 REMARK 500 CYS H 128 50.21 -170.93 REMARK 500 SER H 167 -30.60 -141.83 REMARK 500 SER H 168 -94.89 -26.00 REMARK 500 TRP H 196 179.90 -51.51 REMARK 500 PRO H 198 -62.90 7.75 REMARK 500 PRO H 227 -166.51 -35.68 REMARK 500 ILE A 2 87.40 56.47 REMARK 500 ALA A 15 108.74 -43.46 REMARK 500 VAL A 29 22.88 -144.93 REMARK 500 ARG A 30 -124.34 53.46 REMARK 500 ALA A 51 -41.38 73.66 REMARK 500 SER A 77 86.63 43.90 REMARK 500 ALA A 83 105.64 -52.11 REMARK 500 ALA A 84 -178.94 -174.01 REMARK 500 ASN A 190 -65.28 -101.50 REMARK 500 LYS A 199 -38.21 -39.52 REMARK 500 SER B 15 -11.20 67.19 REMARK 500 SER B 61 -50.38 -27.32 REMARK 500 SER B 82B 70.58 32.56 REMARK 500 ASP B 85 3.09 -57.65 REMARK 500 PRO B 126 132.39 -39.43 REMARK 500 GLU B 150 -166.40 -44.98 REMARK 500 PRO B 151 121.84 15.04 REMARK 500 SER B 168 -81.99 -35.08 REMARK 500 PRO B 175 130.30 -39.63 REMARK 500 GLN B 181 114.04 -161.64 REMARK 500 THR B 202 133.95 -38.85 REMARK 500 PRO B 227 171.46 -52.79 REMARK 500 SER R 31 16.91 165.68 REMARK 500 SER R 33 -168.09 -103.63 REMARK 500 GLN R 34 -141.70 -74.06 REMARK 500 PRO R 48 78.18 -56.07 REMARK 500 VAL R 53 -57.09 -120.33 REMARK 500 SER R 59 -84.71 -57.33 REMARK 500 LYS R 62 95.51 -163.33 REMARK 500 ASP R 80 172.76 -49.20 REMARK 500 THR R 81 -133.80 -51.96 REMARK 500 ASN R 82 -131.72 32.78 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP L 1 ILE L 2 -149.01 REMARK 500 TRP H 196 PRO H 198 -109.39 REMARK 500 GLU B 150 PRO B 151 -119.41 REMARK 500 TRP B 196 PRO B 198 -32.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY B 127 14.52 REMARK 500 CYS B 128 -13.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NEZ RELATED DB: PDB REMARK 900 MOUSE CD8ALPHA-ALPHA IN COMPLEX WITH TL REMARK 900 RELATED ID: 1BQH RELATED DB: PDB REMARK 900 MOUSE CD8ALPHA-ALPHA IN COMPLEX WITH PMHC REMARK 900 RELATED ID: 1AKJ RELATED DB: PDB REMARK 900 HUMAN CD8ALPHA-ALPHA IN COMPLEX WITH PMHC REMARK 900 RELATED ID: 1CD8 RELATED DB: PDB REMARK 900 HUMAN CD8ALPHA-ALPHA IGSF DOMIAN DIMER REMARK 900 RELATED ID: 1Q69 RELATED DB: PDB REMARK 900 CD8ALPHA CHAIN CYTOPLASMIC DOMAIN AND LCK (FRAGMENT) DBREF 2ARJ R 1 123 UNP P01731 CD8A_MOUSE 28 150 DBREF 2ARJ Q 1 123 UNP P01731 CD8A_MOUSE 28 150 DBREF 2ARJ L 1 211 PDB 2ARJ 2ARJ 1 211 DBREF 2ARJ H 1 220 UNP Q5M839 Q5M839_RAT 20 228 DBREF 2ARJ A 1 211 PDB 2ARJ 2ARJ 1 211 DBREF 2ARJ B 1 220 UNP Q5M839 Q5M839_RAT 20 228 SEQRES 1 L 211 ASP ILE VAL MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 L 211 SER ALA GLY GLU ARG VAL THR LEU ASN CYS LYS ALA SER SEQRES 3 L 211 GLN ASN VAL ARG ASN ASN ILE ALA TRP TYR GLN GLN LYS SEQRES 4 L 211 PRO GLY GLN SER PRO LYS LEU LEU ILE TYR TYR ALA SER SEQRES 5 L 211 TYR ARG TYR THR GLY VAL PRO ASP ARG PHE THR GLY ASP SEQRES 6 L 211 GLY PHE GLY THR ASP PHE THR LEU ALA ILE ASN SER VAL SEQRES 7 L 211 GLN ALA ASP ASP ALA ALA PHE TYR TYR CYS GLN ARG ILE SEQRES 8 L 211 TYR ASN SER PRO TYR THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 L 211 GLU LEU ILE ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 211 PHE PRO PRO SER MET GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 211 SER VAL VAL CYS PHE VAL ASN ASN PHE TYR PRO ARG ASP SEQRES 12 L 211 ILE SER VAL LYS TRP LYS ILE ASP GLY SER GLU GLN ARG SEQRES 13 L 211 ASP GLY VAL LEU ASP SER VAL THR ASP GLN ASP SER LYS SEQRES 14 L 211 ASP SER THR TYR SER MET SER SER THR LEU SER LEU THR SEQRES 15 L 211 LYS VAL GLU TYR GLU ARG HIS ASN LEU TYR THR CYS GLU SEQRES 16 L 211 VAL VAL HIS LYS THR SER SER SER PRO VAL VAL LYS SER SEQRES 17 L 211 PHE ASN ARG SEQRES 1 H 215 GLN VAL GLN LEU LYS GLU SER GLY PRO GLY LEU VAL GLN SEQRES 2 H 215 PRO SER GLN THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 215 PHE SER LEU THR SER ASN SER VAL HIS TRP VAL ARG GLN SEQRES 4 H 215 PRO PRO GLY LYS GLY LEU GLU TRP MET GLY GLY ILE TRP SEQRES 5 H 215 GLY ASP GLY ASP THR ASP TYR ASN SER ALA LEU LYS SER SEQRES 6 H 215 ARG LEU SER ILE SER ARG ASP THR SER LYS ASN GLN VAL SEQRES 7 H 215 PHE LEU LYS MET ASN SER LEU GLN THR ASP ASP THR ALA SEQRES 8 H 215 ILE TYR PHE CYS THR PRO LEU ILE GLY SER TRP TYR PHE SEQRES 9 H 215 ASP PHE TRP GLY PRO GLY THR MET VAL THR ALA SER SER SEQRES 10 H 215 ALA GLN THR THR ALA PRO SER VAL TYR PRO LEU ALA PRO SEQRES 11 H 215 GLY CYS GLY ASP THR THR SER SER THR VAL THR LEU GLY SEQRES 12 H 215 CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 215 THR TRP ASN SER GLY ALA LEU SER SER ASP VAL HIS THR SEQRES 14 H 215 PHE PRO ALA VAL LEU GLN SER GLY LEU TYR THR LEU THR SEQRES 15 H 215 SER SER VAL THR SER SER THR TRP PRO SER GLN THR VAL SEQRES 16 H 215 THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL SEQRES 17 H 215 ASP GLN LYS ILE VAL PRO ARG SEQRES 1 A 211 ASP ILE VAL MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 A 211 SER ALA GLY GLU ARG VAL THR LEU ASN CYS LYS ALA SER SEQRES 3 A 211 GLN ASN VAL ARG ASN ASN ILE ALA TRP TYR GLN GLN LYS SEQRES 4 A 211 PRO GLY GLN SER PRO LYS LEU LEU ILE TYR TYR ALA SER SEQRES 5 A 211 TYR ARG TYR THR GLY VAL PRO ASP ARG PHE THR GLY ASP SEQRES 6 A 211 GLY PHE GLY THR ASP PHE THR LEU ALA ILE ASN SER VAL SEQRES 7 A 211 GLN ALA ASP ASP ALA ALA PHE TYR TYR CYS GLN ARG ILE SEQRES 8 A 211 TYR ASN SER PRO TYR THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 A 211 GLU LEU ILE ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 A 211 PHE PRO PRO SER MET GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 A 211 SER VAL VAL CYS PHE VAL ASN ASN PHE TYR PRO ARG ASP SEQRES 12 A 211 ILE SER VAL LYS TRP LYS ILE ASP GLY SER GLU GLN ARG SEQRES 13 A 211 ASP GLY VAL LEU ASP SER VAL THR ASP GLN ASP SER LYS SEQRES 14 A 211 ASP SER THR TYR SER MET SER SER THR LEU SER LEU THR SEQRES 15 A 211 LYS VAL GLU TYR GLU ARG HIS ASN LEU TYR THR CYS GLU SEQRES 16 A 211 VAL VAL HIS LYS THR SER SER SER PRO VAL VAL LYS SER SEQRES 17 A 211 PHE ASN ARG SEQRES 1 B 215 GLN VAL GLN LEU LYS GLU SER GLY PRO GLY LEU VAL GLN SEQRES 2 B 215 PRO SER GLN THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 B 215 PHE SER LEU THR SER ASN SER VAL HIS TRP VAL ARG GLN SEQRES 4 B 215 PRO PRO GLY LYS GLY LEU GLU TRP MET GLY GLY ILE TRP SEQRES 5 B 215 GLY ASP GLY ASP THR ASP TYR ASN SER ALA LEU LYS SER SEQRES 6 B 215 ARG LEU SER ILE SER ARG ASP THR SER LYS ASN GLN VAL SEQRES 7 B 215 PHE LEU LYS MET ASN SER LEU GLN THR ASP ASP THR ALA SEQRES 8 B 215 ILE TYR PHE CYS THR PRO LEU ILE GLY SER TRP TYR PHE SEQRES 9 B 215 ASP PHE TRP GLY PRO GLY THR MET VAL THR ALA SER SER SEQRES 10 B 215 ALA GLN THR THR ALA PRO SER VAL TYR PRO LEU ALA PRO SEQRES 11 B 215 GLY CYS GLY ASP THR THR SER SER THR VAL THR LEU GLY SEQRES 12 B 215 CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 B 215 THR TRP ASN SER GLY ALA LEU SER SER ASP VAL HIS THR SEQRES 14 B 215 PHE PRO ALA VAL LEU GLN SER GLY LEU TYR THR LEU THR SEQRES 15 B 215 SER SER VAL THR SER SER THR TRP PRO SER GLN THR VAL SEQRES 16 B 215 THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL SEQRES 17 B 215 ASP GLN LYS ILE VAL PRO ARG SEQRES 1 R 123 LYS PRO GLN ALA PRO GLU LEU ARG ILE PHE PRO LYS LYS SEQRES 2 R 123 MET ASP ALA GLU LEU GLY GLN LYS VAL ASP LEU VAL CYS SEQRES 3 R 123 GLU VAL LEU GLY SER VAL SER GLN GLY CYS SER TRP LEU SEQRES 4 R 123 PHE GLN ASN SER SER SER LYS LEU PRO GLN PRO THR PHE SEQRES 5 R 123 VAL VAL TYR MET ALA SER SER HIS ASN LYS ILE THR TRP SEQRES 6 R 123 ASP GLU LYS LEU ASN SER SER LYS LEU PHE SER ALA MET SEQRES 7 R 123 ARG ASP THR ASN ASN LYS TYR VAL LEU THR LEU ASN LYS SEQRES 8 R 123 PHE SER LYS GLU ASN GLU GLY TYR TYR PHE CYS SER VAL SEQRES 9 R 123 ILE SER ASN SER VAL MET TYR PHE SER SER VAL VAL PRO SEQRES 10 R 123 VAL LEU GLN LYS VAL ASN SEQRES 1 Q 123 LYS PRO GLN ALA PRO GLU LEU ARG ILE PHE PRO LYS LYS SEQRES 2 Q 123 MET ASP ALA GLU LEU GLY GLN LYS VAL ASP LEU VAL CYS SEQRES 3 Q 123 GLU VAL LEU GLY SER VAL SER GLN GLY CYS SER TRP LEU SEQRES 4 Q 123 PHE GLN ASN SER SER SER LYS LEU PRO GLN PRO THR PHE SEQRES 5 Q 123 VAL VAL TYR MET ALA SER SER HIS ASN LYS ILE THR TRP SEQRES 6 Q 123 ASP GLU LYS LEU ASN SER SER LYS LEU PHE SER ALA MET SEQRES 7 Q 123 ARG ASP THR ASN ASN LYS TYR VAL LEU THR LEU ASN LYS SEQRES 8 Q 123 PHE SER LYS GLU ASN GLU GLY TYR TYR PHE CYS SER VAL SEQRES 9 Q 123 ILE SER ASN SER VAL MET TYR PHE SER SER VAL VAL PRO SEQRES 10 Q 123 VAL LEU GLN LYS VAL ASN FORMUL 7 HOH *12(H2 O) HELIX 1 1 GLN L 79 ALA L 83 5 5 HELIX 2 2 SER L 121 SER L 127 1 7 HELIX 3 3 LYS L 183 GLU L 187 1 5 HELIX 4 4 LEU H 63 SER H 65 5 3 HELIX 5 5 THR H 73 LYS H 75 5 3 HELIX 6 6 GLN H 83 THR H 87 5 5 HELIX 7 7 SER H 163 ALA H 165 5 3 HELIX 8 8 PRO H 213 SER H 216 5 4 HELIX 9 9 GLN A 79 ALA A 83 5 5 HELIX 10 10 SER A 121 SER A 127 1 7 HELIX 11 11 LYS A 183 GLU A 187 1 5 HELIX 12 12 LEU B 63 SER B 65 5 3 HELIX 13 13 THR B 73 LYS B 75 5 3 HELIX 14 14 GLN B 83 THR B 87 5 5 HELIX 15 15 SER B 163 ALA B 165 5 3 HELIX 16 16 PRO B 213 SER B 216 5 4 SHEET 1 A 4 MET L 4 SER L 7 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 A 4 PHE L 62 PHE L 67 -1 N THR L 63 O ALA L 74 SHEET 1 B 6 SER L 10 SER L 14 0 SHEET 2 B 6 THR L 102 ILE L 107 1 O GLU L 105 N LEU L 11 SHEET 3 B 6 ALA L 84 ARG L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 B 6 ILE L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 B 6 LYS L 45 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 B 6 TYR L 53 ARG L 54 -1 O TYR L 53 N TYR L 49 SHEET 1 C 4 THR L 114 PHE L 118 0 SHEET 2 C 4 GLY L 129 PHE L 139 -1 O ASN L 137 N THR L 114 SHEET 3 C 4 TYR L 173 THR L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 C 4 VAL L 159 VAL L 163 -1 N LEU L 160 O THR L 178 SHEET 1 D 4 SER L 153 GLN L 155 0 SHEET 2 D 4 SER L 145 ILE L 150 -1 N TRP L 148 O GLN L 155 SHEET 3 D 4 LEU L 191 HIS L 198 -1 O GLU L 195 N LYS L 147 SHEET 4 D 4 SER L 201 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 E 4 GLN H 3 SER H 7 0 SHEET 2 E 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 E 4 GLN H 77 MET H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 E 4 LEU H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 F 6 LEU H 11 VAL H 12 0 SHEET 2 F 6 THR H 107 ALA H 111 1 O THR H 110 N VAL H 12 SHEET 3 F 6 ALA H 88 LEU H 95 -1 N TYR H 90 O THR H 107 SHEET 4 F 6 SER H 33 GLN H 39 -1 N VAL H 37 O PHE H 91 SHEET 5 F 6 GLU H 46 ILE H 51 -1 O GLY H 49 N TRP H 36 SHEET 6 F 6 THR H 57 TYR H 59 -1 O ASP H 58 N GLY H 50 SHEET 1 G 4 SER H 120 LEU H 124 0 SHEET 2 G 4 VAL H 138 TYR H 147 -1 O LYS H 145 N SER H 120 SHEET 3 G 4 LEU H 184 SER H 193 -1 O VAL H 191 N LEU H 140 SHEET 4 G 4 HIS H 172 THR H 173 -1 N HIS H 172 O SER H 190 SHEET 1 H 4 SER H 120 LEU H 124 0 SHEET 2 H 4 VAL H 138 TYR H 147 -1 O LYS H 145 N SER H 120 SHEET 3 H 4 LEU H 184 SER H 193 -1 O VAL H 191 N LEU H 140 SHEET 4 H 4 VAL H 177 GLN H 181 -1 N VAL H 177 O THR H 186 SHEET 1 I 3 THR H 153 TRP H 157 0 SHEET 2 I 3 THR H 204 HIS H 212 -1 O ASN H 206 N THR H 156 SHEET 3 I 3 THR H 217 LYS H 222 -1 O VAL H 219 N VAL H 210 SHEET 1 J 4 MET A 4 SER A 7 0 SHEET 2 J 4 VAL A 19 ALA A 25 -1 O LYS A 24 N THR A 5 SHEET 3 J 4 ASP A 70 ILE A 75 -1 O LEU A 73 N LEU A 21 SHEET 4 J 4 PHE A 62 PHE A 67 -1 N THR A 63 O ALA A 74 SHEET 1 K 6 SER A 10 SER A 14 0 SHEET 2 K 6 THR A 102 ILE A 107 1 O GLU A 105 N LEU A 11 SHEET 3 K 6 ALA A 84 ARG A 90 -1 N ALA A 84 O LEU A 104 SHEET 4 K 6 ILE A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 K 6 LYS A 45 TYR A 49 -1 O ILE A 48 N TRP A 35 SHEET 6 K 6 TYR A 53 ARG A 54 -1 O TYR A 53 N TYR A 49 SHEET 1 L 4 THR A 114 PHE A 118 0 SHEET 2 L 4 GLY A 129 PHE A 139 -1 O VAL A 133 N PHE A 118 SHEET 3 L 4 TYR A 173 THR A 182 -1 O MET A 175 N VAL A 136 SHEET 4 L 4 VAL A 159 VAL A 163 -1 N LEU A 160 O THR A 178 SHEET 1 M 4 SER A 153 GLN A 155 0 SHEET 2 M 4 SER A 145 ILE A 150 -1 N TRP A 148 O GLN A 155 SHEET 3 M 4 LEU A 191 HIS A 198 -1 O GLU A 195 N LYS A 147 SHEET 4 M 4 SER A 201 ASN A 210 -1 O VAL A 205 N VAL A 196 SHEET 1 N 4 GLN B 3 SER B 7 0 SHEET 2 N 4 LEU B 18 SER B 25 -1 O THR B 21 N SER B 7 SHEET 3 N 4 GLN B 77 MET B 82 -1 O VAL B 78 N CYS B 22 SHEET 4 N 4 LEU B 67 ASP B 72 -1 N SER B 68 O LYS B 81 SHEET 1 O 6 LEU B 11 VAL B 12 0 SHEET 2 O 6 THR B 107 ALA B 111 1 O THR B 110 N VAL B 12 SHEET 3 O 6 ALA B 88 LEU B 95 -1 N TYR B 90 O THR B 107 SHEET 4 O 6 SER B 33 GLN B 39 -1 N VAL B 37 O PHE B 91 SHEET 5 O 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 O 6 THR B 57 TYR B 59 -1 O ASP B 58 N GLY B 50 SHEET 1 P 4 SER B 120 LEU B 124 0 SHEET 2 P 4 VAL B 138 TYR B 147 -1 O LYS B 145 N SER B 120 SHEET 3 P 4 LEU B 184 SER B 193 -1 O VAL B 191 N LEU B 140 SHEET 4 P 4 HIS B 172 THR B 173 -1 N HIS B 172 O SER B 190 SHEET 1 Q 4 SER B 120 LEU B 124 0 SHEET 2 Q 4 VAL B 138 TYR B 147 -1 O LYS B 145 N SER B 120 SHEET 3 Q 4 LEU B 184 SER B 193 -1 O VAL B 191 N LEU B 140 SHEET 4 Q 4 VAL B 177 GLN B 181 -1 N VAL B 177 O THR B 186 SHEET 1 R 3 THR B 153 TRP B 157 0 SHEET 2 R 3 THR B 204 HIS B 212 -1 O ALA B 211 N THR B 153 SHEET 3 R 3 THR B 217 LYS B 222 -1 O VAL B 219 N VAL B 210 SHEET 1 S 4 LEU R 7 PHE R 10 0 SHEET 2 S 4 VAL R 22 VAL R 28 -1 O VAL R 25 N PHE R 10 SHEET 3 S 4 LYS R 84 LEU R 89 -1 O LEU R 87 N LEU R 24 SHEET 4 S 4 PHE R 75 ARG R 79 -1 N SER R 76 O THR R 88 SHEET 1 T 6 MET R 14 ALA R 16 0 SHEET 2 T 6 VAL R 116 GLN R 120 1 O PRO R 117 N MET R 14 SHEET 3 T 6 GLY R 98 SER R 106 -1 N GLY R 98 O VAL R 118 SHEET 4 T 6 CYS R 36 ASN R 42 -1 N SER R 37 O SER R 103 SHEET 5 T 6 THR R 51 MET R 56 -1 O THR R 51 N PHE R 40 SHEET 6 T 6 ILE R 63 TRP R 65 -1 O THR R 64 N TYR R 55 SHEET 1 U 4 MET R 14 ALA R 16 0 SHEET 2 U 4 VAL R 116 GLN R 120 1 O PRO R 117 N MET R 14 SHEET 3 U 4 GLY R 98 SER R 106 -1 N GLY R 98 O VAL R 118 SHEET 4 U 4 VAL R 109 PHE R 112 -1 O TYR R 111 N VAL R 104 SHEET 1 V 4 LEU Q 7 PHE Q 10 0 SHEET 2 V 4 VAL Q 22 VAL Q 28 -1 O VAL Q 25 N PHE Q 10 SHEET 3 V 4 LYS Q 84 LEU Q 89 -1 O LEU Q 87 N LEU Q 24 SHEET 4 V 4 PHE Q 75 ARG Q 79 -1 N SER Q 76 O THR Q 88 SHEET 1 W 6 MET Q 14 ALA Q 16 0 SHEET 2 W 6 VAL Q 116 GLN Q 120 1 O PRO Q 117 N MET Q 14 SHEET 3 W 6 GLY Q 98 SER Q 106 -1 N GLY Q 98 O VAL Q 118 SHEET 4 W 6 CYS Q 36 ASN Q 42 -1 N SER Q 37 O SER Q 103 SHEET 5 W 6 THR Q 51 MET Q 56 -1 O THR Q 51 N PHE Q 40 SHEET 6 W 6 ILE Q 63 TRP Q 65 -1 O THR Q 64 N TYR Q 55 SHEET 1 X 4 MET Q 14 ALA Q 16 0 SHEET 2 X 4 VAL Q 116 GLN Q 120 1 O PRO Q 117 N MET Q 14 SHEET 3 X 4 GLY Q 98 SER Q 106 -1 N GLY Q 98 O VAL Q 118 SHEET 4 X 4 VAL Q 109 PHE Q 112 -1 O TYR Q 111 N VAL Q 104 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.06 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.06 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 4 CYS H 142 CYS H 205 1555 1555 2.05 SSBOND 5 CYS A 23 CYS A 88 1555 1555 2.08 SSBOND 6 CYS A 134 CYS A 194 1555 1555 2.07 SSBOND 7 CYS B 22 CYS B 92 1555 1555 2.05 SSBOND 8 CYS B 142 CYS B 205 1555 1555 2.05 SSBOND 9 CYS R 26 CYS R 102 1555 1555 2.05 SSBOND 10 CYS Q 26 CYS Q 102 1555 1555 2.05 CISPEP 1 SER L 7 PRO L 8 0 -2.43 CISPEP 2 SER L 94 PRO L 95 0 -2.72 CISPEP 3 TYR L 140 PRO L 141 0 1.76 CISPEP 4 PHE H 148 PRO H 149 0 -8.90 CISPEP 5 GLU H 150 PRO H 151 0 -17.89 CISPEP 6 SER A 7 PRO A 8 0 -12.62 CISPEP 7 SER A 94 PRO A 95 0 -1.74 CISPEP 8 TYR A 140 PRO A 141 0 -0.24 CISPEP 9 PHE B 148 PRO B 149 0 -27.04 CISPEP 10 PHE R 10 PRO R 11 0 2.26 CISPEP 11 PHE Q 10 PRO Q 11 0 -2.67 CRYST1 83.344 107.135 131.522 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011998 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007603 0.00000