HEADER TRANSFERASE/DNA 23-AUG-05 2ASD TITLE OXOG-MODIFIED INSERTION TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'; COMPND 3 CHAIN: D, H; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: PRIMER STRAND (DIDEOXY-TERMINATED AT 3'-END); COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*CP*T*AP*AP*CP*(8OG) COMPND 8 P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'; COMPND 9 CHAIN: E, J; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: OXOG-MODIFIED TEMPLATE STRAND; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA POLYMERASE IV; COMPND 14 CHAIN: A, B; COMPND 15 SYNONYM: POL IV, DPO4; COMPND 16 EC: 2.7.7.7; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 7 ORGANISM_TAXID: 2287; SOURCE 8 GENE: DBH, DPO4; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL (STRATAGENE); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS DNA POLYMERASE, 8-OXOGUANINE, Y-FAMILY, LESION BYPASS, TRANSFERASE- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.RECHKOBLIT,L.MALININA,Y.CHENG,V.KURYAVYI,S.BROYDE,N.E.GEACINTOV, AUTHOR 2 D.J.PATEL REVDAT 5 23-AUG-23 2ASD 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2ASD 1 VERSN REVDAT 3 24-FEB-09 2ASD 1 VERSN REVDAT 2 17-JAN-06 2ASD 1 JRNL REVDAT 1 10-JAN-06 2ASD 0 JRNL AUTH O.RECHKOBLIT,L.MALININA,Y.CHENG,V.KURYAVYI,S.BROYDE, JRNL AUTH 2 N.E.GEACINTOV,D.J.PATEL JRNL TITL STEPWISE TRANSLOCATION OF DPO4 POLYMERASE DURING ERROR-FREE JRNL TITL 2 BYPASS OF AN OXOG LESION JRNL REF PLOS BIOL. V. 4 1 2006 JRNL REFN ISSN 1544-9173 JRNL PMID 16379496 JRNL DOI 10.1371/JOURNAL.PBIO.0040011 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 86555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4508 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6317 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 318 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5478 REMARK 3 NUCLEIC ACID ATOMS : 1259 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 501 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 1.38000 REMARK 3 B33 (A**2) : -1.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.288 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7044 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5985 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9724 ; 1.316 ; 2.221 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14042 ; 0.826 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 6.040 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1052 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6675 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1123 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1274 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 7140 ; 0.211 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3884 ; 0.078 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 387 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 17 ; 0.103 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.235 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 80 ; 0.316 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.111 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3413 ; 0.404 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5516 ; 0.762 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3631 ; 1.061 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4208 ; 1.741 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 7 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 341 REMARK 3 RESIDUE RANGE : D 801 D 813 REMARK 3 RESIDUE RANGE : E 903 E 919 REMARK 3 RESIDUE RANGE : A 414 A 414 REMARK 3 RESIDUE RANGE : A 415 A 416 REMARK 3 RESIDUE RANGE : A 417 A 417 REMARK 3 RESIDUE RANGE : D 418 D 418 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7630 0.3070 8.9300 REMARK 3 T TENSOR REMARK 3 T11: 0.0917 T22: 0.0823 REMARK 3 T33: 0.0669 T12: 0.0171 REMARK 3 T13: 0.0141 T23: 0.0621 REMARK 3 L TENSOR REMARK 3 L11: 1.7935 L22: 0.5799 REMARK 3 L33: 0.9545 L12: 0.2039 REMARK 3 L13: 0.0070 L23: -0.0493 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: -0.2254 S13: -0.1465 REMARK 3 S21: -0.0237 S22: -0.1256 S23: -0.0254 REMARK 3 S31: 0.0201 S32: 0.0899 S33: 0.0782 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 7 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1341 REMARK 3 RESIDUE RANGE : H 1801 H 1813 REMARK 3 RESIDUE RANGE : J 1901 J 1919 REMARK 3 RESIDUE RANGE : B 1414 B 1414 REMARK 3 RESIDUE RANGE : B 1415 B 1415 REMARK 3 RESIDUE RANGE : B 1416 B 1416 REMARK 3 RESIDUE RANGE : B 1417 B 1417 REMARK 3 ORIGIN FOR THE GROUP (A): 37.7910 0.0720 50.1380 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.1139 REMARK 3 T33: 0.0537 T12: 0.0322 REMARK 3 T13: -0.0081 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.6454 L22: 0.8763 REMARK 3 L33: 2.5000 L12: -0.0019 REMARK 3 L13: 0.0386 L23: 0.0550 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: 0.1808 S13: -0.2613 REMARK 3 S21: -0.1578 S22: -0.0430 S23: 0.0614 REMARK 3 S31: 0.4986 S32: 0.0111 S33: -0.0068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ASD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98435 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.67100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1JX4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, HEPES-SODIUM, CALCIUM REMARK 280 ACETATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.55450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, J, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC E 901 REMARK 465 DT E 902 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 GLU A 342 REMARK 465 ALA A 343 REMARK 465 ILE A 344 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 PHE A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 GLY B -7 REMARK 465 SER B -6 REMARK 465 HIS B -5 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 GLY B 0 REMARK 465 GLU B 1342 REMARK 465 ALA B 1343 REMARK 465 ILE B 1344 REMARK 465 GLY B 1345 REMARK 465 LEU B 1346 REMARK 465 ASP B 1347 REMARK 465 LYS B 1348 REMARK 465 PHE B 1349 REMARK 465 PHE B 1350 REMARK 465 ASP B 1351 REMARK 465 THR B 1352 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA E 903 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DG D 810 O HOH D 713 1.80 REMARK 500 O ASP B 1277 O HOH B 1778 2.15 REMARK 500 OP2 DT H 1808 O HOH H 1789 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC J1919 C4 DC J1919 C5 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA D 807 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA D 812 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA E 909 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT H1808 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA H1812 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC J1901 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 8OG J1906 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DC J1907 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT J1908 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA J1909 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC J1918 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 ASP A 117 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 277 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 59.65 18.83 REMARK 500 ARG A 77 70.97 -115.15 REMARK 500 SER A 145 -167.48 -162.61 REMARK 500 LYS A 159 179.41 -53.34 REMARK 500 PRO A 160 107.35 19.40 REMARK 500 ASN A 234 41.16 -152.48 REMARK 500 ASP A 277 80.19 41.95 REMARK 500 LYS A 278 -24.20 79.00 REMARK 500 TYR B1010 55.93 22.63 REMARK 500 LEU B1068 66.46 -150.55 REMARK 500 ARG B1077 72.82 -116.17 REMARK 500 ASP B1105 24.18 -141.44 REMARK 500 LYS B1159 175.88 -50.32 REMARK 500 PRO B1160 116.01 15.38 REMARK 500 ASP B1231 42.62 70.32 REMARK 500 ASN B1234 51.38 -162.59 REMARK 500 ASP B1277 81.13 36.62 REMARK 500 LYS B1278 -37.19 91.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 159 PRO A 160 -116.89 REMARK 500 LYS B 1159 PRO B 1160 -113.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH D 693 REMARK 615 HOH A 685 REMARK 615 HOH A 686 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 418 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 692 O REMARK 620 2 HOH D 693 O 63.1 REMARK 620 3 HOH D 694 O 86.5 59.2 REMARK 620 4 HOH D 695 O 146.9 83.9 76.7 REMARK 620 5 HOH D 696 O 142.2 145.8 94.0 68.4 REMARK 620 6 HOH E 691 O 99.1 103.7 157.3 87.1 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 688 O REMARK 620 2 ALA A 181 O 166.8 REMARK 620 3 ILE A 186 O 94.5 82.9 REMARK 620 4 HOH A 685 O 161.4 5.5 80.7 REMARK 620 5 HOH A 686 O 101.5 72.5 17.9 69.1 REMARK 620 6 HOH A 687 O 101.5 90.2 72.8 94.4 87.7 REMARK 620 7 HOH A 689 O 80.7 93.7 144.1 92.5 128.3 143.2 REMARK 620 8 HOH A 690 O 85.4 81.5 71.8 76.0 56.6 144.3 72.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DDG D 813 OP1 REMARK 620 2 ASP A 7 OD2 156.5 REMARK 620 3 GLU A 106 OE2 84.7 103.1 REMARK 620 4 HOH A 519 O 112.0 90.2 91.5 REMARK 620 5 HOH A 520 O 87.4 86.8 169.5 85.1 REMARK 620 6 HOH A 521 O 81.7 74.9 105.2 159.6 80.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH H1511 O REMARK 620 2 HOH H1512 O 87.3 REMARK 620 3 ALA B1181 O 78.6 164.9 REMARK 620 4 ILE B1186 O 66.7 88.6 81.1 REMARK 620 5 HOH B1508 O 153.3 80.7 114.3 136.0 REMARK 620 6 HOH B1509 O 136.2 95.9 90.8 69.7 69.2 REMARK 620 7 HOH B1510 O 79.7 93.3 89.3 146.2 77.3 143.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DDG H1813 OP1 REMARK 620 2 ASP B1007 OD1 156.2 REMARK 620 3 GLU B1106 OE2 79.7 101.5 REMARK 620 4 HOH B1503 O 112.7 91.1 87.0 REMARK 620 5 HOH B1504 O 83.5 72.9 101.7 163.0 REMARK 620 6 HOH B1505 O 88.9 93.9 163.2 86.0 89.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 88.3 REMARK 620 3 ASP A 105 OD2 91.3 91.7 REMARK 620 4 DCP A 414 O2A 104.3 167.3 86.1 REMARK 620 5 DCP A 414 O1B 173.0 91.5 95.6 76.3 REMARK 620 6 DCP A 414 O1G 96.6 98.5 167.2 82.3 76.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD2 REMARK 620 2 PHE B1008 O 89.9 REMARK 620 3 ASP B1105 OD2 92.2 88.2 REMARK 620 4 DCP B1414 O2A 103.5 165.9 86.9 REMARK 620 5 DCP B1414 O1B 175.9 88.6 91.6 78.3 REMARK 620 6 DCP B1414 O1G 97.1 102.7 165.6 80.3 79.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP B 1414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ASJ RELATED DB: PDB REMARK 900 RELATED ID: 2ASL RELATED DB: PDB REMARK 900 RELATED ID: 2ATL RELATED DB: PDB REMARK 900 RELATED ID: 2AU0 RELATED DB: PDB DBREF 2ASD A 2 352 UNP Q97W02 DPO42_SULSO 2 352 DBREF 2ASD B 1002 1352 UNP Q97W02 DPO42_SULSO 2 352 DBREF 2ASD D 801 813 PDB 2ASD 2ASD 801 813 DBREF 2ASD E 901 919 PDB 2ASD 2ASD 901 919 DBREF 2ASD H 1801 1813 PDB 2ASD 2ASD 1801 1813 DBREF 2ASD J 1901 1919 PDB 2ASD 2ASD 1901 1919 SEQADV 2ASD GLY A -7 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD SER A -6 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD HIS A -5 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD MET A -4 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD GLY A -3 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD GLY A -2 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD GLY A -1 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD GLY A 0 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD GLY A 1 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD GLY B -7 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD SER B -6 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD HIS B -5 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD MET B -4 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD GLY B -3 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD GLY B -2 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD GLY B -1 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD GLY B 0 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASD GLY B 1001 UNP Q97W02 CLONING ARTIFACT SEQRES 1 D 13 DG DG DT DT DG DG DA DT DG DG DT DA DDG SEQRES 1 E 19 DC DT DA DA DC 8OG DC DT DA DC DC DA DT SEQRES 2 E 19 DC DC DA DA DC DC SEQRES 1 H 13 DG DG DT DT DG DG DA DT DG DG DT DA DDG SEQRES 1 J 19 DC DT DA DA DC 8OG DC DT DA DC DC DA DT SEQRES 2 J 19 DC DC DA DA DC DC SEQRES 1 A 360 GLY SER HIS MET GLY GLY GLY GLY GLY ILE VAL LEU PHE SEQRES 2 A 360 VAL ASP PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL SEQRES 3 A 360 LEU ASN PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS SEQRES 4 A 360 VAL PHE SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA SEQRES 5 A 360 THR ALA ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA SEQRES 6 A 360 GLY ILE PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN SEQRES 7 A 360 ALA VAL TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN SEQRES 8 A 360 VAL SER SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER SEQRES 9 A 360 GLU LYS ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU SEQRES 10 A 360 ASP ILE SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR SEQRES 11 A 360 ASN LEU GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS SEQRES 12 A 360 GLU LYS ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS SEQRES 13 A 360 VAL PHE ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN SEQRES 14 A 360 GLY ILE LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU SEQRES 15 A 360 ILE ARG GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY SEQRES 16 A 360 ASN ILE THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN SEQRES 17 A 360 LYS LEU VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU SEQRES 18 A 360 LYS GLY MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SEQRES 19 A 360 SER LEU ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR SEQRES 20 A 360 ARG VAL ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS SEQRES 21 A 360 ARG ASN SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU SEQRES 22 A 360 PHE ARG ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS SEQRES 23 A 360 ARG ILE PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU SEQRES 24 A 360 ASP LEU ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS SEQRES 25 A 360 GLY ILE SER LYS GLU THR ALA TYR SER GLU SER VAL LYS SEQRES 26 A 360 LEU LEU GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE SEQRES 27 A 360 ARG ARG ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA SEQRES 28 A 360 ILE GLY LEU ASP LYS PHE PHE ASP THR SEQRES 1 B 360 GLY SER HIS MET GLY GLY GLY GLY GLY ILE VAL LEU PHE SEQRES 2 B 360 VAL ASP PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL SEQRES 3 B 360 LEU ASN PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS SEQRES 4 B 360 VAL PHE SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA SEQRES 5 B 360 THR ALA ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA SEQRES 6 B 360 GLY ILE PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN SEQRES 7 B 360 ALA VAL TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN SEQRES 8 B 360 VAL SER SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER SEQRES 9 B 360 GLU LYS ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU SEQRES 10 B 360 ASP ILE SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR SEQRES 11 B 360 ASN LEU GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS SEQRES 12 B 360 GLU LYS ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS SEQRES 13 B 360 VAL PHE ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN SEQRES 14 B 360 GLY ILE LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU SEQRES 15 B 360 ILE ARG GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY SEQRES 16 B 360 ASN ILE THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN SEQRES 17 B 360 LYS LEU VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU SEQRES 18 B 360 LYS GLY MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SEQRES 19 B 360 SER LEU ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR SEQRES 20 B 360 ARG VAL ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS SEQRES 21 B 360 ARG ASN SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU SEQRES 22 B 360 PHE ARG ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS SEQRES 23 B 360 ARG ILE PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU SEQRES 24 B 360 ASP LEU ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS SEQRES 25 B 360 GLY ILE SER LYS GLU THR ALA TYR SER GLU SER VAL LYS SEQRES 26 B 360 LEU LEU GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE SEQRES 27 B 360 ARG ARG ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA SEQRES 28 B 360 ILE GLY LEU ASP LYS PHE PHE ASP THR MODRES 2ASD DDG D 813 DG MODRES 2ASD 8OG E 906 DG MODRES 2ASD DDG H 1813 DG MODRES 2ASD 8OG J 1906 DG HET DDG D 813 21 HET 8OG E 906 23 HET DDG H1813 21 HET 8OG J1906 23 HET CA D 418 1 HET CA A 415 1 HET CA A 416 1 HET CA A 417 1 HET DCP A 414 28 HET CA B1415 1 HET CA B1416 1 HET CA B1417 1 HET DCP B1414 28 HETNAM DDG 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE FORMUL 1 DDG 2(C10 H14 N5 O6 P) FORMUL 2 8OG 2(C10 H14 N5 O8 P) FORMUL 7 CA 7(CA 2+) FORMUL 11 DCP 2(C9 H16 N3 O13 P3) FORMUL 16 HOH *501(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 LYS A 52 1 6 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 ARG A 93 1 17 HELIX 6 6 ASP A 117 LYS A 137 1 21 HELIX 7 7 ASN A 147 LYS A 159 1 13 HELIX 8 8 ASP A 167 LEU A 178 1 12 HELIX 9 9 ASP A 179 VAL A 183 5 5 HELIX 10 10 GLY A 187 LEU A 197 1 11 HELIX 11 11 LYS A 201 SER A 207 5 7 HELIX 12 12 GLU A 209 GLY A 218 1 10 HELIX 13 13 GLY A 218 ARG A 230 1 13 HELIX 14 14 ASN A 257 ASP A 277 1 21 HELIX 15 15 SER A 307 ASP A 326 1 20 HELIX 16 16 TYR B 1010 ASN B 1020 1 11 HELIX 17 17 PRO B 1021 LYS B 1024 5 4 HELIX 18 18 ASN B 1047 LYS B 1052 1 6 HELIX 19 19 PRO B 1060 LEU B 1068 1 9 HELIX 20 20 ARG B 1077 GLU B 1094 1 18 HELIX 21 21 ASP B 1117 LYS B 1137 1 21 HELIX 22 22 ASN B 1147 LYS B 1159 1 13 HELIX 23 23 ASP B 1167 LEU B 1178 1 12 HELIX 24 24 ASP B 1179 VAL B 1183 5 5 HELIX 25 25 GLY B 1187 GLY B 1198 1 12 HELIX 26 26 VAL B 1203 ILE B 1208 1 6 HELIX 27 27 GLU B 1209 GLY B 1218 1 10 HELIX 28 28 GLY B 1218 ARG B 1230 1 13 HELIX 29 29 ASN B 1257 ASP B 1277 1 21 HELIX 30 30 SER B 1307 ASP B 1326 1 20 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 32 O ALA A 42 SHEET 3 B 3 VAL A 72 PRO A 75 1 O LEU A 74 N CYS A 31 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O PHE A 337 N ILE A 245 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 C 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 D 5 ILE B1099 SER B1103 0 SHEET 2 D 5 GLU B1106 ASP B1110 -1 O TYR B1108 N GLU B1100 SHEET 3 D 5 VAL B1003 PHE B1008 -1 N LEU B1004 O LEU B1109 SHEET 4 D 5 VAL B1140 SER B1145 -1 O GLY B1143 N PHE B1005 SHEET 5 D 5 ILE B1163 VAL B1165 1 O LYS B1164 N ILE B1144 SHEET 1 E 3 GLY B1041 ALA B1046 0 SHEET 2 E 3 VAL B1028 PHE B1033 -1 N VAL B1032 O ALA B1042 SHEET 3 E 3 VAL B1072 PRO B1075 1 O LEU B1074 N CYS B1031 SHEET 1 F 4 SER B1244 SER B1255 0 SHEET 2 F 4 ILE B1330 PHE B1340 -1 O PHE B1337 N ILE B1245 SHEET 3 F 4 PRO B1281 THR B1290 -1 N VAL B1289 O ARG B1331 SHEET 4 F 4 ILE B1295 THR B1301 -1 O ARG B1298 N VAL B1286 LINK O3' DA D 812 P DDG D 813 1555 1555 1.59 LINK O3' DC E 905 P 8OG E 906 1555 1555 1.59 LINK O3' 8OG E 906 P DC E 907 1555 1555 1.61 LINK O3' DA H1812 P DDG H1813 1555 1555 1.60 LINK O3' DC J1905 P 8OG J1906 1555 1555 1.59 LINK O3' 8OG J1906 P DC J1907 1555 1555 1.61 LINK CA CA D 418 O HOH D 692 1555 1555 2.53 LINK CA CA D 418 O HOH D 693 1555 1555 1.87 LINK CA CA D 418 O HOH D 694 1555 1555 2.34 LINK CA CA D 418 O HOH D 695 1555 1555 2.52 LINK CA CA D 418 O HOH D 696 1555 1555 2.35 LINK CA CA D 418 O HOH E 691 1555 1555 2.39 LINK O HOH D 688 CA CA A 417 1555 1555 2.39 LINK OP1 DDG D 813 CA CA A 415 1555 1555 2.32 LINK O HOH H1511 CA CA B1415 1555 1555 2.42 LINK O HOH H1512 CA CA B1415 1555 1555 2.32 LINK OP1 DDG H1813 CA CA B1417 1555 1555 2.64 LINK OD2 ASP A 7 CA CA A 415 1555 1555 2.41 LINK OD1 ASP A 7 CA CA A 416 1555 1555 2.31 LINK O PHE A 8 CA CA A 416 1555 1555 2.30 LINK OD2 ASP A 105 CA CA A 416 1555 1555 2.31 LINK OE2 GLU A 106 CA CA A 415 1555 1555 2.31 LINK O ALA A 181 CA CA A 417 1555 1555 2.31 LINK O ILE A 186 CA CA A 417 1555 1555 2.33 LINK O2A DCP A 414 CA CA A 416 1555 1555 2.33 LINK O1B DCP A 414 CA CA A 416 1555 1555 2.31 LINK O1G DCP A 414 CA CA A 416 1555 1555 2.30 LINK CA CA A 415 O HOH A 519 1555 1555 2.35 LINK CA CA A 415 O HOH A 520 1555 1555 2.25 LINK CA CA A 415 O HOH A 521 1555 1555 2.47 LINK CA CA A 417 O HOH A 685 1555 1555 2.49 LINK CA CA A 417 O HOH A 686 1555 1555 2.93 LINK CA CA A 417 O HOH A 687 1555 1555 2.21 LINK CA CA A 417 O HOH A 689 1555 1555 2.25 LINK CA CA A 417 O HOH A 690 1555 1555 2.33 LINK OD2 ASP B1007 CA CA B1416 1555 1555 2.30 LINK OD1 ASP B1007 CA CA B1417 1555 1555 2.45 LINK O PHE B1008 CA CA B1416 1555 1555 2.31 LINK OD2 ASP B1105 CA CA B1416 1555 1555 2.31 LINK OE2 GLU B1106 CA CA B1417 1555 1555 2.55 LINK O ALA B1181 CA CA B1415 1555 1555 2.31 LINK O ILE B1186 CA CA B1415 1555 1555 2.62 LINK O2A DCP B1414 CA CA B1416 1555 1555 2.32 LINK O1B DCP B1414 CA CA B1416 1555 1555 2.31 LINK O1G DCP B1414 CA CA B1416 1555 1555 2.32 LINK CA CA B1415 O HOH B1508 1555 1555 2.31 LINK CA CA B1415 O HOH B1509 1555 1555 2.37 LINK CA CA B1415 O HOH B1510 1555 1555 2.34 LINK CA CA B1417 O HOH B1503 1555 1555 2.31 LINK CA CA B1417 O HOH B1504 1555 1555 2.43 LINK CA CA B1417 O HOH B1505 1555 1555 2.35 SITE 1 AC1 6 ASP A 7 GLU A 106 HOH A 519 HOH A 520 SITE 2 AC1 6 HOH A 521 DDG D 813 SITE 1 AC2 4 ASP A 7 PHE A 8 ASP A 105 DCP A 414 SITE 1 AC3 6 ALA A 181 ILE A 186 HOH A 687 HOH A 689 SITE 2 AC3 6 HOH A 690 HOH D 688 SITE 1 AC4 5 HOH D 692 HOH D 694 HOH D 695 HOH D 696 SITE 2 AC4 5 HOH E 691 SITE 1 AC5 7 ALA B1181 ILE B1186 HOH B1508 HOH B1509 SITE 2 AC5 7 HOH B1510 HOH H1511 HOH H1512 SITE 1 AC6 4 ASP B1007 PHE B1008 ASP B1105 DCP B1414 SITE 1 AC7 6 ASP B1007 GLU B1106 HOH B1503 HOH B1504 SITE 2 AC7 6 HOH B1505 DDG H1813 SITE 1 AC8 20 ASP A 7 PHE A 8 TYR A 10 PHE A 11 SITE 2 AC8 20 TYR A 12 ALA A 44 THR A 45 TYR A 48 SITE 3 AC8 20 ARG A 51 ASP A 105 LYS A 159 CA A 416 SITE 4 AC8 20 HOH A 519 HOH A 520 HOH A 524 HOH A 578 SITE 5 AC8 20 HOH A1682 HOH D 522 DDG D 813 8OG E 906 SITE 1 AC9 19 ASP B1007 PHE B1008 TYR B1010 PHE B1011 SITE 2 AC9 19 TYR B1012 ALA B1044 THR B1045 TYR B1048 SITE 3 AC9 19 ARG B1051 ASP B1105 LYS B1159 CA B1416 SITE 4 AC9 19 HOH B1503 HOH B1505 HOH B1545 HOH B1644 SITE 5 AC9 19 HOH B1651 DDG H1813 8OG J1906 CRYST1 75.955 101.109 84.124 90.00 97.14 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013166 0.000000 0.001649 0.00000 SCALE2 0.000000 0.009890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011980 0.00000