HEADER UNKNOWN FUNCTION 24-AUG-05 2ASX OBSLTE 19-JAN-11 2ASX 2L7H TITLE THE SOLUTION STRUCTURE OF THE HAMP DOMAIN OF THE HYPOTHETICAL TITLE 2 TRANSMEMBRANE RECEPTOR AF1503 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN AF1503; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HAMP DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: AF1503; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS HOMODIMER, PARALLEL COILED-COIL, COMPLEMENTARY X-DA PACKING, UNKNOWN KEYWDS 2 FUNCTION EXPDTA SOLUTION NMR NUMMDL 22 AUTHOR M.COLES,V.TRUFFAULT,M.HULKO,J.MARTIN,A.N.LUPAS REVDAT 4 19-JAN-11 2ASX 1 OBSLTE REVDAT 3 24-FEB-09 2ASX 1 VERSN REVDAT 2 14-AUG-07 2ASX 1 JRNL REVDAT 1 29-AUG-06 2ASX 0 JRNL AUTH M.HULKO,F.BERNDT,M.GRUBER,J.U.LINDER,V.TRUFFAULT,A.SCHULTZ, JRNL AUTH 2 J.MARTIN,J.E.SCHULTZ,A.N.LUPAS,M.COLES JRNL TITL THE HAMP DOMAIN STRUCTURE IMPLIES HELIX ROTATION IN JRNL TITL 2 TRANSMEMBRANE SIGNALING JRNL REF CELL(CAMBRIDGE,MASS.) V. 126 929 2006 JRNL REFN ISSN 0092-8674 JRNL PMID 16959559 JRNL DOI 10.1016/J.CELL.2006.06.058 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH-2.9.7 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE IS BASED ON A TOTAL OF REMARK 3 538 DISTANCE RESTRAINTS, 148 DIHEDRAL RESTRAINTS, 45 J-COUPLING REMARK 3 RESTRAINTS AND 29 HYDROGEN BONDS REMARK 4 REMARK 4 2ASX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-05. REMARK 100 THE RCSB ID CODE IS RCSB034275. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 150MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM HAMP, 20 MM PHOSPHATE REMARK 210 BUFFER, 150MM NACL, 90% H2O, 10% REMARK 210 D2O; 1.0MM U-15N HAMP, 20MM REMARK 210 PHOSPHATE BUFFER, 150MM NACL, 90% REMARK 210 H2O, 10% D2O; 0.5MM U-1513CN REMARK 210 HAMP, 0.5MM HAMP, 20MM PHOSPHATE REMARK 210 BUFFER, 150MM NACL, 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 2D REMARK 210 NOESY; HNHA; 2D_12C-FILTERED/13C- REMARK 210 EDITED_NOESY; 3D-NNH-NOESY; 3D- REMARK 210 CNH-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH-2.9.7, XWINNMR 3.5, REMARK 210 SPARKY 3.110 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 22 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST DEVIATION FROM REMARK 210 EXPERIMENTAL RESTRAINTS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: INTERMOLECULAR CONTACTS IDENTIFIED USING A DIFFERENTIALLY REMARK 210 15N,13C-LABELLED/UNLABELLED DIMER SAMPLE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 313 H LYS B 317 1.90 REMARK 500 O GLY A 313 H LYS A 317 1.91 REMARK 500 O LYS B 317 H ARG B 321 1.94 REMARK 500 O LYS A 317 H ARG A 321 1.94 REMARK 500 O ILE B 285 H ASN B 289 1.98 REMARK 500 O PRO B 283 H LEU B 287 1.98 REMARK 500 O ILE A 285 H ASN A 289 1.98 REMARK 500 O ALA B 291 H ALA B 295 1.98 REMARK 500 O PRO A 283 H LEU A 287 1.98 REMARK 500 O ALA A 291 H ALA A 295 1.99 REMARK 500 OE1 GLU B 320 HE ARG B 323 1.99 REMARK 500 OE1 GLU A 320 HE ARG A 323 1.99 REMARK 500 O LEU A 299 HH11 ARG A 323 1.99 REMARK 500 O ASP B 310 H ILE B 314 2.00 REMARK 500 O LEU B 299 HH11 ARG B 323 2.00 REMARK 500 HH21 ARG B 308 OD2 ASP B 310 2.00 REMARK 500 HH21 ARG A 308 OD2 ASP A 310 2.00 REMARK 500 O ASP A 310 H ILE A 314 2.01 REMARK 500 O ILE B 319 H ARG B 323 2.02 REMARK 500 O ILE A 319 H ARG A 323 2.03 REMARK 500 OE2 GLU B 320 HH21 ARG B 323 2.03 REMARK 500 OE2 GLU A 320 HH21 ARG A 323 2.03 REMARK 500 O LYS B 293 H ASN B 298 2.05 REMARK 500 O LYS A 293 H ASN A 298 2.05 REMARK 500 O ASN B 298 H ALA B 301 2.06 REMARK 500 O ASN A 298 H ALA A 301 2.07 REMARK 500 O THR B 281 H ILE B 285 2.07 REMARK 500 O THR A 281 H ILE A 285 2.07 REMARK 500 O GLU B 286 H THR B 290 2.08 REMARK 500 O GLU A 286 H THR A 290 2.08 REMARK 500 O VAL A 328 H GLU A 331 2.08 REMARK 500 O ILE B 284 H SER B 288 2.09 REMARK 500 O ILE A 284 H SER A 288 2.10 REMARK 500 O LEU B 322 H LEU B 326 2.10 REMARK 500 O SER A 288 H ASP A 292 2.10 REMARK 500 O LEU A 322 H LEU A 326 2.10 REMARK 500 O SER B 288 H ASP B 292 2.10 REMARK 500 O ALA B 316 H GLU B 320 2.11 REMARK 500 O ALA A 316 H GLU A 320 2.11 REMARK 500 O THR A 290 H ILE A 294 2.11 REMARK 500 O THR B 290 H ILE B 294 2.12 REMARK 500 O SER B 318 H LEU B 322 2.12 REMARK 500 O SER A 318 H LEU A 322 2.12 REMARK 500 O LEU B 326 H MET B 330 2.12 REMARK 500 O ILE B 314 H SER B 318 2.12 REMARK 500 O ILE A 314 H SER A 318 2.13 REMARK 500 O ASP B 292 H GLU B 296 2.13 REMARK 500 O ASP A 292 H GLU A 296 2.13 REMARK 500 O ARG B 282 H GLU B 286 2.13 REMARK 500 O LEU A 326 HG3 MET A 330 2.13 REMARK 500 REMARK 500 THIS ENTRY HAS 2701 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 305 13.21 58.56 REMARK 500 1 ASP A 310 -168.82 -118.81 REMARK 500 1 HIS B 305 13.31 58.50 REMARK 500 1 ASP B 310 -168.52 -118.87 REMARK 500 2 HIS A 305 13.16 58.92 REMARK 500 2 ASP A 310 -168.80 -118.66 REMARK 500 2 HIS B 305 13.21 58.76 REMARK 500 2 ASP B 310 -168.43 -118.76 REMARK 500 3 HIS A 305 14.57 59.02 REMARK 500 3 ASP A 310 -168.87 -118.61 REMARK 500 3 HIS B 305 14.73 58.94 REMARK 500 3 ASP B 310 -168.60 -118.62 REMARK 500 4 HIS A 305 13.33 58.70 REMARK 500 4 ASP A 310 -168.89 -118.66 REMARK 500 4 HIS B 305 13.47 58.61 REMARK 500 4 ASP B 310 -168.56 -118.69 REMARK 500 5 HIS A 305 13.41 58.63 REMARK 500 5 ASP A 310 -168.90 -118.59 REMARK 500 5 HIS B 305 13.42 58.62 REMARK 500 5 ASP B 310 -168.58 -118.73 REMARK 500 6 HIS A 305 12.80 59.18 REMARK 500 6 ASP A 310 -168.93 -118.64 REMARK 500 6 HIS B 305 12.90 59.11 REMARK 500 6 ASP B 310 -168.65 -118.71 REMARK 500 7 HIS A 305 13.06 59.04 REMARK 500 7 ASP A 310 -168.50 -118.44 REMARK 500 7 HIS B 305 13.11 59.07 REMARK 500 7 ASP B 310 -168.25 -118.61 REMARK 500 8 HIS A 305 12.57 59.20 REMARK 500 8 ASP A 310 -169.36 -118.49 REMARK 500 8 HIS B 305 12.81 58.93 REMARK 500 8 ASP B 310 -169.12 -118.57 REMARK 500 9 HIS A 305 12.52 59.32 REMARK 500 9 ASP A 310 -169.30 -118.73 REMARK 500 9 HIS B 305 12.67 59.19 REMARK 500 9 ASP B 310 -169.15 -118.88 REMARK 500 10 HIS A 305 13.28 58.68 REMARK 500 10 ASP A 310 -168.84 -118.64 REMARK 500 10 HIS B 305 13.52 58.54 REMARK 500 10 ASP B 310 -168.62 -118.65 REMARK 500 11 HIS A 305 12.35 59.65 REMARK 500 11 ASP A 310 -168.61 -118.15 REMARK 500 11 HIS B 305 12.55 59.37 REMARK 500 11 ASP B 310 -168.28 -118.22 REMARK 500 12 HIS A 305 12.34 59.59 REMARK 500 12 ASP A 310 -169.59 -118.80 REMARK 500 12 SER B 278 -33.15 -176.02 REMARK 500 12 HIS B 305 12.36 59.48 REMARK 500 12 ASP B 310 -169.43 -118.90 REMARK 500 13 HIS A 305 13.22 58.93 REMARK 500 REMARK 500 THIS ENTRY HAS 90 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ASW RELATED DB: PDB REMARK 900 REGULARIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 6795 RELATED DB: BMRB DBREF 2ASX A 278 331 UNP O28769 O28769_ARCFU 278 331 DBREF 2ASX B 278 331 UNP O28769 O28769_ARCFU 278 331 SEQADV 2ASX GLY A 276 UNP O28769 CLONING ARTIFACT SEQADV 2ASX SER A 277 UNP O28769 CLONING ARTIFACT SEQADV 2ASX GLY B 276 UNP O28769 CLONING ARTIFACT SEQADV 2ASX SER B 277 UNP O28769 CLONING ARTIFACT SEQRES 1 A 56 GLY SER SER THR ILE THR ARG PRO ILE ILE GLU LEU SER SEQRES 2 A 56 ASN THR ALA ASP LYS ILE ALA GLU GLY ASN LEU GLU ALA SEQRES 3 A 56 GLU VAL PRO HIS GLN ASN ARG ALA ASP GLU ILE GLY ILE SEQRES 4 A 56 LEU ALA LYS SER ILE GLU ARG LEU ARG ARG SER LEU LYS SEQRES 5 A 56 VAL ALA MET GLU SEQRES 1 B 56 GLY SER SER THR ILE THR ARG PRO ILE ILE GLU LEU SER SEQRES 2 B 56 ASN THR ALA ASP LYS ILE ALA GLU GLY ASN LEU GLU ALA SEQRES 3 B 56 GLU VAL PRO HIS GLN ASN ARG ALA ASP GLU ILE GLY ILE SEQRES 4 B 56 LEU ALA LYS SER ILE GLU ARG LEU ARG ARG SER LEU LYS SEQRES 5 B 56 VAL ALA MET GLU HELIX 1 1 GLY A 276 GLU A 296 1 21 HELIX 2 2 ASP A 310 GLU A 331 1 22 HELIX 3 3 SER B 277 GLU B 296 1 20 HELIX 4 4 ASP B 310 GLU B 331 1 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1