HEADER TRANSCRIPTION/RNA 26-AUG-05 2ATW TITLE STRUCTURE OF A MYCOBACTERIUM TUBERCULOSIS NUSA-RNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL RNA (5'- AGAACUCAAUAG -3'); COMPND 3 CHAIN: B, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TRANSCRIPTION ELONGATION PROTEIN NUSA; COMPND 7 CHAIN: A, C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: RNA OLIGONUCLEOTIDE SYNTHESIS; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 6 ORGANISM_TAXID: 1773; SOURCE 7 GENE: NUSA; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS PROTEIN-RNA COMPLEX, TRANSCRIPTION-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.BEUTH,S.PENNELL,K.B.ARNVIG,S.R.MARTIN,I.A.TAYLOR REVDAT 4 23-AUG-23 2ATW 1 SEQADV REVDAT 3 24-FEB-09 2ATW 1 VERSN REVDAT 2 15-NOV-05 2ATW 1 JRNL REVDAT 1 11-OCT-05 2ATW 0 JRNL AUTH B.BEUTH,S.PENNELL,K.B.ARNVIG,S.R.MARTIN,I.A.TAYLOR JRNL TITL STRUCTURE OF A MYCOBACTERIUM TUBERCULOSIS NUSA-RNA COMPLEX. JRNL REF EMBO J. V. 24 3576 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 16193062 JRNL DOI 10.1038/SJ.EMBOJ.7600829 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 26701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1425 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1878 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3365 REMARK 3 NUCLEIC ACID ATOMS : 510 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.297 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.301 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3981 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5505 ; 1.734 ; 2.127 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 4.277 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 620 ;18.571 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 633 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2838 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1679 ; 0.249 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 401 ; 0.188 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.239 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.253 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2219 ; 0.895 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3569 ; 1.704 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1762 ; 2.540 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1936 ; 3.950 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ATW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28167 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : 0.46000 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2ASB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, POTASSIUM REMARK 280 DIHYDROGENPHOSPHATE, PH 7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.28200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.44650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.77150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.44650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.28200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.77150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ONE MOLECULE NUSA IS IN COMPLEX WITH ONE MOLECULE RNA REMARK 300 OLIGONUCLEOTIDE. THE BIOLOGICAL ASSEMBLY IS A MONOMERIC 1:1 REMARK 300 COMPLEX. THERE ARE 2 BIOLOGICAL ASSEMBLIES IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 105 REMARK 465 GLU A 106 REMARK 465 PRO A 330 REMARK 465 PRO A 331 REMARK 465 PRO A 332 REMARK 465 GLY A 333 REMARK 465 GLN A 334 REMARK 465 PRO A 335 REMARK 465 GLU A 336 REMARK 465 PRO A 337 REMARK 465 GLY A 338 REMARK 465 VAL A 339 REMARK 465 SER A 340 REMARK 465 ARG A 341 REMARK 465 GLY A 342 REMARK 465 MET A 343 REMARK 465 ALA A 344 REMARK 465 HIS A 345 REMARK 465 ASP A 346 REMARK 465 ARG A 347 REMARK 465 LEU A 348 REMARK 465 GLU A 349 REMARK 465 HIS A 350 REMARK 465 HIS A 351 REMARK 465 HIS A 352 REMARK 465 HIS A 353 REMARK 465 HIS A 354 REMARK 465 HIS A 355 REMARK 465 PRO C 330 REMARK 465 PRO C 331 REMARK 465 PRO C 332 REMARK 465 GLY C 333 REMARK 465 GLN C 334 REMARK 465 PRO C 335 REMARK 465 GLU C 336 REMARK 465 PRO C 337 REMARK 465 GLY C 338 REMARK 465 VAL C 339 REMARK 465 SER C 340 REMARK 465 ARG C 341 REMARK 465 GLY C 342 REMARK 465 MET C 343 REMARK 465 ALA C 344 REMARK 465 HIS C 345 REMARK 465 ASP C 346 REMARK 465 ARG C 347 REMARK 465 LEU C 348 REMARK 465 GLU C 349 REMARK 465 HIS C 350 REMARK 465 HIS C 351 REMARK 465 HIS C 352 REMARK 465 HIS C 353 REMARK 465 HIS C 354 REMARK 465 HIS C 355 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG C 134 O HOH C 1109 2.04 REMARK 500 OP1 U B 9 O3' G B 11 2.12 REMARK 500 OE2 GLU C 106 NH1 ARG C 172 2.15 REMARK 500 CG ASP A 284 O HOH A 1081 2.16 REMARK 500 O HOH A 1060 O HOH A 1197 2.18 REMARK 500 OP1 U D 9 O3' G D 11 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 140 O HOH C 1128 1554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B 3 C5 A B 3 N7 -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 1 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 G B 1 C6 - N1 - C2 ANGL. DEV. = -3.8 DEGREES REMARK 500 A B 2 O4' - C1' - N9 ANGL. DEV. = 7.7 DEGREES REMARK 500 A B 3 O4' - C1' - N9 ANGL. DEV. = -5.9 DEGREES REMARK 500 A B 7 C4' - C3' - C2' ANGL. DEV. = -6.3 DEGREES REMARK 500 A B 8 O5' - C5' - C4' ANGL. DEV. = -5.5 DEGREES REMARK 500 A D 2 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 U D 9 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 U D 9 C3' - O3' - P ANGL. DEV. = -7.8 DEGREES REMARK 500 A D 10 O4' - C1' - N9 ANGL. DEV. = -8.5 DEGREES REMARK 500 A D 10 C4 - C5 - N7 ANGL. DEV. = 3.5 DEGREES REMARK 500 A D 10 N1 - C6 - N6 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP A 284 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 259 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 263 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 139 -100.31 -135.17 REMARK 500 ALA A 174 -93.98 -50.91 REMARK 500 ARG A 175 -77.49 -77.86 REMARK 500 HIS A 216 -63.74 -124.07 REMARK 500 MET A 239 16.30 56.68 REMARK 500 SER A 251 49.79 39.28 REMARK 500 ASP A 284 108.36 -167.44 REMARK 500 GLU A 306 17.56 55.03 REMARK 500 GLU C 106 -55.95 80.53 REMARK 500 THR C 139 -103.41 -127.30 REMARK 500 GLU C 176 133.29 170.16 REMARK 500 HIS C 216 -63.89 -121.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ASB RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH 12MER RNA. DBREF 2ATW A 105 347 UNP P0A5M2 NUSA_MYCTU 105 347 DBREF 2ATW C 105 347 UNP P0A5M2 NUSA_MYCTU 105 347 DBREF 2ATW B 0 11 PDB 2ATW 2ATW 0 11 DBREF 2ATW D 0 11 PDB 2ATW 2ATW 0 11 SEQADV 2ATW LEU A 348 UNP P0A5M2 CLONING ARTIFACT SEQADV 2ATW GLU A 349 UNP P0A5M2 CLONING ARTIFACT SEQADV 2ATW HIS A 350 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS A 351 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS A 352 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS A 353 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS A 354 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS A 355 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW LEU C 348 UNP P0A5M2 CLONING ARTIFACT SEQADV 2ATW GLU C 349 UNP P0A5M2 CLONING ARTIFACT SEQADV 2ATW HIS C 350 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS C 351 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS C 352 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS C 353 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS C 354 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS C 355 UNP P0A5M2 EXPRESSION TAG SEQRES 1 B 12 A G A A C U C A A U A G SEQRES 1 D 12 A G A A C U C A A U A G SEQRES 1 A 251 GLY GLU PHE SER THR ARG GLU GLY GLU ILE VAL ALA GLY SEQRES 2 A 251 VAL ILE GLN ARG ASP SER ARG ALA ASN ALA ARG GLY LEU SEQRES 3 A 251 VAL VAL VAL ARG ILE GLY THR GLU THR LYS ALA SER GLU SEQRES 4 A 251 GLY VAL ILE PRO ALA ALA GLU GLN VAL PRO GLY GLU SER SEQRES 5 A 251 TYR GLU HIS GLY ASN ARG LEU ARG CYS TYR VAL VAL GLY SEQRES 6 A 251 VAL THR ARG GLY ALA ARG GLU PRO LEU ILE THR LEU SER SEQRES 7 A 251 ARG THR HIS PRO ASN LEU VAL ARG LYS LEU PHE SER LEU SEQRES 8 A 251 GLU VAL PRO GLU ILE ALA ASP GLY SER VAL GLU ILE VAL SEQRES 9 A 251 ALA VAL ALA ARG GLU ALA GLY HIS ARG SER LYS ILE ALA SEQRES 10 A 251 VAL ARG SER ASN VAL ALA GLY LEU ASN ALA LYS GLY ALA SEQRES 11 A 251 CYS ILE GLY PRO MET GLY GLN ARG VAL ARG ASN VAL MET SEQRES 12 A 251 SER GLU LEU SER GLY GLU LYS ILE ASP ILE ILE ASP TYR SEQRES 13 A 251 ASP ASP ASP PRO ALA ARG PHE VAL ALA ASN ALA LEU SER SEQRES 14 A 251 PRO ALA LYS VAL VAL SER VAL SER VAL ILE ASP GLN THR SEQRES 15 A 251 ALA ARG ALA ALA ARG VAL VAL VAL PRO ASP PHE GLN LEU SEQRES 16 A 251 SER LEU ALA ILE GLY LYS GLU GLY GLN ASN ALA ARG LEU SEQRES 17 A 251 ALA ALA ARG LEU THR GLY TRP ARG ILE ASP ILE ARG GLY SEQRES 18 A 251 ASP ALA PRO PRO PRO PRO PRO GLY GLN PRO GLU PRO GLY SEQRES 19 A 251 VAL SER ARG GLY MET ALA HIS ASP ARG LEU GLU HIS HIS SEQRES 20 A 251 HIS HIS HIS HIS SEQRES 1 C 251 GLY GLU PHE SER THR ARG GLU GLY GLU ILE VAL ALA GLY SEQRES 2 C 251 VAL ILE GLN ARG ASP SER ARG ALA ASN ALA ARG GLY LEU SEQRES 3 C 251 VAL VAL VAL ARG ILE GLY THR GLU THR LYS ALA SER GLU SEQRES 4 C 251 GLY VAL ILE PRO ALA ALA GLU GLN VAL PRO GLY GLU SER SEQRES 5 C 251 TYR GLU HIS GLY ASN ARG LEU ARG CYS TYR VAL VAL GLY SEQRES 6 C 251 VAL THR ARG GLY ALA ARG GLU PRO LEU ILE THR LEU SER SEQRES 7 C 251 ARG THR HIS PRO ASN LEU VAL ARG LYS LEU PHE SER LEU SEQRES 8 C 251 GLU VAL PRO GLU ILE ALA ASP GLY SER VAL GLU ILE VAL SEQRES 9 C 251 ALA VAL ALA ARG GLU ALA GLY HIS ARG SER LYS ILE ALA SEQRES 10 C 251 VAL ARG SER ASN VAL ALA GLY LEU ASN ALA LYS GLY ALA SEQRES 11 C 251 CYS ILE GLY PRO MET GLY GLN ARG VAL ARG ASN VAL MET SEQRES 12 C 251 SER GLU LEU SER GLY GLU LYS ILE ASP ILE ILE ASP TYR SEQRES 13 C 251 ASP ASP ASP PRO ALA ARG PHE VAL ALA ASN ALA LEU SER SEQRES 14 C 251 PRO ALA LYS VAL VAL SER VAL SER VAL ILE ASP GLN THR SEQRES 15 C 251 ALA ARG ALA ALA ARG VAL VAL VAL PRO ASP PHE GLN LEU SEQRES 16 C 251 SER LEU ALA ILE GLY LYS GLU GLY GLN ASN ALA ARG LEU SEQRES 17 C 251 ALA ALA ARG LEU THR GLY TRP ARG ILE ASP ILE ARG GLY SEQRES 18 C 251 ASP ALA PRO PRO PRO PRO PRO GLY GLN PRO GLU PRO GLY SEQRES 19 C 251 VAL SER ARG GLY MET ALA HIS ASP ARG LEU GLU HIS HIS SEQRES 20 C 251 HIS HIS HIS HIS FORMUL 5 HOH *208(H2 O) HELIX 1 1 ASP A 122 ARG A 128 1 7 HELIX 2 2 PRO A 147 GLN A 151 5 5 HELIX 3 3 HIS A 185 VAL A 197 1 13 HELIX 4 4 VAL A 197 ASP A 202 1 6 HELIX 5 5 ASN A 230 GLY A 237 1 8 HELIX 6 6 GLY A 240 LEU A 250 1 11 HELIX 7 7 ASP A 263 LEU A 272 1 10 HELIX 8 8 PRO A 295 PHE A 297 5 3 HELIX 9 9 GLN A 298 GLY A 304 1 7 HELIX 10 10 GLY A 307 GLY A 318 1 12 HELIX 11 11 ASP C 122 ARG C 128 1 7 HELIX 12 12 PRO C 147 GLN C 151 5 5 HELIX 13 13 PRO C 186 VAL C 197 1 12 HELIX 14 14 VAL C 197 ASP C 202 1 6 HELIX 15 15 ASN C 230 GLY C 237 1 8 HELIX 16 16 GLY C 240 LEU C 250 1 11 HELIX 17 17 ASP C 263 LEU C 272 1 10 HELIX 18 18 PRO C 295 PHE C 297 5 3 HELIX 19 19 GLN C 298 GLY C 304 1 7 HELIX 20 20 GLY C 307 GLY C 318 1 12 SHEET 1 A 6 ILE A 114 GLN A 120 0 SHEET 2 A 6 VAL A 131 ILE A 135 -1 O ARG A 134 N VAL A 118 SHEET 3 A 6 SER A 142 ILE A 146 -1 O ILE A 146 N VAL A 131 SHEET 4 A 6 LEU A 178 SER A 182 1 O LEU A 181 N VAL A 145 SHEET 5 A 6 ARG A 162 THR A 171 -1 N THR A 171 O LEU A 178 SHEET 6 A 6 ILE A 114 GLN A 120 -1 N VAL A 115 O CYS A 165 SHEET 1 B 3 VAL A 205 GLU A 213 0 SHEET 2 B 3 ARG A 217 SER A 224 -1 O ALA A 221 N ALA A 209 SHEET 3 B 3 LYS A 254 ASP A 259 1 O ILE A 258 N ILE A 220 SHEET 1 C 3 SER A 279 ASP A 284 0 SHEET 2 C 3 ALA A 289 VAL A 294 -1 O ARG A 291 N SER A 281 SHEET 3 C 3 ARG A 320 GLY A 325 1 O ARG A 320 N ALA A 290 SHEET 1 D 6 ILE C 114 GLN C 120 0 SHEET 2 D 6 VAL C 131 ILE C 135 -1 O ARG C 134 N VAL C 118 SHEET 3 D 6 SER C 142 ILE C 146 -1 O GLY C 144 N VAL C 133 SHEET 4 D 6 LEU C 178 SER C 182 1 O LEU C 181 N VAL C 145 SHEET 5 D 6 ARG C 162 THR C 171 -1 N GLY C 169 O THR C 180 SHEET 6 D 6 ILE C 114 GLN C 120 -1 N VAL C 115 O CYS C 165 SHEET 1 E 3 VAL C 205 GLU C 213 0 SHEET 2 E 3 ARG C 217 SER C 224 -1 O ARG C 223 N GLU C 206 SHEET 3 E 3 LYS C 254 ASP C 259 1 O ILE C 258 N ILE C 220 SHEET 1 F 3 SER C 279 ASP C 284 0 SHEET 2 F 3 ALA C 289 VAL C 294 -1 O VAL C 293 N SER C 279 SHEET 3 F 3 ARG C 320 GLY C 325 1 O ASP C 322 N VAL C 292 CISPEP 1 SER A 273 PRO A 274 0 6.58 CISPEP 2 SER C 273 PRO C 274 0 6.96 CRYST1 64.564 89.543 100.893 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015489 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009911 0.00000