HEADER PROTEIN BINDING 23-AUG-05 2ASQ TITLE SOLUTION STRUCTURE OF SUMO-1 IN COMPLEX WITH A SUMO-BINDING MOTIF TITLE 2 (SBM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: STRUCTURED REGION OF SUMO-1 (RESIDUES 21-97); COMPND 5 SYNONYM: SUMO-1, UBIQUITIN-LIKE PROTEIN SMT3C, SMT3 HOMOLOG 3, COMPND 6 UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1, UBIQUITIN-LIKE PROTEIN UBL1, COMPND 7 GAP MODIFYING PROTEIN 1, GMP1, SENTRIN; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PROTEIN INHIBITOR OF ACTIVATED STAT2; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: SUMO-BINDING MOTIF IN PIASX; COMPND 13 SYNONYM: PROTEIN INHIBITOR OF ACTIVATED STAT X, MSX-INTERACTING ZINC COMPND 14 FINGER PROTEIN, MIZ1, DAB2-INTERACTING PROTEIN, DIP, ANDROGEN COMPND 15 RECEPTOR-INTERACTING PROTEIN 3, ARIP3, PIAS-NY PROTEIN; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUMO1, SMT3C, SMT3H3, UBL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)(NOVAGEN); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A+ (NOVAGEN); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: PIAS2, PIASX; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BLR(DE3)PLYSS (NOVAGEN); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET31A+ KEYWDS PROTEIN-PEPTIDE COMPLEX, SUMO-1, SMALL UBIQUITIN-LIKE MODIFIER 1, KEYWDS 2 SUMO-BINDING MOTIF, SBM, PROTEIN INHIBITOR OF ACTIVATED STAT, PIASX, KEYWDS 3 PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.SONG,Z.ZHANG,W.HU,Y.CHEN REVDAT 6 22-MAY-24 2ASQ 1 REMARK REVDAT 5 09-MAR-22 2ASQ 1 REMARK SEQADV REVDAT 4 24-FEB-09 2ASQ 1 VERSN REVDAT 3 06-DEC-05 2ASQ 1 JRNL REVDAT 2 22-NOV-05 2ASQ 1 JRNL REVDAT 1 11-OCT-05 2ASQ 0 JRNL AUTH J.SONG,Z.ZHANG,W.HU,Y.CHEN JRNL TITL SMALL UBIQUITIN-LIKE MODIFIER (SUMO) RECOGNITION OF A SUMO JRNL TITL 2 BINDING MOTIF: A REVERSAL OF THE BOUND ORIENTATION JRNL REF J.BIOL.CHEM. V. 280 40122 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 16204249 JRNL DOI 10.1074/JBC.M507059200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 1.1, HADDOCK 1.3 REMARK 3 AUTHORS : BRUKER (XWINNMR), BONVIN, ALEXANDRE (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ASQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034269. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1 MM 15N,13C-ENRICHED PIASX-P REMARK 210 PEPTIDE AND UNLABELED SUMO-1; REMARK 210 20MM PHOSPHATE BUFFER PH6.8; 92% REMARK 210 H2O, 8% D2O, 17OC; 1 MM 15N,13C- REMARK 210 ENRICHED SUMO-1 AND UNLABELED REMARK 210 PIASX-P PEPTIDE; 20MM PHOSPHATE REMARK 210 BUFFER PH6.8; 92% H2O, 8% D2O, REMARK 210 17OC REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; HNCA-J; REMARK 210 HCCH-TOCSY; CC(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.1, FELIX 2000, NMRVIEW REMARK 210 5 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 THR A 10 REMARK 465 GLU A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 ASP A 15 REMARK 465 LYS A 16 REMARK 465 LYS A 17 REMARK 465 GLU A 18 REMARK 465 GLY A 19 REMARK 465 GLU A 20 REMARK 465 GLU B 15 REMARK 465 GLU B 16 REMARK 465 GLU B 17 REMARK 465 ASP B 18 REMARK 465 PRO B 19 REMARK 465 PRO B 20 REMARK 465 ALA B 21 REMARK 465 LYS B 22 REMARK 465 ARG B 23 REMARK 465 GLN B 24 REMARK 465 MET B 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 48 OD1 ASP A 73 1.56 REMARK 500 HZ2 LYS A 23 OE2 GLU A 84 1.58 REMARK 500 HZ2 LYS A 25 OE1 GLU A 33 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 41 -20.53 154.31 REMARK 500 1 ASN A 60 -0.85 75.70 REMARK 500 1 ASN A 74 34.24 -86.99 REMARK 500 1 LEU A 80 -47.29 73.62 REMARK 500 1 ILE B 9 94.04 -67.55 REMARK 500 1 GLU B 10 -63.50 -156.24 REMARK 500 2 THR A 41 -46.32 -163.74 REMARK 500 2 LEU A 80 -36.24 72.72 REMARK 500 2 SER B 11 -57.30 -141.29 REMARK 500 2 SER B 12 -86.73 -166.75 REMARK 500 2 SER B 13 50.59 -94.48 REMARK 500 3 THR A 41 -60.31 -166.80 REMARK 500 3 ASN A 60 -0.19 78.96 REMARK 500 3 LEU A 80 -29.96 72.04 REMARK 500 3 GLU A 83 -169.06 -125.37 REMARK 500 4 THR A 41 -36.48 168.52 REMARK 500 4 LEU A 80 -9.37 70.13 REMARK 500 5 THR A 41 -51.59 -164.88 REMARK 500 5 ASN A 60 -12.09 78.53 REMARK 500 5 LEU A 80 -29.54 73.05 REMARK 500 6 THR A 41 -55.82 -166.30 REMARK 500 6 LEU A 80 -54.75 72.07 REMARK 500 6 GLU A 83 -168.74 -124.79 REMARK 500 6 GLU B 10 -67.43 -144.24 REMARK 500 6 SER B 12 108.22 -55.37 REMARK 500 6 SER B 13 -23.62 -165.53 REMARK 500 7 MET A 40 86.20 -69.39 REMARK 500 7 THR A 41 -52.32 -164.53 REMARK 500 7 ASN A 60 -18.36 -170.10 REMARK 500 7 LEU A 80 -1.13 68.68 REMARK 500 8 THR A 41 -46.90 -167.74 REMARK 500 8 LEU A 80 -49.94 73.92 REMARK 500 8 SER B 11 -54.71 -132.61 REMARK 500 9 THR A 41 -59.42 -165.04 REMARK 500 9 ASN A 60 -16.12 -156.87 REMARK 500 9 LEU A 80 -3.23 73.13 REMARK 500 10 THR A 41 -44.62 -170.45 REMARK 500 10 LEU A 80 -42.56 73.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z5S RELATED DB: PDB REMARK 900 ANOTHER EXAMPLE OF SUMO-1 IN COMPLEX WITH THE SUMO-BINDING MOTIF. REMARK 900 RELATED ID: 1WYW RELATED DB: PDB REMARK 900 ANOTHER EXAMPLE OF SUMO-1 IN COMPLEX WITH THE SUMO-BINDING MOTIF. DBREF 2ASQ A 1 97 UNP P63165 SUMO1_HUMAN 1 97 DBREF 2ASQ B 1 23 UNP O75928 PIAS2_HUMAN 466 488 SEQADV 2ASQ GLN B 24 UNP O75928 CLONING ARTIFACT SEQADV 2ASQ MET B 25 UNP O75928 CLONING ARTIFACT SEQRES 1 A 97 MET SER ASP GLN GLU ALA LYS PRO SER THR GLU ASP LEU SEQRES 2 A 97 GLY ASP LYS LYS GLU GLY GLU TYR ILE LYS LEU LYS VAL SEQRES 3 A 97 ILE GLY GLN ASP SER SER GLU ILE HIS PHE LYS VAL LYS SEQRES 4 A 97 MET THR THR HIS LEU LYS LYS LEU LYS GLU SER TYR CYS SEQRES 5 A 97 GLN ARG GLN GLY VAL PRO MET ASN SER LEU ARG PHE LEU SEQRES 6 A 97 PHE GLU GLY GLN ARG ILE ALA ASP ASN HIS THR PRO LYS SEQRES 7 A 97 GLU LEU GLY MET GLU GLU GLU ASP VAL ILE GLU VAL TYR SEQRES 8 A 97 GLN GLU GLN THR GLY GLY SEQRES 1 B 25 LYS VAL ASP VAL ILE ASP LEU THR ILE GLU SER SER SER SEQRES 2 B 25 ASP GLU GLU GLU ASP PRO PRO ALA LYS ARG GLN MET HELIX 1 1 HIS A 43 GLY A 56 1 14 SHEET 1 A 6 GLN A 69 ARG A 70 0 SHEET 2 A 6 LEU A 62 PHE A 66 -1 N PHE A 66 O GLN A 69 SHEET 3 A 6 ASP A 86 GLN A 92 -1 O TYR A 91 N ARG A 63 SHEET 4 A 6 ILE A 22 GLY A 28 1 N LYS A 25 O ILE A 88 SHEET 5 A 6 SER A 32 VAL A 38 -1 O VAL A 38 N ILE A 22 SHEET 6 A 6 VAL B 4 ASP B 6 1 O ILE B 5 N HIS A 35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1