HEADER HYDROLASE 23-AUG-05 2AS9 TITLE FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF SPL PROTEASES FROM TITLE 2 STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-210; COMPND 5 SYNONYM: SPLC SERINE PROTEASE; COMPND 6 EC: 3.4.21.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS SERINE PROTEASE, TRYPSIN-LIKE FOLD, STAPHYLOCOCCUS AUREUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.M.POPOWICZ,G.DUBIN,J.STEC-NIEMCZYK,A.CZARNY,A.DUBIN,J.POTEMPA, AUTHOR 2 T.A.HOLAK REVDAT 5 13-MAR-24 2AS9 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 2AS9 1 REMARK REVDAT 3 24-FEB-09 2AS9 1 VERSN REVDAT 2 11-APR-06 2AS9 1 JRNL REVDAT 1 06-SEP-05 2AS9 0 JRNL AUTH G.M.POPOWICZ,G.DUBIN,J.STEC-NIEMCZYK,A.CZARNY,A.DUBIN, JRNL AUTH 2 J.POTEMPA,T.A.HOLAK JRNL TITL FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF SPL PROTEASES JRNL TITL 2 FROM STAPHYLOCOCCUS AUREUS JRNL REF J.MOL.BIOL. V. 358 270 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16516230 JRNL DOI 10.1016/J.JMB.2006.01.098 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2647 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3564 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3041 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.03000 REMARK 3 B22 (A**2) : -1.09000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.167 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3109 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4224 ; 1.210 ; 1.922 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 6.003 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;38.902 ;25.974 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;12.337 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 7.905 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 459 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2452 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1520 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2177 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 197 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 9 ; 0.075 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.179 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.159 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.015 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2024 ; 0.663 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3196 ; 1.122 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1207 ; 1.749 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1028 ; 2.649 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2AS9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR, MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE DIP100S REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51998 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 64.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, ZN-ACETATE, NA-CACODYLATE, REMARK 280 PH 7.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.56000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.69500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.69500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.56000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLN B 127 REMARK 465 ASN B 128 REMARK 465 GLY B 176 REMARK 465 ILE B 177 REMARK 465 GLY B 178 REMARK 465 LYS B 179 REMARK 465 ILE B 180 REMARK 465 GLY B 181 REMARK 465 SER B 182 REMARK 465 GLU B 183 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CB CG SD CE REMARK 470 LYS A 9 CD CE NZ REMARK 470 LYS A 43 CD CE NZ REMARK 470 LYS A 46 CD CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LYS A 68 CD CE NZ REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 LYS A 94 NZ REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 LYS A 116 CE NZ REMARK 470 LYS A 118 CD CE NZ REMARK 470 LYS A 143 CD CE NZ REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 470 LYS B 3 CE NZ REMARK 470 ASN B 4 CG OD1 ND2 REMARK 470 LYS B 9 CG CD CE NZ REMARK 470 LYS B 23 CD CE NZ REMARK 470 LYS B 32 CD CE NZ REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 LYS B 46 CD CE NZ REMARK 470 ARG B 50 CD NE CZ NH1 NH2 REMARK 470 LYS B 66 CD CE NZ REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 GLU B 100 CD OE1 OE2 REMARK 470 LYS B 109 CG CD CE NZ REMARK 470 LYS B 112 CD CE NZ REMARK 470 LYS B 116 CD CE NZ REMARK 470 LYS B 118 CD CE NZ REMARK 470 LYS B 131 NZ REMARK 470 ARG B 141 NE CZ NH1 NH2 REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 ASP B 144 CB CG OD1 OD2 REMARK 470 GLY B 175 O REMARK 470 GLN B 193 CG CD OE1 NE2 REMARK 470 GLN B 199 CG CD OE1 NE2 REMARK 470 LYS B 200 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 676 O HOH A 911 2.02 REMARK 500 O PRO A 125 O ASN A 128 2.11 REMARK 500 NE2 HIS A 201 O HOH A 876 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 130 O - C - N ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 54 53.43 38.40 REMARK 500 ASN A 56 66.47 -119.70 REMARK 500 ASP A 110 -177.51 -170.85 REMARK 500 ASP A 114 -3.92 73.89 REMARK 500 SER A 129 76.84 -38.94 REMARK 500 PHE A 130 41.45 35.15 REMARK 500 ASP A 144 -111.09 53.35 REMARK 500 GLN A 204 -17.09 -142.02 REMARK 500 ASP B 24 25.96 -147.95 REMARK 500 THR B 37 -159.09 -148.93 REMARK 500 HIS B 54 54.15 37.18 REMARK 500 ASP B 110 -169.68 -171.77 REMARK 500 ASP B 114 -4.73 84.06 REMARK 500 TYR B 122 78.33 -119.61 REMARK 500 ASP B 144 -110.73 60.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 128 13.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 666 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 32 NZ REMARK 620 2 GLU A 86 OE1 111.5 REMARK 620 3 HIS A 206 NE2 108.6 118.6 REMARK 620 4 HOH A 676 O 85.8 84.8 142.7 REMARK 620 5 HOH A 911 O 124.8 93.8 99.4 47.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 888 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD1 REMARK 620 2 HOH A 915 O 90.1 REMARK 620 3 HOH A 928 O 101.8 126.9 REMARK 620 4 HOH A 929 O 114.9 109.1 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 555 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 99 ND2 REMARK 620 2 HOH A 746 O 70.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 444 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 100 OE2 REMARK 620 2 GLU A 100 OE1 53.2 REMARK 620 3 GLU B 86 OE1 78.4 124.7 REMARK 620 4 HIS B 206 NE2 144.3 97.0 112.9 REMARK 620 5 HOH B 749 O 96.2 102.8 107.7 110.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 333 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD1 REMARK 620 2 ASP A 110 OD2 57.0 REMARK 620 3 HIS A 205 NE2 97.2 114.9 REMARK 620 4 HIS A 207 NE2 141.7 86.9 110.8 REMARK 620 5 HOH A 783 O 79.5 119.0 110.8 112.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 222 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 114 OD1 REMARK 620 2 ASP A 114 OD2 52.5 REMARK 620 3 HIS B 201 ND1 91.1 109.9 REMARK 620 4 HIS B 205 NE2 144.2 96.8 119.4 REMARK 620 5 HOH B 667 O 85.3 123.7 105.7 102.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1777 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 898 O REMARK 620 2 HIS B 207 NE2 85.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 666 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 888 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 444 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 555 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1777 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QY6 RELATED DB: PDB REMARK 900 PROTEASE WITH SIMILAR FOLD, FROM THE SAME SPECIES REMARK 900 RELATED ID: 1AGJ RELATED DB: PDB REMARK 900 PROTEASE WITH SIMILAR FOLD, FROM THE SAME SPECIES DBREF 2AS9 A 2 204 UNP Q53782 Q53782_STAAU 37 239 DBREF 2AS9 B 2 204 UNP Q53782 Q53782_STAAU 37 239 SEQADV 2AS9 MET A 1 UNP Q53782 INITIATING METHIONINE SEQADV 2AS9 HIS A 205 UNP Q53782 EXPRESSION TAG SEQADV 2AS9 HIS A 206 UNP Q53782 EXPRESSION TAG SEQADV 2AS9 HIS A 207 UNP Q53782 EXPRESSION TAG SEQADV 2AS9 HIS A 208 UNP Q53782 EXPRESSION TAG SEQADV 2AS9 HIS A 209 UNP Q53782 EXPRESSION TAG SEQADV 2AS9 HIS A 210 UNP Q53782 EXPRESSION TAG SEQADV 2AS9 MET B 1 UNP Q53782 INITIATING METHIONINE SEQADV 2AS9 HIS B 205 UNP Q53782 EXPRESSION TAG SEQADV 2AS9 HIS B 206 UNP Q53782 EXPRESSION TAG SEQADV 2AS9 HIS B 207 UNP Q53782 EXPRESSION TAG SEQADV 2AS9 HIS B 208 UNP Q53782 EXPRESSION TAG SEQADV 2AS9 HIS B 209 UNP Q53782 EXPRESSION TAG SEQADV 2AS9 HIS B 210 UNP Q53782 EXPRESSION TAG SEQRES 1 A 210 MET GLU LYS ASN VAL THR GLN VAL LYS ASP THR ASN ASN SEQRES 2 A 210 PHE PRO TYR ASN GLY VAL VAL SER PHE LYS ASP ALA THR SEQRES 3 A 210 GLY PHE VAL ILE GLY LYS ASN THR ILE ILE THR ASN LYS SEQRES 4 A 210 HIS VAL SER LYS ASP TYR LYS VAL GLY ASP ARG ILE THR SEQRES 5 A 210 ALA HIS PRO ASN GLY ASP LYS GLY ASN GLY GLY ILE TYR SEQRES 6 A 210 LYS ILE LYS SER ILE SER ASP TYR PRO GLY ASP GLU ASP SEQRES 7 A 210 ILE SER VAL MET ASN ILE GLU GLU GLN ALA VAL GLU ARG SEQRES 8 A 210 GLY PRO LYS GLY PHE ASN PHE ASN GLU ASN VAL GLN ALA SEQRES 9 A 210 PHE ASN PHE ALA LYS ASP ALA LYS VAL ASP ASP LYS ILE SEQRES 10 A 210 LYS VAL ILE GLY TYR PRO LEU PRO ALA GLN ASN SER PHE SEQRES 11 A 210 LYS GLN PHE GLU SER THR GLY THR ILE LYS ARG ILE LYS SEQRES 12 A 210 ASP ASN ILE LEU ASN PHE ASP ALA TYR ILE GLU PRO GLY SEQRES 13 A 210 ASN SER GLY SER PRO VAL LEU ASN SER ASN ASN GLU VAL SEQRES 14 A 210 ILE GLY VAL VAL TYR GLY GLY ILE GLY LYS ILE GLY SER SEQRES 15 A 210 GLU TYR ASN GLY ALA VAL TYR PHE THR PRO GLN ILE LYS SEQRES 16 A 210 ASP PHE ILE GLN LYS HIS ILE GLU GLN HIS HIS HIS HIS SEQRES 17 A 210 HIS HIS SEQRES 1 B 210 MET GLU LYS ASN VAL THR GLN VAL LYS ASP THR ASN ASN SEQRES 2 B 210 PHE PRO TYR ASN GLY VAL VAL SER PHE LYS ASP ALA THR SEQRES 3 B 210 GLY PHE VAL ILE GLY LYS ASN THR ILE ILE THR ASN LYS SEQRES 4 B 210 HIS VAL SER LYS ASP TYR LYS VAL GLY ASP ARG ILE THR SEQRES 5 B 210 ALA HIS PRO ASN GLY ASP LYS GLY ASN GLY GLY ILE TYR SEQRES 6 B 210 LYS ILE LYS SER ILE SER ASP TYR PRO GLY ASP GLU ASP SEQRES 7 B 210 ILE SER VAL MET ASN ILE GLU GLU GLN ALA VAL GLU ARG SEQRES 8 B 210 GLY PRO LYS GLY PHE ASN PHE ASN GLU ASN VAL GLN ALA SEQRES 9 B 210 PHE ASN PHE ALA LYS ASP ALA LYS VAL ASP ASP LYS ILE SEQRES 10 B 210 LYS VAL ILE GLY TYR PRO LEU PRO ALA GLN ASN SER PHE SEQRES 11 B 210 LYS GLN PHE GLU SER THR GLY THR ILE LYS ARG ILE LYS SEQRES 12 B 210 ASP ASN ILE LEU ASN PHE ASP ALA TYR ILE GLU PRO GLY SEQRES 13 B 210 ASN SER GLY SER PRO VAL LEU ASN SER ASN ASN GLU VAL SEQRES 14 B 210 ILE GLY VAL VAL TYR GLY GLY ILE GLY LYS ILE GLY SER SEQRES 15 B 210 GLU TYR ASN GLY ALA VAL TYR PHE THR PRO GLN ILE LYS SEQRES 16 B 210 ASP PHE ILE GLN LYS HIS ILE GLU GLN HIS HIS HIS HIS SEQRES 17 B 210 HIS HIS HET ZN A 333 1 HET ZN A 666 1 HET ZN A 888 1 HET ZN A1777 1 HET ZN B 222 1 HET ZN B 444 1 HET ZN B 555 1 HETNAM ZN ZINC ION FORMUL 3 ZN 7(ZN 2+) FORMUL 10 HOH *222(H2 O) HELIX 1 1 PRO A 15 ASN A 17 5 3 HELIX 2 2 ASN A 38 TYR A 45 1 8 HELIX 3 3 ASN A 56 GLY A 60 5 5 HELIX 4 4 ASN A 99 ASN A 101 5 3 HELIX 5 5 THR A 191 LYS A 200 1 10 HELIX 6 6 PRO B 15 ASN B 17 5 3 HELIX 7 7 ASN B 38 LYS B 43 1 6 HELIX 8 8 ASN B 56 GLY B 60 5 5 HELIX 9 9 PHE B 98 VAL B 102 1 5 HELIX 10 10 GLU B 154 SER B 158 5 5 HELIX 11 11 THR B 191 HIS B 206 1 16 SHEET 1 A 8 VAL A 5 GLN A 7 0 SHEET 2 A 8 PHE A 133 LYS A 143 -1 O GLU A 134 N THR A 6 SHEET 3 A 8 ILE A 146 ASP A 150 -1 O ASN A 148 N LYS A 140 SHEET 4 A 8 ASN A 185 TYR A 189 -1 O ASN A 185 N PHE A 149 SHEET 5 A 8 VAL A 169 VAL A 173 -1 N VAL A 172 O VAL A 188 SHEET 6 A 8 PRO A 161 LEU A 163 -1 N VAL A 162 O ILE A 170 SHEET 7 A 8 LYS A 116 GLY A 121 -1 N LYS A 118 O LEU A 163 SHEET 8 A 8 PHE A 133 LYS A 143 -1 O GLY A 137 N ILE A 117 SHEET 1 B 7 VAL A 19 SER A 21 0 SHEET 2 B 7 THR A 26 GLY A 31 -1 O GLY A 27 N VAL A 20 SHEET 3 B 7 THR A 34 THR A 37 -1 O ILE A 36 N PHE A 28 SHEET 4 B 7 SER A 80 ILE A 84 -1 O MET A 82 N ILE A 35 SHEET 5 B 7 ILE A 64 ASP A 72 -1 N SER A 71 O VAL A 81 SHEET 6 B 7 ARG A 50 ALA A 53 -1 N ILE A 51 O TYR A 65 SHEET 7 B 7 VAL A 19 SER A 21 -1 N SER A 21 O THR A 52 SHEET 1 C 2 GLN A 87 GLY A 92 0 SHEET 2 C 2 GLY A 95 ASN A 97 -1 O PHE A 96 N ALA A 88 SHEET 1 D 8 VAL B 5 GLN B 7 0 SHEET 2 D 8 PHE B 133 LYS B 143 -1 O GLU B 134 N THR B 6 SHEET 3 D 8 ILE B 146 PHE B 149 -1 O ASN B 148 N LYS B 140 SHEET 4 D 8 ASN B 185 TYR B 189 -1 O ALA B 187 N LEU B 147 SHEET 5 D 8 VAL B 169 VAL B 173 -1 N VAL B 172 O VAL B 188 SHEET 6 D 8 PRO B 161 LEU B 163 -1 N VAL B 162 O ILE B 170 SHEET 7 D 8 LYS B 116 GLY B 121 -1 N LYS B 118 O LEU B 163 SHEET 8 D 8 PHE B 133 LYS B 143 -1 O SER B 135 N VAL B 119 SHEET 1 E 7 VAL B 19 SER B 21 0 SHEET 2 E 7 THR B 26 GLY B 31 -1 O GLY B 27 N VAL B 20 SHEET 3 E 7 THR B 34 THR B 37 -1 O ILE B 36 N PHE B 28 SHEET 4 E 7 SER B 80 ILE B 84 -1 O MET B 82 N ILE B 35 SHEET 5 E 7 ILE B 64 ASP B 72 -1 N LYS B 68 O ASN B 83 SHEET 6 E 7 ARG B 50 ALA B 53 -1 N ILE B 51 O TYR B 65 SHEET 7 E 7 VAL B 19 SER B 21 -1 N SER B 21 O THR B 52 SHEET 1 F 2 GLN B 87 GLY B 92 0 SHEET 2 F 2 GLY B 95 ASN B 97 -1 O PHE B 96 N ALA B 88 LINK NZ LYS A 32 ZN ZN A 666 1555 1555 2.06 LINK OD1 ASP A 44 ZN ZN A 888 1555 1555 2.09 LINK OE1 GLU A 86 ZN ZN A 666 1555 1555 2.04 LINK ND2 ASN A 99 ZN ZN B 555 4556 1555 2.64 LINK OE2 GLU A 100 ZN ZN B 444 4556 1555 2.65 LINK OE1 GLU A 100 ZN ZN B 444 4556 1555 2.15 LINK OD1 ASP A 110 ZN ZN A 333 4456 1555 2.34 LINK OD2 ASP A 110 ZN ZN A 333 4456 1555 2.22 LINK OD1 ASP A 114 ZN ZN B 222 1555 1555 2.75 LINK OD2 ASP A 114 ZN ZN B 222 1555 1555 2.01 LINK NE2 HIS A 205 ZN ZN A 333 1555 1555 2.10 LINK NE2 HIS A 206 ZN ZN A 666 1555 1555 2.04 LINK NE2 HIS A 207 ZN ZN A 333 1555 1555 1.99 LINK ZN ZN A 333 O HOH A 783 1555 4456 2.25 LINK ZN ZN A 666 O HOH A 676 1555 1555 2.72 LINK ZN ZN A 666 O HOH A 911 1555 1555 2.16 LINK O HOH A 746 ZN ZN B 555 4556 1555 2.01 LINK ZN ZN A 888 O HOH A 915 1555 1555 2.43 LINK ZN ZN A 888 O HOH A 928 1555 1555 2.00 LINK ZN ZN A 888 O HOH A 929 1555 1555 2.20 LINK O HOH A 898 ZN ZN A1777 1555 1555 2.20 LINK ZN ZN A1777 NE2 HIS B 207 1555 4456 2.16 LINK OE1 GLU B 86 ZN ZN B 444 1555 1555 1.83 LINK ND1 HIS B 201 ZN ZN B 222 1555 1555 2.04 LINK NE2 HIS B 205 ZN ZN B 222 1555 1555 2.00 LINK NE2 HIS B 206 ZN ZN B 444 1555 1555 2.02 LINK ZN ZN B 222 O HOH B 667 1555 1555 2.36 LINK ZN ZN B 444 O HOH B 749 1555 1555 2.44 CISPEP 1 PHE A 14 PRO A 15 0 3.36 CISPEP 2 PHE B 14 PRO B 15 0 5.99 SITE 1 AC1 4 ASP A 114 HIS B 201 HIS B 205 HOH B 667 SITE 1 AC2 4 ASP A 110 HIS A 205 HIS A 207 HOH A 783 SITE 1 AC3 5 LYS A 32 GLU A 86 HIS A 206 HOH A 676 SITE 2 AC3 5 HOH A 911 SITE 1 AC4 4 ASP A 44 HOH A 915 HOH A 928 HOH A 929 SITE 1 AC5 4 GLU A 100 GLU B 86 HIS B 206 HOH B 749 SITE 1 AC6 4 LYS A 32 ASN A 99 HOH A 726 HOH A 746 SITE 1 AC7 2 HOH A 898 HIS B 207 CRYST1 53.120 81.400 107.390 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018825 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009312 0.00000