HEADER TRANSFERASE/DNA BINDING PROTEIN 25-AUG-05 2ATQ TITLE RB69 SINGLE-STRANDED DNA BINDING PROTEIN-DNA POLYMERASE FUSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GP43; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: C-TERMINUS IS FUSED TO A LINKER NOT SEEN IN THE COMPND 9 DENSITY; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: GP32; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: RB69 SINGLE-STRANDED DNA BINDING PROTEIN; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: N-TERMINUS IS FUSED TO A LINKER NOT SEEN IN THE COMPND 16 DENSITY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE RB69; SOURCE 3 ORGANISM_TAXID: 12353; SOURCE 4 GENE: 43; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET101; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE RB69; SOURCE 12 ORGANISM_TAXID: 12353; SOURCE 13 GENE: GP32; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET101 KEYWDS DNA POLYMERASE, PALM DOMAIN, FINGERS DOMAIN, THUMB DOMAIN, SINGLE- KEYWDS 2 STRANDED DNA BINDING PROTEIN, OB-FOLD, TRANSFERASE-DNA BINDING KEYWDS 3 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.SUN,L.GENG,Y.SHAMOO REVDAT 6 23-AUG-23 2ATQ 1 REMARK REVDAT 5 20-OCT-21 2ATQ 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 2ATQ 1 REMARK REVDAT 3 24-FEB-09 2ATQ 1 VERSN REVDAT 2 29-AUG-06 2ATQ 1 JRNL REVDAT 1 09-MAY-06 2ATQ 0 JRNL AUTH S.SUN,L.GENG,Y.SHAMOO JRNL TITL STRUCTURE AND ENZYMATIC PROPERTIES OF A CHIMERIC JRNL TITL 2 BACTERIOPHAGE RB69 DNA POLYMERASE AND SINGLE-STRANDED DNA JRNL TITL 3 BINDING PROTEIN WITH INCREASED PROCESSIVITY. JRNL REF PROTEINS V. 65 231 2006 JRNL REFN ISSN 0887-3585 JRNL PMID 16881051 JRNL DOI 10.1002/PROT.21088 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 29505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.284 REMARK 3 FREE R VALUE : 0.345 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1492 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3197 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 178 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8607 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 14.01000 REMARK 3 B22 (A**2) : 14.01000 REMARK 3 B33 (A**2) : -28.03000 REMARK 3 B12 (A**2) : 18.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.53 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.52 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.60 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.22 REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ATQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33922 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.64600 REMARK 200 R SYM FOR SHELL (I) : 0.64600 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: DM 5.0, SHARP REMARK 200 STARTING MODEL: PDB ENTRY 1IH7, 2A1K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, TRIS-CL, 6-AMINOCAPROIC ACID, REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.78000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.39000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.58500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 14.19500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.97500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 791 REMARK 465 ASP A 792 REMARK 465 VAL A 793 REMARK 465 GLY A 794 REMARK 465 GLY A 795 REMARK 465 PHE A 796 REMARK 465 PRO A 797 REMARK 465 GLY A 798 REMARK 465 PRO A 799 REMARK 465 LYS A 800 REMARK 465 CYS A 801 REMARK 465 PRO A 802 REMARK 465 PHE A 803 REMARK 465 HIS A 804 REMARK 465 ILE A 805 REMARK 465 ARG A 806 REMARK 465 GLY A 807 REMARK 465 ILE A 808 REMARK 465 LEU A 809 REMARK 465 THR A 810 REMARK 465 TYR A 811 REMARK 465 ASN A 812 REMARK 465 ARG A 813 REMARK 465 ALA A 814 REMARK 465 ILE A 815 REMARK 465 LYS A 816 REMARK 465 GLY A 817 REMARK 465 ASN A 818 REMARK 465 ILE A 819 REMARK 465 ASP A 820 REMARK 465 ALA A 821 REMARK 465 PRO A 822 REMARK 465 GLN A 823 REMARK 465 VAL A 824 REMARK 465 VAL A 825 REMARK 465 GLU A 826 REMARK 465 GLY A 827 REMARK 465 GLU A 828 REMARK 465 LYS A 829 REMARK 465 VAL A 830 REMARK 465 TYR A 831 REMARK 465 VAL A 832 REMARK 465 LEU A 833 REMARK 465 PRO A 834 REMARK 465 LEU A 835 REMARK 465 ARG A 836 REMARK 465 GLU A 837 REMARK 465 GLY A 838 REMARK 465 ASN A 839 REMARK 465 PRO A 840 REMARK 465 PHE A 841 REMARK 465 GLY A 842 REMARK 465 ASP A 843 REMARK 465 LYS A 844 REMARK 465 CYS A 845 REMARK 465 ILE A 846 REMARK 465 ALA A 847 REMARK 465 TRP A 848 REMARK 465 MET B 20 REMARK 465 LYS B 21 REMARK 465 GLY B 22 REMARK 465 PHE B 23 REMARK 465 SER B 24 REMARK 465 SER B 25 REMARK 465 GLU B 26 REMARK 465 ASP B 27 REMARK 465 LYS B 28 REMARK 465 GLY B 29 REMARK 465 GLU B 30 REMARK 465 TRP B 31 REMARK 465 ALA B 242 REMARK 465 ALA B 243 REMARK 465 LEU B 244 REMARK 465 GLY B 245 REMARK 465 GLY B 246 REMARK 465 ALA B 247 REMARK 465 ALA B 248 REMARK 465 ALA B 249 REMARK 465 ALA B 250 REMARK 465 ALA B 251 REMARK 465 ALA B 252 REMARK 465 SER B 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 94 OD1 ASP B 97 1.62 REMARK 500 O ARG A 751 O GLN A 754 1.65 REMARK 500 O THR A 852 N ILE A 854 1.71 REMARK 500 O ALA A 168 CA GLY A 175 1.74 REMARK 500 CB ALA B 59 CG LEU B 216 1.80 REMARK 500 N ALA B 59 CD2 LEU B 216 1.83 REMARK 500 CG MET B 150 CZ PHE B 191 1.88 REMARK 500 CB ALA B 171 CD1 PHE B 191 1.94 REMARK 500 SD MET B 150 CZ PHE B 191 1.95 REMARK 500 O HIS A 245 N LYS A 247 2.03 REMARK 500 CD LYS B 67 NE1 TRP B 72 2.04 REMARK 500 CG2 THR A 214 O LEU A 271 2.09 REMARK 500 CB ALA B 59 CD2 LEU B 216 2.09 REMARK 500 CE1 PHE A 146 CE LYS A 185 2.10 REMARK 500 CG MET B 150 CE2 PHE B 191 2.15 REMARK 500 CE LYS A 169 NH2 ARG A 319 2.16 REMARK 500 O LYS A 130 CD PRO A 132 2.18 REMARK 500 OE1 GLU A 17 OH TYR A 92 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 849 CA - N - CD ANGL. DEV. = -10.4 DEGREES REMARK 500 PRO B 167 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 LEU B 216 C - N - CA ANGL. DEV. = 18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 126.04 -22.50 REMARK 500 LEU A 6 -56.77 -124.30 REMARK 500 PHE A 16 78.83 -118.61 REMARK 500 GLU A 17 -174.44 -66.57 REMARK 500 ARG A 18 104.65 -179.22 REMARK 500 ASP A 21 -159.08 -83.79 REMARK 500 THR A 28 49.09 -159.47 REMARK 500 ARG A 29 166.30 -49.30 REMARK 500 GLU A 32 79.73 -68.31 REMARK 500 GLU A 43 13.72 -66.68 REMARK 500 ALA A 46 123.27 -13.30 REMARK 500 THR A 47 -128.13 -119.67 REMARK 500 ASN A 98 52.43 -62.78 REMARK 500 PRO A 124 177.52 -55.75 REMARK 500 SER A 127 22.37 88.75 REMARK 500 ALA A 129 -113.49 -63.45 REMARK 500 LYS A 130 31.93 36.73 REMARK 500 ILE A 133 73.79 21.09 REMARK 500 SER A 141 -12.17 -47.50 REMARK 500 SER A 154 -151.10 164.20 REMARK 500 ASN A 158 -180.00 -178.99 REMARK 500 VAL A 159 -165.85 72.47 REMARK 500 GLU A 160 86.07 17.20 REMARK 500 TRP A 162 146.40 -32.50 REMARK 500 ALA A 167 80.75 -64.39 REMARK 500 ALA A 168 79.13 26.33 REMARK 500 LYS A 169 -147.40 84.37 REMARK 500 LEU A 170 153.81 155.01 REMARK 500 GLU A 172 -142.96 -149.52 REMARK 500 ASP A 176 11.11 55.08 REMARK 500 VAL A 178 -62.90 -28.52 REMARK 500 PRO A 179 31.95 -71.08 REMARK 500 SER A 180 -67.34 -13.88 REMARK 500 ILE A 182 109.28 42.57 REMARK 500 ASP A 192 58.29 91.92 REMARK 500 ASN A 193 172.53 155.86 REMARK 500 PHE A 221 -78.30 -106.01 REMARK 500 ALA A 222 -86.57 -44.54 REMARK 500 VAL A 226 -3.66 -53.63 REMARK 500 ARG A 229 -75.10 -48.07 REMARK 500 THR A 238 51.18 -95.28 REMARK 500 ALA A 239 -19.59 -143.46 REMARK 500 PRO A 244 5.99 -60.54 REMARK 500 ARG A 246 -25.13 50.67 REMARK 500 ASN A 255 -145.69 -117.08 REMARK 500 MET A 256 -82.09 -76.81 REMARK 500 ARG A 260 -155.54 -120.02 REMARK 500 ASP A 272 99.54 -57.22 REMARK 500 THR A 283 -47.90 -147.75 REMARK 500 ASN A 284 73.99 56.33 REMARK 500 REMARK 500 THIS ENTRY HAS 170 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 64 NE2 REMARK 620 2 CYS B 77 SG 106.3 REMARK 620 3 CYS B 87 SG 108.0 102.9 REMARK 620 4 CYS B 90 SG 122.2 103.8 111.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 999 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE C-TERMINUS OF RB69 SINGLE-STRANDED DNA REMARK 999 BINDING PROTEIN CORE DOMAIN IS FUSED TO THE REMARK 999 N-TERMINUS OF DNA POLYMERASE THROUGH A LINKER REMARK 999 CONSISTING OF GTGSGT. THE LINKER WAS NOT REMARK 999 OBSERVED IN THE DENSITY. DBREF 2ATQ A 1 903 UNP Q38087 DPOL_BPR69 1 903 DBREF 2ATQ B 21 253 UNP Q7Y265 Q7Y265_BPR69 21 253 SEQADV 2ATQ ALA A 222 UNP Q38087 ASP 222 ENGINEERED MUTATION SEQADV 2ATQ ALA A 327 UNP Q38087 ASP 327 ENGINEERED MUTATION SEQADV 2ATQ MET B 20 UNP Q7Y265 INITIATING METHIONINE SEQRES 1 A 903 MET LYS GLU PHE TYR LEU THR VAL GLU GLN ILE GLY ASP SEQRES 2 A 903 SER ILE PHE GLU ARG TYR ILE ASP SER ASN GLY ARG GLU SEQRES 3 A 903 ARG THR ARG GLU VAL GLU TYR LYS PRO SER LEU PHE ALA SEQRES 4 A 903 HIS CYS PRO GLU SER GLN ALA THR LYS TYR PHE ASP ILE SEQRES 5 A 903 TYR GLY LYS PRO CYS THR ARG LYS LEU PHE ALA ASN MET SEQRES 6 A 903 ARG ASP ALA SER GLN TRP ILE LYS ARG MET GLU ASP ILE SEQRES 7 A 903 GLY LEU GLU ALA LEU GLY MET ASP ASP PHE LYS LEU ALA SEQRES 8 A 903 TYR LEU SER ASP THR TYR ASN TYR GLU ILE LYS TYR ASP SEQRES 9 A 903 HIS THR LYS ILE ARG VAL ALA ASN PHE ASP ILE GLU VAL SEQRES 10 A 903 THR SER PRO ASP GLY PHE PRO GLU PRO SER GLN ALA LYS SEQRES 11 A 903 HIS PRO ILE ASP ALA ILE THR HIS TYR ASP SER ILE ASP SEQRES 12 A 903 ASP ARG PHE TYR VAL PHE ASP LEU LEU ASN SER PRO TYR SEQRES 13 A 903 GLY ASN VAL GLU GLU TRP SER ILE GLU ILE ALA ALA LYS SEQRES 14 A 903 LEU GLN GLU GLN GLY GLY ASP GLU VAL PRO SER GLU ILE SEQRES 15 A 903 ILE ASP LYS ILE ILE TYR MET PRO PHE ASP ASN GLU LYS SEQRES 16 A 903 GLU LEU LEU MET GLU TYR LEU ASN PHE TRP GLN GLN LYS SEQRES 17 A 903 THR PRO VAL ILE LEU THR GLY TRP ASN VAL GLU SER PHE SEQRES 18 A 903 ALA ILE PRO TYR VAL TYR ASN ARG ILE LYS ASN ILE PHE SEQRES 19 A 903 GLY GLU SER THR ALA LYS ARG LEU SER PRO HIS ARG LYS SEQRES 20 A 903 THR ARG VAL LYS VAL ILE GLU ASN MET TYR GLY SER ARG SEQRES 21 A 903 GLU ILE ILE THR LEU PHE GLY ILE SER VAL LEU ASP TYR SEQRES 22 A 903 ILE ASP LEU TYR LYS LYS PHE SER PHE THR ASN GLN PRO SEQRES 23 A 903 SER TYR SER LEU ASP TYR ILE SER GLU PHE GLU LEU ASN SEQRES 24 A 903 VAL GLY LYS LEU LYS TYR ASP GLY PRO ILE SER LYS LEU SEQRES 25 A 903 ARG GLU SER ASN HIS GLN ARG TYR ILE SER TYR ASN ILE SEQRES 26 A 903 ILE ALA VAL TYR ARG VAL LEU GLN ILE ASP ALA LYS ARG SEQRES 27 A 903 GLN PHE ILE ASN LEU SER LEU ASP MET GLY TYR TYR ALA SEQRES 28 A 903 LYS ILE GLN ILE GLN SER VAL PHE SER PRO ILE LYS THR SEQRES 29 A 903 TRP ASP ALA ILE ILE PHE ASN SER LEU LYS GLU GLN ASN SEQRES 30 A 903 LYS VAL ILE PRO GLN GLY ARG SER HIS PRO VAL GLN PRO SEQRES 31 A 903 TYR PRO GLY ALA PHE VAL LYS GLU PRO ILE PRO ASN ARG SEQRES 32 A 903 TYR LYS TYR VAL MET SER PHE ASP LEU THR SER LEU TYR SEQRES 33 A 903 PRO SER ILE ILE ARG GLN VAL ASN ILE SER PRO GLU THR SEQRES 34 A 903 ILE ALA GLY THR PHE LYS VAL ALA PRO LEU HIS ASP TYR SEQRES 35 A 903 ILE ASN ALA VAL ALA GLU ARG PRO SER ASP VAL TYR SER SEQRES 36 A 903 CYS SER PRO ASN GLY MET MET TYR TYR LYS ASP ARG ASP SEQRES 37 A 903 GLY VAL VAL PRO THR GLU ILE THR LYS VAL PHE ASN GLN SEQRES 38 A 903 ARG LYS GLU HIS LYS GLY TYR MET LEU ALA ALA GLN ARG SEQRES 39 A 903 ASN GLY GLU ILE ILE LYS GLU ALA LEU HIS ASN PRO ASN SEQRES 40 A 903 LEU SER VAL ASP GLU PRO LEU ASP VAL ASP TYR ARG PHE SEQRES 41 A 903 ASP PHE SER ASP GLU ILE LYS GLU LYS ILE LYS LYS LEU SEQRES 42 A 903 SER ALA LYS SER LEU ASN GLU MET LEU PHE ARG ALA GLN SEQRES 43 A 903 ARG THR GLU VAL ALA GLY MET THR ALA GLN ILE ASN ARG SEQRES 44 A 903 LYS LEU LEU ILE ASN SER LEU TYR GLY ALA LEU GLY ASN SEQRES 45 A 903 VAL TRP PHE ARG TYR TYR ASP LEU ARG ASN ALA THR ALA SEQRES 46 A 903 ILE THR THR PHE GLY GLN MET ALA LEU GLN TRP ILE GLU SEQRES 47 A 903 ARG LYS VAL ASN GLU TYR LEU ASN GLU VAL CYS GLY THR SEQRES 48 A 903 GLU GLY GLU ALA PHE VAL LEU TYR GLY ASP THR ASP SER SEQRES 49 A 903 ILE TYR VAL SER ALA ASP LYS ILE ILE ASP LYS VAL GLY SEQRES 50 A 903 GLU SER LYS PHE ARG ASP THR ASN HIS TRP VAL ASP PHE SEQRES 51 A 903 LEU ASP LYS PHE ALA ARG GLU ARG MET GLU PRO ALA ILE SEQRES 52 A 903 ASP ARG GLY PHE ARG GLU MET CYS GLU TYR MET ASN ASN SEQRES 53 A 903 LYS GLN HIS LEU MET PHE MET ASP ARG GLU ALA ILE ALA SEQRES 54 A 903 GLY PRO PRO LEU GLY SER LYS GLY ILE GLY GLY PHE TRP SEQRES 55 A 903 THR GLY LYS LYS ARG TYR ALA LEU ASN VAL TRP ASP MET SEQRES 56 A 903 GLU GLY THR ARG TYR ALA GLU PRO LYS LEU LYS ILE MET SEQRES 57 A 903 GLY LEU GLU THR GLN LYS SER SER THR PRO LYS ALA VAL SEQRES 58 A 903 GLN LYS ALA LEU LYS GLU CYS ILE ARG ARG MET LEU GLN SEQRES 59 A 903 GLU GLY GLU GLU SER LEU GLN GLU TYR PHE LYS GLU PHE SEQRES 60 A 903 GLU LYS GLU PHE ARG GLN LEU ASN TYR ILE SER ILE ALA SEQRES 61 A 903 SER VAL SER SER ALA ASN ASN ILE ALA LYS TYR ASP VAL SEQRES 62 A 903 GLY GLY PHE PRO GLY PRO LYS CYS PRO PHE HIS ILE ARG SEQRES 63 A 903 GLY ILE LEU THR TYR ASN ARG ALA ILE LYS GLY ASN ILE SEQRES 64 A 903 ASP ALA PRO GLN VAL VAL GLU GLY GLU LYS VAL TYR VAL SEQRES 65 A 903 LEU PRO LEU ARG GLU GLY ASN PRO PHE GLY ASP LYS CYS SEQRES 66 A 903 ILE ALA TRP PRO SER GLY THR GLU ILE THR ASP LEU ILE SEQRES 67 A 903 LYS ASP ASP VAL LEU HIS TRP MET ASP TYR THR VAL LEU SEQRES 68 A 903 LEU GLU LYS THR PHE ILE LYS PRO LEU GLU GLY PHE THR SEQRES 69 A 903 SER ALA ALA LYS LEU ASP TYR GLU LYS LYS ALA SER LEU SEQRES 70 A 903 PHE ASP MET PHE ASP PHE SEQRES 1 B 234 MET LYS GLY PHE SER SER GLU ASP LYS GLY GLU TRP LYS SEQRES 2 B 234 LEU LYS LEU ASP ALA SER GLY ASN GLY GLN ALA VAL ILE SEQRES 3 B 234 ARG PHE LEU PRO ALA LYS THR ASP ASP ALA LEU PRO PHE SEQRES 4 B 234 ALA ILE LEU VAL ASN HIS GLY PHE LYS LYS ASN GLY LYS SEQRES 5 B 234 TRP TYR ILE GLU THR CYS SER SER THR HIS GLY ASP TYR SEQRES 6 B 234 ASP SER CYS PRO VAL CYS GLN TYR ILE SER LYS ASN ASP SEQRES 7 B 234 LEU TYR ASN THR ASN LYS THR GLU TYR SER GLN LEU LYS SEQRES 8 B 234 ARG LYS THR SER TYR TRP ALA ASN ILE LEU VAL VAL LYS SEQRES 9 B 234 ASP PRO GLN ALA PRO ASP ASN GLU GLY LYS VAL PHE LYS SEQRES 10 B 234 TYR ARG PHE GLY LYS LYS ILE TRP ASP LYS ILE ASN ALA SEQRES 11 B 234 MET ILE ALA VAL ASP THR GLU MET GLY GLU THR PRO VAL SEQRES 12 B 234 ASP VAL THR CYS PRO TRP GLU GLY ALA ASN PHE VAL LEU SEQRES 13 B 234 LYS VAL LYS GLN VAL SER GLY PHE SER ASN TYR ASP GLU SEQRES 14 B 234 SER LYS PHE LEU ASN GLN SER ALA ILE PRO ASN ILE ASP SEQRES 15 B 234 ASP GLU SER PHE GLN LYS GLU LEU PHE GLU GLN MET VAL SEQRES 16 B 234 ASP LEU SER GLU MET THR SER LYS ASP LYS PHE LYS SER SEQRES 17 B 234 PHE GLU GLU LEU ASN THR LYS PHE ASN GLN VAL LEU GLY SEQRES 18 B 234 THR ALA ALA LEU GLY GLY ALA ALA ALA ALA ALA ALA SER HET GDP A 999 28 HET ZN B 1 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 ZN ZN 2+ HELIX 1 1 ASN A 64 GLY A 79 1 16 HELIX 2 2 ASP A 87 TYR A 97 1 11 HELIX 3 3 MET A 199 LYS A 208 1 10 HELIX 4 4 ILE A 223 GLY A 235 1 13 HELIX 5 5 GLU A 236 SER A 243 5 8 HELIX 6 6 ASP A 272 SER A 281 1 10 HELIX 7 7 TYR A 292 LEU A 298 1 7 HELIX 8 8 LYS A 311 ASN A 316 1 6 HELIX 9 9 ILE A 325 ILE A 326 5 2 HELIX 10 10 VAL A 328 VAL A 328 5 1 HELIX 11 11 TYR A 329 GLN A 339 1 11 HELIX 12 12 GLN A 339 LYS A 352 1 14 HELIX 13 13 GLN A 354 VAL A 358 5 5 HELIX 14 14 SER A 360 GLN A 376 1 17 HELIX 15 15 SER A 414 ASN A 424 1 11 HELIX 16 16 PRO A 438 ASN A 444 1 7 HELIX 17 17 GLY A 469 ALA A 502 1 34 HELIX 18 18 SER A 523 LEU A 533 1 11 HELIX 19 19 SER A 534 LEU A 566 1 33 HELIX 20 20 LEU A 566 GLY A 571 1 6 HELIX 21 21 ASP A 579 CYS A 609 1 31 HELIX 22 22 ALA A 629 LYS A 635 1 7 HELIX 23 23 ASP A 643 PHE A 654 1 12 HELIX 24 24 ARG A 658 MET A 674 1 17 HELIX 25 25 PRO A 738 GLN A 754 1 17 HELIX 26 26 GLU A 755 GLN A 773 1 19 HELIX 27 27 ILE A 858 LEU A 863 1 6 HELIX 28 28 PHE A 876 LYS A 888 1 13 HELIX 29 29 LEU A 897 ASP A 902 5 6 HELIX 30 30 SER B 78 HIS B 81 5 4 HELIX 31 31 CYS B 87 ASN B 96 1 10 HELIX 32 32 ASN B 102 LYS B 110 1 9 HELIX 33 33 ALA B 127 GLU B 131 5 5 HELIX 34 34 GLY B 140 ALA B 149 1 10 HELIX 35 35 GLU B 203 GLU B 211 1 9 HELIX 36 36 PHE B 228 ASN B 236 1 9 SHEET 1 A 2 PHE A 4 TYR A 5 0 SHEET 2 A 2 TYR A 19 ILE A 20 -1 O ILE A 20 N PHE A 4 SHEET 1 B 2 SER A 36 HIS A 40 0 SHEET 2 B 2 CYS A 57 LEU A 61 -1 O THR A 58 N ALA A 39 SHEET 1 C 2 PHE A 50 ASP A 51 0 SHEET 2 C 2 LYS A 378 VAL A 379 1 O VAL A 379 N PHE A 50 SHEET 1 D 2 VAL A 110 ALA A 111 0 SHEET 2 D 2 ILE A 212 LEU A 213 1 O ILE A 212 N ALA A 111 SHEET 1 E 3 ASP A 114 GLU A 116 0 SHEET 2 E 3 ALA A 135 TYR A 139 -1 O ALA A 135 N GLU A 116 SHEET 3 E 3 PHE A 146 PHE A 149 -1 O TYR A 147 N HIS A 138 SHEET 1 F 2 THR A 248 LYS A 251 0 SHEET 2 F 2 ILE A 262 LEU A 265 -1 O THR A 264 N ARG A 249 SHEET 1 G 7 ASN A 402 TYR A 404 0 SHEET 2 G 7 GLY A 700 GLY A 704 -1 O GLY A 700 N TYR A 404 SHEET 3 G 7 ARG A 707 MET A 715 -1 O ARG A 707 N THR A 703 SHEET 4 G 7 MET A 683 ALA A 689 -1 N ILE A 688 O TRP A 713 SHEET 5 G 7 VAL A 407 LEU A 412 -1 N SER A 409 O GLU A 686 SHEET 6 G 7 SER A 624 SER A 628 -1 O VAL A 627 N MET A 408 SHEET 7 G 7 VAL A 617 ASP A 621 -1 N ASP A 621 O SER A 624 SHEET 1 H 4 ASN A 402 TYR A 404 0 SHEET 2 H 4 GLY A 700 GLY A 704 -1 O GLY A 700 N TYR A 404 SHEET 3 H 4 ARG A 707 MET A 715 -1 O ARG A 707 N THR A 703 SHEET 4 H 4 THR A 718 MET A 728 -1 O LYS A 724 N VAL A 712 SHEET 1 I 3 ILE A 430 THR A 433 0 SHEET 2 I 3 MET A 461 TYR A 463 -1 O MET A 462 N ALA A 431 SHEET 3 I 3 SER A 455 CYS A 456 -1 N SER A 455 O TYR A 463 SHEET 1 J 4 VAL B 134 PHE B 139 0 SHEET 2 J 4 TYR B 115 LYS B 123 -1 N ILE B 119 O PHE B 135 SHEET 3 J 4 GLY B 41 PHE B 47 -1 N VAL B 44 O VAL B 122 SHEET 4 J 4 PHE B 173 VAL B 177 -1 O PHE B 173 N ILE B 45 SHEET 1 K 3 THR B 76 CYS B 77 0 SHEET 2 K 3 VAL B 62 ASN B 63 -1 N VAL B 62 O CYS B 77 SHEET 3 K 3 LYS B 112 THR B 113 -1 O LYS B 112 N ASN B 63 SHEET 1 L 2 PHE B 66 LYS B 68 0 SHEET 2 L 2 LYS B 71 TYR B 73 -1 O TYR B 73 N PHE B 66 LINK ZN ZN B 1 NE2 HIS B 64 1555 1555 1.96 LINK ZN ZN B 1 SG CYS B 77 1555 1555 2.10 LINK ZN ZN B 1 SG CYS B 87 1555 1555 1.99 LINK ZN ZN B 1 SG CYS B 90 1555 1555 2.33 SITE 1 AC1 4 HIS B 64 CYS B 77 CYS B 87 CYS B 90 SITE 1 AC2 15 TYR A 33 SER A 36 PHE A 38 LYS A 48 SITE 2 AC2 15 TYR A 49 ARG A 59 GLY A 84 MET A 85 SITE 3 AC2 15 ASP A 95 PHE A 370 LYS A 374 ASN A 377 SITE 4 AC2 15 LYS A 378 VAL A 379 ILE A 380 CRYST1 196.029 196.029 85.170 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005101 0.002945 0.000000 0.00000 SCALE2 0.000000 0.005890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011741 0.00000