data_2AT7 # _entry.id 2AT7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2AT7 RCSB RCSB034283 WWPDB D_1000034283 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2008-03-04 _pdbx_database_PDB_obs_spr.pdb_id 3C78 _pdbx_database_PDB_obs_spr.replace_pdb_id 2AT7 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2at8 'Nitrophorin 4 Containing Fe(III) 2,4 Dimethyl Deuteroporphyrin IX Complexed With Nitric Oxide at pH 5.6' unspecified PDB 2AT4 'Nitrophorin 4 Containing Fe(III) Deuteroporphyrin IX Complexed With Ammonia at pH 7.5' unspecified PDB 1X8P 'Nitrophorin 4 Complexed with Ammonia at pH 7.4' unspecified # _pdbx_database_status.entry_id 2AT7 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-08-24 _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Amoia, A.M.' 1 'Montfort, W.R.' 2 # _citation.id primary _citation.title 'Heme distortion in nitrophorin 4: high resolution structures of mutated positions L123V and L133V and heme altered proteins' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Amoia, A.M.' 1 primary 'Montfort, W.R.' 2 # _cell.length_a 69.873 _cell.length_b 42.490 _cell.length_c 52.633 _cell.angle_alpha 90.00 _cell.angle_beta 94.08 _cell.angle_gamma 90.00 _cell.entry_id 2AT7 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 2AT7 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 5 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nitrophorin 4' 20292.664 1 ? ? ? ? 2 non-polymer syn 'AMMONIUM ION' 18.038 1 ? ? ? ? 3 non-polymer syn 'FE(III) 2,4-DIMETHYL DEUTEROPORPHYRIN IX' 592.466 1 ? ? ? ? 4 water nat water 18.015 278 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name NP4 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ACTKNAIAQTGFNKDKYFNGDVWYVTDYLDLEPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTFYDVSELQVESLG KYTANFKKVDKNGNVKVAVTAGNYYTFTVMYADDSSALIHTCLHKGNKDLGDLYAVLNRNKDAAAGDKVKSAVSAATLEF SKFISTKENNCAYDNDSLKSLLTK ; _entity_poly.pdbx_seq_one_letter_code_can ;ACTKNAIAQTGFNKDKYFNGDVWYVTDYLDLEPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTFYDVSELQVESLG KYTANFKKVDKNGNVKVAVTAGNYYTFTVMYADDSSALIHTCLHKGNKDLGDLYAVLNRNKDAAAGDKVKSAVSAATLEF SKFISTKENNCAYDNDSLKSLLTK ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 CYS n 1 3 THR n 1 4 LYS n 1 5 ASN n 1 6 ALA n 1 7 ILE n 1 8 ALA n 1 9 GLN n 1 10 THR n 1 11 GLY n 1 12 PHE n 1 13 ASN n 1 14 LYS n 1 15 ASP n 1 16 LYS n 1 17 TYR n 1 18 PHE n 1 19 ASN n 1 20 GLY n 1 21 ASP n 1 22 VAL n 1 23 TRP n 1 24 TYR n 1 25 VAL n 1 26 THR n 1 27 ASP n 1 28 TYR n 1 29 LEU n 1 30 ASP n 1 31 LEU n 1 32 GLU n 1 33 PRO n 1 34 ASP n 1 35 ASP n 1 36 VAL n 1 37 PRO n 1 38 LYS n 1 39 ARG n 1 40 TYR n 1 41 CYS n 1 42 ALA n 1 43 ALA n 1 44 LEU n 1 45 ALA n 1 46 ALA n 1 47 GLY n 1 48 THR n 1 49 ALA n 1 50 SER n 1 51 GLY n 1 52 LYS n 1 53 LEU n 1 54 LYS n 1 55 GLU n 1 56 ALA n 1 57 LEU n 1 58 TYR n 1 59 HIS n 1 60 TYR n 1 61 ASP n 1 62 PRO n 1 63 LYS n 1 64 THR n 1 65 GLN n 1 66 ASP n 1 67 THR n 1 68 PHE n 1 69 TYR n 1 70 ASP n 1 71 VAL n 1 72 SER n 1 73 GLU n 1 74 LEU n 1 75 GLN n 1 76 VAL n 1 77 GLU n 1 78 SER n 1 79 LEU n 1 80 GLY n 1 81 LYS n 1 82 TYR n 1 83 THR n 1 84 ALA n 1 85 ASN n 1 86 PHE n 1 87 LYS n 1 88 LYS n 1 89 VAL n 1 90 ASP n 1 91 LYS n 1 92 ASN n 1 93 GLY n 1 94 ASN n 1 95 VAL n 1 96 LYS n 1 97 VAL n 1 98 ALA n 1 99 VAL n 1 100 THR n 1 101 ALA n 1 102 GLY n 1 103 ASN n 1 104 TYR n 1 105 TYR n 1 106 THR n 1 107 PHE n 1 108 THR n 1 109 VAL n 1 110 MET n 1 111 TYR n 1 112 ALA n 1 113 ASP n 1 114 ASP n 1 115 SER n 1 116 SER n 1 117 ALA n 1 118 LEU n 1 119 ILE n 1 120 HIS n 1 121 THR n 1 122 CYS n 1 123 LEU n 1 124 HIS n 1 125 LYS n 1 126 GLY n 1 127 ASN n 1 128 LYS n 1 129 ASP n 1 130 LEU n 1 131 GLY n 1 132 ASP n 1 133 LEU n 1 134 TYR n 1 135 ALA n 1 136 VAL n 1 137 LEU n 1 138 ASN n 1 139 ARG n 1 140 ASN n 1 141 LYS n 1 142 ASP n 1 143 ALA n 1 144 ALA n 1 145 ALA n 1 146 GLY n 1 147 ASP n 1 148 LYS n 1 149 VAL n 1 150 LYS n 1 151 SER n 1 152 ALA n 1 153 VAL n 1 154 SER n 1 155 ALA n 1 156 ALA n 1 157 THR n 1 158 LEU n 1 159 GLU n 1 160 PHE n 1 161 SER n 1 162 LYS n 1 163 PHE n 1 164 ILE n 1 165 SER n 1 166 THR n 1 167 LYS n 1 168 GLU n 1 169 ASN n 1 170 ASN n 1 171 CYS n 1 172 ALA n 1 173 TYR n 1 174 ASP n 1 175 ASN n 1 176 ASP n 1 177 SER n 1 178 LEU n 1 179 LYS n 1 180 SER n 1 181 LEU n 1 182 LEU n 1 183 THR n 1 184 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Triatomid bug' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rhodnius prolixus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name bacteria _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET17b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NP4_RHOPR _struct_ref.pdbx_db_accession Q94734 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2AT7 _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 184 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q94734 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 205 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 184 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FDD non-polymer . 'FE(III) 2,4-DIMETHYL DEUTEROPORPHYRIN IX' ? 'C32 H32 Fe N4 O4 5' 592.466 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH4 non-polymer . 'AMMONIUM ION' ? 'H4 N 1' 18.038 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2AT7 _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.57 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 20.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 300.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'ammonium phosphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 300.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-02-23 _diffrn_detector.details 'Bent conical Si-mirror (Rh coating)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Bent Ge(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-C' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-C # _reflns.entry_id 2AT7 _reflns.d_resolution_low 20.28 _reflns.d_resolution_high 0.98 _reflns.number_obs 75395 _reflns.percent_possible_obs 85.500 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_chi_squared ? _reflns.pdbx_redundancy 4.52 _reflns.pdbx_scaling_rejects 38202 _reflns.pdbx_netI_over_av_sigmaI 30.3 _reflns.pdbx_Rsym_value 0.08 _reflns.observed_criterion_sigma_F 0.00 _reflns.observed_criterion_sigma_I 0.00 _reflns.number_all ? _reflns.B_iso_Wilson_estimate 13.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_netI_over_sigmaI ? # _reflns_shell.d_res_low 1.02 _reflns_shell.d_res_high 0.98 _reflns_shell.number_measured_obs 2200 _reflns_shell.percent_possible_obs 71.500 _reflns_shell.Rmerge_I_obs 0.4 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy 2.04 _reflns_shell.number_unique_obs ? _reflns_shell.meanI_over_sigI_obs 4.3 _reflns_shell.pdbx_Rsym_value 0.4 _reflns_shell.percent_possible_all 72 _reflns_shell.number_unique_all 6245 _reflns_shell.number_measured_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 0.980 _refine.ls_d_res_low 20.3 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 85.450 _refine.ls_number_reflns_obs 75355 _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'Anisotropic refinement reduced Free R. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.167 _refine.ls_R_factor_R_work 0.165 _refine.ls_R_factor_R_free 0.189 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 3769 _refine.B_iso_mean 13.946 _refine.aniso_B[1][1] 0.020 _refine.aniso_B[2][2] -0.060 _refine.aniso_B[3][3] 0.010 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.260 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.960 _refine.pdbx_overall_ESU_R 0.034 _refine.pdbx_overall_ESU_R_Free 0.034 _refine.overall_SU_ML 0.019 _refine.overall_SU_B 0.746 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.entry_id 2AT7 _refine.pdbx_ls_sigma_I 0.00 _refine.ls_number_reflns_all 75355 _refine.ls_R_factor_obs 0.167 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model 'PDB entry 1X8P' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model anisotropic _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2AT7 _refine_analyze.Luzzati_coordinate_error_obs 0.37 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 3.64 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1734 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 278 _refine_hist.number_atoms_total 2054 _refine_hist.d_res_high 0.980 _refine_hist.d_res_low 20.3 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1844 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2555 2.446 1.984 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 246 7.060 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 81 39.020 25.556 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 304 12.115 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 3 6.927 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 267 0.171 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1482 0.010 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1014 0.376 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1296 0.312 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 244 0.148 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 2 0.022 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 65 0.179 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 39 0.145 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1140 1.573 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1836 2.248 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 818 2.931 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 717 3.637 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1958 2.118 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 279 6.482 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 1775 3.857 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 0.980 _refine_ls_shell.d_res_low 1.005 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 70.190 _refine_ls_shell.number_reflns_R_work 4332 _refine_ls_shell.R_factor_R_work 0.265 _refine_ls_shell.R_factor_R_free 0.269 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 192 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 4524 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 2AT7 _struct.title ;0.98 A Crystal Structure Of Nitrophorin 4 From Rhodnius Prolixus Containing Fe(III) 2,4 Dimethyl Deuteroporphyrin IX Complexed With Ammonia at pH 7.5 ; _struct.pdbx_descriptor 'Nitrophorin 4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2AT7 _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'Lipocalin, beta barrel, ferric, heme analog, Fe(III) 2, 4 Dimethyl Deuteroporphyrin IX, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a monomer consisting of chain X and the Fe(III) 2,4 Dimethyl Deuteroporphyrin IX, and can be generated by the identity operation: x,y,z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 13 ? PHE A 18 ? ASN X 13 PHE X 18 1 ? 6 HELX_P HELX_P2 2 GLY A 146 ? ALA A 156 ? GLY X 146 ALA X 156 1 ? 11 HELX_P HELX_P3 3 GLU A 159 ? PHE A 163 ? GLU X 159 PHE X 163 5 ? 5 HELX_P HELX_P4 4 ASP A 174 ? LEU A 182 ? ASP X 174 LEU X 182 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 122 SG ? ? X CYS 2 X CYS 122 1_555 ? ? ? ? ? ? ? 2.052 ? disulf2 disulf ? ? A CYS 41 SG A ? ? 1_555 A CYS 171 SG A ? X CYS 41 X CYS 171 1_555 ? ? ? ? ? ? ? 2.038 ? disulf3 disulf ? ? A CYS 41 SG B ? ? 1_555 A CYS 171 SG B ? X CYS 41 X CYS 171 1_555 ? ? ? ? ? ? ? 2.006 ? metalc1 metalc ? ? A HIS 59 NE2 ? ? ? 1_555 C FDD . FE ? ? X HIS 59 X FDD 185 1_555 ? ? ? ? ? ? ? 1.971 ? metalc2 metalc ? ? B NH4 . N ? ? ? 1_555 C FDD . FE ? ? X NH4 700 X FDD 185 1_555 ? ? ? ? ? ? ? 1.989 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 9 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 95 ? VAL A 97 ? VAL X 95 VAL X 97 A 2 LYS A 87 ? VAL A 89 ? LYS X 87 VAL X 89 A 3 THR A 67 ? SER A 78 ? THR X 67 SER X 78 A 4 LYS A 52 ? TYR A 60 ? LYS X 52 TYR X 60 A 5 CYS A 41 ? ALA A 49 ? CYS X 41 ALA X 49 A 6 ASN A 19 ? ASP A 30 ? ASN X 19 ASP X 30 A 7 ILE A 164 ? SER A 165 ? ILE X 164 SER X 165 B 1 VAL A 95 ? VAL A 97 ? VAL X 95 VAL X 97 B 2 LYS A 87 ? VAL A 89 ? LYS X 87 VAL X 89 B 3 THR A 67 ? SER A 78 ? THR X 67 SER X 78 B 4 LYS A 81 ? ALA A 84 ? LYS X 81 ALA X 84 B 5 ASN A 103 ? ALA A 112 ? ASN X 103 ALA X 112 B 6 SER A 116 ? LYS A 125 ? SER X 116 LYS X 125 B 7 LEU A 133 ? ASN A 138 ? LEU X 133 ASN X 138 B 8 ASN A 19 ? ASP A 30 ? ASN X 19 ASP X 30 B 9 ILE A 164 ? SER A 165 ? ILE X 164 SER X 165 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 96 ? O LYS X 96 N LYS A 88 ? N LYS X 88 A 2 3 O LYS A 87 ? O LYS X 87 N VAL A 71 ? N VAL X 71 A 3 4 O ASP A 70 ? O ASP X 70 N LEU A 57 ? N LEU X 57 A 4 5 O LYS A 54 ? O LYS X 54 N GLY A 47 ? N GLY X 47 A 5 6 O LEU A 44 ? O LEU X 44 N TRP A 23 ? N TRP X 23 A 6 7 N TYR A 28 ? N TYR X 28 O ILE A 164 ? O ILE X 164 B 1 2 O LYS A 96 ? O LYS X 96 N LYS A 88 ? N LYS X 88 B 2 3 O LYS A 87 ? O LYS X 87 N VAL A 71 ? N VAL X 71 B 3 4 N GLU A 77 ? N GLU X 77 O LYS A 81 ? O LYS X 81 B 4 5 N ALA A 84 ? N ALA X 84 O TYR A 105 ? O TYR X 105 B 5 6 N TYR A 104 ? N TYR X 104 O HIS A 124 ? O HIS X 124 B 6 7 N ALA A 117 ? N ALA X 117 O LEU A 137 ? O LEU X 137 B 7 8 O ASN A 138 ? O ASN X 138 N TYR A 24 ? N TYR X 24 B 8 9 N TYR A 28 ? N TYR X 28 O ILE A 164 ? O ILE X 164 # _atom_sites.entry_id 2AT7 _atom_sites.fract_transf_matrix[1][1] 0.01431 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00102 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.02354 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01905 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA X . n A 1 2 CYS 2 2 2 CYS CYS X . n A 1 3 THR 3 3 3 THR THR X . n A 1 4 LYS 4 4 4 LYS LYS X . n A 1 5 ASN 5 5 5 ASN ASN X . n A 1 6 ALA 6 6 6 ALA ALA X . n A 1 7 ILE 7 7 7 ILE ILE X . n A 1 8 ALA 8 8 8 ALA ALA X . n A 1 9 GLN 9 9 9 GLN GLN X . n A 1 10 THR 10 10 10 THR THR X . n A 1 11 GLY 11 11 11 GLY GLY X . n A 1 12 PHE 12 12 12 PHE PHE X . n A 1 13 ASN 13 13 13 ASN ASN X . n A 1 14 LYS 14 14 14 LYS LYS X . n A 1 15 ASP 15 15 15 ASP ASP X . n A 1 16 LYS 16 16 16 LYS LYS X . n A 1 17 TYR 17 17 17 TYR TYR X . n A 1 18 PHE 18 18 18 PHE PHE X . n A 1 19 ASN 19 19 19 ASN ASN X . n A 1 20 GLY 20 20 20 GLY GLY X . n A 1 21 ASP 21 21 21 ASP ASP X . n A 1 22 VAL 22 22 22 VAL VAL X . n A 1 23 TRP 23 23 23 TRP TRP X . n A 1 24 TYR 24 24 24 TYR TYR X . n A 1 25 VAL 25 25 25 VAL VAL X . n A 1 26 THR 26 26 26 THR THR X . n A 1 27 ASP 27 27 27 ASP ASP X . n A 1 28 TYR 28 28 28 TYR TYR X . n A 1 29 LEU 29 29 29 LEU LEU X . n A 1 30 ASP 30 30 30 ASP ASP X . n A 1 31 LEU 31 31 31 LEU LEU X . n A 1 32 GLU 32 32 32 GLU GLU X . n A 1 33 PRO 33 33 33 PRO PRO X . n A 1 34 ASP 34 34 34 ASP ASP X . n A 1 35 ASP 35 35 35 ASP ASP X . n A 1 36 VAL 36 36 36 VAL VAL X . n A 1 37 PRO 37 37 37 PRO PRO X . n A 1 38 LYS 38 38 38 LYS LYS X . n A 1 39 ARG 39 39 39 ARG ARG X . n A 1 40 TYR 40 40 40 TYR TYR X . n A 1 41 CYS 41 41 41 CYS CYS X . n A 1 42 ALA 42 42 42 ALA ALA X . n A 1 43 ALA 43 43 43 ALA ALA X . n A 1 44 LEU 44 44 44 LEU LEU X . n A 1 45 ALA 45 45 45 ALA ALA X . n A 1 46 ALA 46 46 46 ALA ALA X . n A 1 47 GLY 47 47 47 GLY GLY X . n A 1 48 THR 48 48 48 THR THR X . n A 1 49 ALA 49 49 49 ALA ALA X . n A 1 50 SER 50 50 50 SER SER X . n A 1 51 GLY 51 51 51 GLY GLY X . n A 1 52 LYS 52 52 52 LYS LYS X . n A 1 53 LEU 53 53 53 LEU LEU X . n A 1 54 LYS 54 54 54 LYS LYS X . n A 1 55 GLU 55 55 55 GLU GLU X . n A 1 56 ALA 56 56 56 ALA ALA X . n A 1 57 LEU 57 57 57 LEU LEU X . n A 1 58 TYR 58 58 58 TYR TYR X . n A 1 59 HIS 59 59 59 HIS HIS X . n A 1 60 TYR 60 60 60 TYR TYR X . n A 1 61 ASP 61 61 61 ASP ASP X . n A 1 62 PRO 62 62 62 PRO PRO X . n A 1 63 LYS 63 63 63 LYS LYS X . n A 1 64 THR 64 64 64 THR THR X . n A 1 65 GLN 65 65 65 GLN GLN X . n A 1 66 ASP 66 66 66 ASP ASP X . n A 1 67 THR 67 67 67 THR THR X . n A 1 68 PHE 68 68 68 PHE PHE X . n A 1 69 TYR 69 69 69 TYR TYR X . n A 1 70 ASP 70 70 70 ASP ASP X . n A 1 71 VAL 71 71 71 VAL VAL X . n A 1 72 SER 72 72 72 SER SER X . n A 1 73 GLU 73 73 73 GLU GLU X . n A 1 74 LEU 74 74 74 LEU LEU X . n A 1 75 GLN 75 75 75 GLN GLN X . n A 1 76 VAL 76 76 76 VAL VAL X . n A 1 77 GLU 77 77 77 GLU GLU X . n A 1 78 SER 78 78 78 SER SER X . n A 1 79 LEU 79 79 79 LEU LEU X . n A 1 80 GLY 80 80 80 GLY GLY X . n A 1 81 LYS 81 81 81 LYS LYS X . n A 1 82 TYR 82 82 82 TYR TYR X . n A 1 83 THR 83 83 83 THR THR X . n A 1 84 ALA 84 84 84 ALA ALA X . n A 1 85 ASN 85 85 85 ASN ASN X . n A 1 86 PHE 86 86 86 PHE PHE X . n A 1 87 LYS 87 87 87 LYS LYS X . n A 1 88 LYS 88 88 88 LYS LYS X . n A 1 89 VAL 89 89 89 VAL VAL X . n A 1 90 ASP 90 90 90 ASP ASP X . n A 1 91 LYS 91 91 91 LYS LYS X . n A 1 92 ASN 92 92 92 ASN ASN X . n A 1 93 GLY 93 93 93 GLY GLY X . n A 1 94 ASN 94 94 94 ASN ASN X . n A 1 95 VAL 95 95 95 VAL VAL X . n A 1 96 LYS 96 96 96 LYS LYS X . n A 1 97 VAL 97 97 97 VAL VAL X . n A 1 98 ALA 98 98 98 ALA ALA X . n A 1 99 VAL 99 99 99 VAL VAL X . n A 1 100 THR 100 100 100 THR THR X . n A 1 101 ALA 101 101 101 ALA ALA X . n A 1 102 GLY 102 102 102 GLY GLY X . n A 1 103 ASN 103 103 103 ASN ASN X . n A 1 104 TYR 104 104 104 TYR TYR X . n A 1 105 TYR 105 105 105 TYR TYR X . n A 1 106 THR 106 106 106 THR THR X . n A 1 107 PHE 107 107 107 PHE PHE X . n A 1 108 THR 108 108 108 THR THR X . n A 1 109 VAL 109 109 109 VAL VAL X . n A 1 110 MET 110 110 110 MET MET X . n A 1 111 TYR 111 111 111 TYR TYR X . n A 1 112 ALA 112 112 112 ALA ALA X . n A 1 113 ASP 113 113 113 ASP ASP X . n A 1 114 ASP 114 114 114 ASP ASP X . n A 1 115 SER 115 115 115 SER SER X . n A 1 116 SER 116 116 116 SER SER X . n A 1 117 ALA 117 117 117 ALA ALA X . n A 1 118 LEU 118 118 118 LEU LEU X . n A 1 119 ILE 119 119 119 ILE ILE X . n A 1 120 HIS 120 120 120 HIS HIS X . n A 1 121 THR 121 121 121 THR THR X . n A 1 122 CYS 122 122 122 CYS CYS X . n A 1 123 LEU 123 123 123 LEU LEU X . n A 1 124 HIS 124 124 124 HIS HIS X . n A 1 125 LYS 125 125 125 LYS LYS X . n A 1 126 GLY 126 126 126 GLY GLY X . n A 1 127 ASN 127 127 127 ASN ASN X . n A 1 128 LYS 128 128 128 LYS LYS X . n A 1 129 ASP 129 129 129 ASP ASP X . n A 1 130 LEU 130 130 130 LEU LEU X . n A 1 131 GLY 131 131 131 GLY GLY X . n A 1 132 ASP 132 132 132 ASP ASP X . n A 1 133 LEU 133 133 133 LEU LEU X . n A 1 134 TYR 134 134 134 TYR TYR X . n A 1 135 ALA 135 135 135 ALA ALA X . n A 1 136 VAL 136 136 136 VAL VAL X . n A 1 137 LEU 137 137 137 LEU LEU X . n A 1 138 ASN 138 138 138 ASN ASN X . n A 1 139 ARG 139 139 139 ARG ARG X . n A 1 140 ASN 140 140 140 ASN ASN X . n A 1 141 LYS 141 141 141 LYS LYS X . n A 1 142 ASP 142 142 142 ASP ASP X . n A 1 143 ALA 143 143 143 ALA ALA X . n A 1 144 ALA 144 144 144 ALA ALA X . n A 1 145 ALA 145 145 145 ALA ALA X . n A 1 146 GLY 146 146 146 GLY GLY X . n A 1 147 ASP 147 147 147 ASP ASP X . n A 1 148 LYS 148 148 148 LYS LYS X . n A 1 149 VAL 149 149 149 VAL VAL X . n A 1 150 LYS 150 150 150 LYS LYS X . n A 1 151 SER 151 151 151 SER SER X . n A 1 152 ALA 152 152 152 ALA ALA X . n A 1 153 VAL 153 153 153 VAL VAL X . n A 1 154 SER 154 154 154 SER SER X . n A 1 155 ALA 155 155 155 ALA ALA X . n A 1 156 ALA 156 156 156 ALA ALA X . n A 1 157 THR 157 157 157 THR THR X . n A 1 158 LEU 158 158 158 LEU LEU X . n A 1 159 GLU 159 159 159 GLU GLU X . n A 1 160 PHE 160 160 160 PHE PHE X . n A 1 161 SER 161 161 161 SER SER X . n A 1 162 LYS 162 162 162 LYS LYS X . n A 1 163 PHE 163 163 163 PHE PHE X . n A 1 164 ILE 164 164 164 ILE ILE X . n A 1 165 SER 165 165 165 SER SER X . n A 1 166 THR 166 166 166 THR THR X . n A 1 167 LYS 167 167 167 LYS LYS X . n A 1 168 GLU 168 168 168 GLU GLU X . n A 1 169 ASN 169 169 169 ASN ASN X . n A 1 170 ASN 170 170 170 ASN ASN X . n A 1 171 CYS 171 171 171 CYS CYS X . n A 1 172 ALA 172 172 172 ALA ALA X . n A 1 173 TYR 173 173 173 TYR TYR X . n A 1 174 ASP 174 174 174 ASP ASP X . n A 1 175 ASN 175 175 175 ASN ASN X . n A 1 176 ASP 176 176 176 ASP ASP X . n A 1 177 SER 177 177 177 SER SER X . n A 1 178 LEU 178 178 178 LEU LEU X . n A 1 179 LYS 179 179 179 LYS LYS X . n A 1 180 SER 180 180 180 SER SER X . n A 1 181 LEU 181 181 181 LEU LEU X . n A 1 182 LEU 182 182 182 LEU LEU X . n A 1 183 THR 183 183 183 THR THR X . n A 1 184 LYS 184 184 184 LYS LYS X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NH4 1 700 700 NH4 NH4 X . C 3 FDD 1 185 185 FDD FDD X . D 4 HOH 1 701 701 HOH HOH ? . D 4 HOH 2 702 702 HOH HOH ? . D 4 HOH 3 703 703 HOH HOH ? . D 4 HOH 4 704 704 HOH HOH ? . D 4 HOH 5 705 705 HOH HOH ? . D 4 HOH 6 706 706 HOH HOH ? . D 4 HOH 7 707 707 HOH HOH ? . D 4 HOH 8 708 708 HOH HOH ? . D 4 HOH 9 709 709 HOH HOH ? . D 4 HOH 10 710 710 HOH HOH ? . D 4 HOH 11 711 711 HOH HOH ? . D 4 HOH 12 712 712 HOH HOH ? . D 4 HOH 13 713 713 HOH HOH ? . D 4 HOH 14 714 714 HOH HOH ? . D 4 HOH 15 715 715 HOH HOH ? . D 4 HOH 16 716 716 HOH HOH ? . D 4 HOH 17 717 717 HOH HOH ? . D 4 HOH 18 718 718 HOH HOH ? . D 4 HOH 19 719 719 HOH HOH ? . D 4 HOH 20 720 720 HOH HOH ? . D 4 HOH 21 721 721 HOH HOH ? . D 4 HOH 22 722 722 HOH HOH ? . D 4 HOH 23 723 723 HOH HOH ? . D 4 HOH 24 724 724 HOH HOH ? . D 4 HOH 25 725 725 HOH HOH ? . D 4 HOH 26 726 726 HOH HOH ? . D 4 HOH 27 727 727 HOH HOH ? . D 4 HOH 28 728 728 HOH HOH ? . D 4 HOH 29 729 729 HOH HOH ? . D 4 HOH 30 730 730 HOH HOH ? . D 4 HOH 31 731 731 HOH HOH ? . D 4 HOH 32 732 732 HOH HOH ? . D 4 HOH 33 733 733 HOH HOH ? . D 4 HOH 34 734 734 HOH HOH ? . D 4 HOH 35 735 735 HOH HOH ? . D 4 HOH 36 736 736 HOH HOH ? . D 4 HOH 37 737 737 HOH HOH ? . D 4 HOH 38 738 738 HOH HOH ? . D 4 HOH 39 739 739 HOH HOH ? . D 4 HOH 40 740 740 HOH HOH ? . D 4 HOH 41 741 741 HOH HOH ? . D 4 HOH 42 742 742 HOH HOH ? . D 4 HOH 43 743 743 HOH HOH ? . D 4 HOH 44 744 744 HOH HOH ? . D 4 HOH 45 745 745 HOH HOH ? . D 4 HOH 46 746 746 HOH HOH ? . D 4 HOH 47 747 747 HOH HOH ? . D 4 HOH 48 748 748 HOH HOH ? . D 4 HOH 49 749 749 HOH HOH ? . D 4 HOH 50 750 750 HOH HOH ? . D 4 HOH 51 751 751 HOH HOH ? . D 4 HOH 52 752 752 HOH HOH ? . D 4 HOH 53 753 753 HOH HOH ? . D 4 HOH 54 754 754 HOH HOH ? . D 4 HOH 55 755 755 HOH HOH ? . D 4 HOH 56 756 756 HOH HOH ? . D 4 HOH 57 757 757 HOH HOH ? . D 4 HOH 58 758 758 HOH HOH ? . D 4 HOH 59 759 759 HOH HOH ? . D 4 HOH 60 760 760 HOH HOH ? . D 4 HOH 61 761 761 HOH HOH ? . D 4 HOH 62 762 762 HOH HOH ? . D 4 HOH 63 763 763 HOH HOH ? . D 4 HOH 64 764 764 HOH HOH ? . D 4 HOH 65 765 765 HOH HOH ? . D 4 HOH 66 766 766 HOH HOH ? . D 4 HOH 67 767 767 HOH HOH ? . D 4 HOH 68 768 768 HOH HOH ? . D 4 HOH 69 769 769 HOH HOH ? . D 4 HOH 70 770 770 HOH HOH ? . D 4 HOH 71 771 771 HOH HOH ? . D 4 HOH 72 772 772 HOH HOH ? . D 4 HOH 73 773 773 HOH HOH ? . D 4 HOH 74 774 774 HOH HOH ? . D 4 HOH 75 775 775 HOH HOH ? . D 4 HOH 76 776 776 HOH HOH ? . D 4 HOH 77 777 777 HOH HOH ? . D 4 HOH 78 778 778 HOH HOH ? . D 4 HOH 79 779 779 HOH HOH ? . D 4 HOH 80 780 780 HOH HOH ? . D 4 HOH 81 781 781 HOH HOH ? . D 4 HOH 82 782 782 HOH HOH ? . D 4 HOH 83 783 783 HOH HOH ? . D 4 HOH 84 784 784 HOH HOH ? . D 4 HOH 85 785 785 HOH HOH ? . D 4 HOH 86 786 786 HOH HOH ? . D 4 HOH 87 787 787 HOH HOH ? . D 4 HOH 88 788 788 HOH HOH ? . D 4 HOH 89 789 789 HOH HOH ? . D 4 HOH 90 790 790 HOH HOH ? . D 4 HOH 91 791 791 HOH HOH ? . D 4 HOH 92 792 792 HOH HOH ? . D 4 HOH 93 793 793 HOH HOH ? . D 4 HOH 94 794 794 HOH HOH ? . D 4 HOH 95 795 795 HOH HOH ? . D 4 HOH 96 796 796 HOH HOH ? . D 4 HOH 97 797 797 HOH HOH ? . D 4 HOH 98 798 798 HOH HOH ? . D 4 HOH 99 799 799 HOH HOH ? . D 4 HOH 100 800 800 HOH HOH ? . D 4 HOH 101 801 801 HOH HOH ? . D 4 HOH 102 802 802 HOH HOH ? . D 4 HOH 103 803 803 HOH HOH ? . D 4 HOH 104 804 804 HOH HOH ? . D 4 HOH 105 805 805 HOH HOH ? . D 4 HOH 106 806 806 HOH HOH ? . D 4 HOH 107 807 807 HOH HOH ? . D 4 HOH 108 808 808 HOH HOH ? . D 4 HOH 109 809 809 HOH HOH ? . D 4 HOH 110 810 810 HOH HOH ? . D 4 HOH 111 811 811 HOH HOH ? . D 4 HOH 112 812 812 HOH HOH ? . D 4 HOH 113 813 813 HOH HOH ? . D 4 HOH 114 814 814 HOH HOH ? . D 4 HOH 115 815 815 HOH HOH ? . D 4 HOH 116 816 816 HOH HOH ? . D 4 HOH 117 817 817 HOH HOH ? . D 4 HOH 118 818 818 HOH HOH ? . D 4 HOH 119 819 819 HOH HOH ? . D 4 HOH 120 820 820 HOH HOH ? . D 4 HOH 121 821 821 HOH HOH ? . D 4 HOH 122 822 822 HOH HOH ? . D 4 HOH 123 823 823 HOH HOH ? . D 4 HOH 124 824 824 HOH HOH ? . D 4 HOH 125 825 825 HOH HOH ? . D 4 HOH 126 826 826 HOH HOH ? . D 4 HOH 127 827 827 HOH HOH ? . D 4 HOH 128 828 828 HOH HOH ? . D 4 HOH 129 829 829 HOH HOH ? . D 4 HOH 130 830 830 HOH HOH ? . D 4 HOH 131 831 831 HOH HOH ? . D 4 HOH 132 832 832 HOH HOH ? . D 4 HOH 133 833 833 HOH HOH ? . D 4 HOH 134 834 834 HOH HOH ? . D 4 HOH 135 835 835 HOH HOH ? . D 4 HOH 136 836 836 HOH HOH ? . D 4 HOH 137 837 837 HOH HOH ? . D 4 HOH 138 838 838 HOH HOH ? . D 4 HOH 139 839 839 HOH HOH ? . D 4 HOH 140 840 840 HOH HOH ? . D 4 HOH 141 841 841 HOH HOH ? . D 4 HOH 142 842 842 HOH HOH ? . D 4 HOH 143 843 843 HOH HOH ? . D 4 HOH 144 844 844 HOH HOH ? . D 4 HOH 145 845 845 HOH HOH ? . D 4 HOH 146 846 846 HOH HOH ? . D 4 HOH 147 847 847 HOH HOH ? . D 4 HOH 148 848 848 HOH HOH ? . D 4 HOH 149 849 849 HOH HOH ? . D 4 HOH 150 850 850 HOH HOH ? . D 4 HOH 151 851 851 HOH HOH ? . D 4 HOH 152 852 852 HOH HOH ? . D 4 HOH 153 853 853 HOH HOH ? . D 4 HOH 154 854 854 HOH HOH ? . D 4 HOH 155 855 855 HOH HOH ? . D 4 HOH 156 856 856 HOH HOH ? . D 4 HOH 157 857 857 HOH HOH ? . D 4 HOH 158 858 858 HOH HOH ? . D 4 HOH 159 859 859 HOH HOH ? . D 4 HOH 160 860 860 HOH HOH ? . D 4 HOH 161 861 861 HOH HOH ? . D 4 HOH 162 862 862 HOH HOH ? . D 4 HOH 163 863 863 HOH HOH ? . D 4 HOH 164 864 864 HOH HOH ? . D 4 HOH 165 865 865 HOH HOH ? . D 4 HOH 166 866 866 HOH HOH ? . D 4 HOH 167 867 867 HOH HOH ? . D 4 HOH 168 868 868 HOH HOH ? . D 4 HOH 169 869 869 HOH HOH ? . D 4 HOH 170 870 870 HOH HOH ? . D 4 HOH 171 871 871 HOH HOH ? . D 4 HOH 172 872 872 HOH HOH ? . D 4 HOH 173 873 873 HOH HOH ? . D 4 HOH 174 874 874 HOH HOH ? . D 4 HOH 175 875 875 HOH HOH ? . D 4 HOH 176 876 876 HOH HOH ? . D 4 HOH 177 877 877 HOH HOH ? . D 4 HOH 178 878 878 HOH HOH ? . D 4 HOH 179 879 879 HOH HOH ? . D 4 HOH 180 880 880 HOH HOH ? . D 4 HOH 181 881 881 HOH HOH ? . D 4 HOH 182 882 882 HOH HOH ? . D 4 HOH 183 883 883 HOH HOH ? . D 4 HOH 184 884 884 HOH HOH ? . D 4 HOH 185 885 885 HOH HOH ? . D 4 HOH 186 886 886 HOH HOH ? . D 4 HOH 187 887 887 HOH HOH ? . D 4 HOH 188 888 888 HOH HOH ? . D 4 HOH 189 889 889 HOH HOH ? . D 4 HOH 190 890 890 HOH HOH ? . D 4 HOH 191 891 891 HOH HOH ? . D 4 HOH 192 892 892 HOH HOH ? . D 4 HOH 193 893 893 HOH HOH ? . D 4 HOH 194 894 894 HOH HOH ? . D 4 HOH 195 895 895 HOH HOH ? . D 4 HOH 196 896 896 HOH HOH ? . D 4 HOH 197 897 897 HOH HOH ? . D 4 HOH 198 898 898 HOH HOH ? . D 4 HOH 199 899 899 HOH HOH ? . D 4 HOH 200 900 900 HOH HOH ? . D 4 HOH 201 901 901 HOH HOH ? . D 4 HOH 202 902 902 HOH HOH ? . D 4 HOH 203 903 903 HOH HOH ? . D 4 HOH 204 904 904 HOH HOH ? . D 4 HOH 205 905 905 HOH HOH ? . D 4 HOH 206 906 906 HOH HOH ? . D 4 HOH 207 907 907 HOH HOH ? . D 4 HOH 208 908 908 HOH HOH ? . D 4 HOH 209 909 909 HOH HOH ? . D 4 HOH 210 910 910 HOH HOH ? . D 4 HOH 211 911 911 HOH HOH ? . D 4 HOH 212 912 912 HOH HOH ? . D 4 HOH 213 913 913 HOH HOH ? . D 4 HOH 214 914 914 HOH HOH ? . D 4 HOH 215 915 915 HOH HOH ? . D 4 HOH 216 916 916 HOH HOH ? . D 4 HOH 217 917 917 HOH HOH ? . D 4 HOH 218 918 918 HOH HOH ? . D 4 HOH 219 919 919 HOH HOH ? . D 4 HOH 220 920 920 HOH HOH ? . D 4 HOH 221 921 921 HOH HOH ? . D 4 HOH 222 922 922 HOH HOH ? . D 4 HOH 223 923 923 HOH HOH ? . D 4 HOH 224 924 924 HOH HOH ? . D 4 HOH 225 925 925 HOH HOH ? . D 4 HOH 226 926 926 HOH HOH ? . D 4 HOH 227 927 927 HOH HOH ? . D 4 HOH 228 928 928 HOH HOH ? . D 4 HOH 229 929 929 HOH HOH ? . D 4 HOH 230 930 930 HOH HOH ? . D 4 HOH 231 931 931 HOH HOH ? . D 4 HOH 232 932 932 HOH HOH ? . D 4 HOH 233 933 933 HOH HOH ? . D 4 HOH 234 934 934 HOH HOH ? . D 4 HOH 235 935 935 HOH HOH ? . D 4 HOH 236 936 936 HOH HOH ? . D 4 HOH 237 937 937 HOH HOH ? . D 4 HOH 238 938 938 HOH HOH ? . D 4 HOH 239 939 939 HOH HOH ? . D 4 HOH 240 940 940 HOH HOH ? . D 4 HOH 241 941 941 HOH HOH ? . D 4 HOH 242 942 942 HOH HOH ? . D 4 HOH 243 943 943 HOH HOH ? . D 4 HOH 244 944 944 HOH HOH ? . D 4 HOH 245 945 945 HOH HOH ? . D 4 HOH 246 946 946 HOH HOH ? . D 4 HOH 247 947 947 HOH HOH ? . D 4 HOH 248 948 948 HOH HOH ? . D 4 HOH 249 950 950 HOH HOH ? . D 4 HOH 250 951 951 HOH HOH ? . D 4 HOH 251 952 952 HOH HOH ? . D 4 HOH 252 953 953 HOH HOH ? . D 4 HOH 253 954 954 HOH HOH ? . D 4 HOH 254 955 955 HOH HOH ? . D 4 HOH 255 956 956 HOH HOH ? . D 4 HOH 256 957 957 HOH HOH ? . D 4 HOH 257 959 959 HOH HOH ? . D 4 HOH 258 960 960 HOH HOH ? . D 4 HOH 259 961 961 HOH HOH ? . D 4 HOH 260 962 962 HOH HOH ? . D 4 HOH 261 963 963 HOH HOH ? . D 4 HOH 262 964 964 HOH HOH ? . D 4 HOH 263 965 965 HOH HOH ? . D 4 HOH 264 966 966 HOH HOH ? . D 4 HOH 265 967 967 HOH HOH ? . D 4 HOH 266 968 968 HOH HOH ? . D 4 HOH 267 969 969 HOH HOH ? . D 4 HOH 268 970 970 HOH HOH ? . D 4 HOH 269 971 971 HOH HOH ? . D 4 HOH 270 972 972 HOH HOH ? . D 4 HOH 271 973 973 HOH HOH ? . D 4 HOH 272 974 974 HOH HOH ? . D 4 HOH 273 975 975 HOH HOH ? . D 4 HOH 274 976 976 HOH HOH ? . D 4 HOH 275 977 977 HOH HOH ? . D 4 HOH 276 978 978 HOH HOH ? . D 4 HOH 277 979 979 HOH HOH ? . D 4 HOH 278 980 980 HOH HOH ? . # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 . HOH 753 ? D HOH . 2 1 . HOH 814 ? D HOH . 3 1 . HOH 874 ? D HOH . 4 1 . HOH 980 ? D HOH . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id NE2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id HIS _pdbx_struct_conn_angle.ptnr1_label_seq_id 59 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id X _pdbx_struct_conn_angle.ptnr1_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr1_auth_seq_id 59 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id FE _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id C _pdbx_struct_conn_angle.ptnr2_label_comp_id FDD _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id X _pdbx_struct_conn_angle.ptnr2_auth_comp_id FDD _pdbx_struct_conn_angle.ptnr2_auth_seq_id 185 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id N _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id B _pdbx_struct_conn_angle.ptnr3_label_comp_id NH4 _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id X _pdbx_struct_conn_angle.ptnr3_auth_comp_id NH4 _pdbx_struct_conn_angle.ptnr3_auth_seq_id 700 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 178.1 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-22 2 'Structure model' 1 1 2008-03-04 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal d*TREK 7.2SSIbeta 'Aug 7 2001' package 'Pflugrath, J.W.' jwp@RigakuMSC.com 'data processing' http://www.msc.com/protein/dtrek.html ? ? 1 REFMAC5 . ? ? 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 2 PDB_EXTRACT 1.700 'May. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 CrystalClear 'V. 1.3.6 D*TREK (MSC/RIGAKU)' ? ? ? ? 'data scaling' ? ? ? 4 REFMAC 5.2.0005 ? ? ? ? refinement ? ? ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE X 18 ? ? -93.53 56.45 2 1 GLU X 32 ? ? -113.34 76.00 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'AMMONIUM ION' NH4 3 'FE(III) 2,4-DIMETHYL DEUTEROPORPHYRIN IX' FDD 4 water HOH #