HEADER UNKNOWN FUNCTION 29-AUG-05 2AUW TITLE CRYSTAL STRUCTURE OF PUTATIVE DNA BINDING PROTEIN NE0471 FROM TITLE 2 NITROSOMONAS EUROPAEA ATCC 19718 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN NE0471; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA; SOURCE 3 ORGANISM_TAXID: 915; SOURCE 4 ATCC: 19718; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ALPHA-BETA STRUCTURE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,A.JOACHIMIAK,T.SKARINA,A.SAVCHENKO,A.EDWARDS,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 13-NOV-24 2AUW 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2AUW 1 VERSN REVDAT 2 24-FEB-09 2AUW 1 VERSN REVDAT 1 11-OCT-05 2AUW 0 JRNL AUTH Y.KIM,A.JOACHIMIAK,T.SKARINA,A.SAVCHENKO,A.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF THE HYPOTHETICAL PROTEIN NE0471 FROM JRNL TITL 2 NITROSOMONAS EUROPAEA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0000 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 27927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3123 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1676 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2484 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : 1.59000 REMARK 3 B33 (A**2) : -1.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.110 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2768 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3794 ; 1.285 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 341 ; 5.643 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;36.702 ;22.647 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;15.570 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.405 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2191 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1333 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 286 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 105 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1683 ; 0.863 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2681 ; 1.342 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1274 ; 2.055 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1113 ; 3.040 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FOLLOWING PROGRAMS WERE ALSO USED REMARK 3 IN DATA COLLECTION, PHASE DETERMINATION AND REFINEMENT OF THE REMARK 3 STRUCTURE: SBCCOLLECT, CNS, HKL2000_PH, MLPHARE, SHELX, AND REMARK 3 SOLVE/RESOLVE REMARK 4 REMARK 4 2AUW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31074 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.63600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, AMMONIUM FORMATE, SODIUM REMARK 280 CACODILATE, NDSB, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.85350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.85350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.06500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.78250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.06500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.78250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.85350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.06500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.78250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.85350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.06500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 78.78250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -54.13000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 128.56050 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 157.56500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 85.70700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1308 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1366 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 155 REMARK 465 ALA A 156 REMARK 465 TYR A 157 REMARK 465 ALA A 158 REMARK 465 LYS A 159 REMARK 465 GLY A 160 REMARK 465 VAL A 161 REMARK 465 SER A 162 REMARK 465 ALA A 163 REMARK 465 SER A 164 REMARK 465 LEU A 165 REMARK 465 SER A 166 REMARK 465 GLY A 167 REMARK 465 SER A 168 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 ALA B 156 REMARK 465 TYR B 157 REMARK 465 ALA B 158 REMARK 465 LYS B 159 REMARK 465 GLY B 160 REMARK 465 VAL B 161 REMARK 465 SER B 162 REMARK 465 ALA B 163 REMARK 465 SER B 164 REMARK 465 LEU B 165 REMARK 465 SER B 166 REMARK 465 GLY B 167 REMARK 465 SER B 168 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 50 O HOH A 1296 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 15 -150.83 -94.77 REMARK 500 TRP A 61 -61.27 112.93 REMARK 500 THR A 70 53.34 36.61 REMARK 500 SER B 25 -9.35 -58.70 REMARK 500 VAL B 56 139.22 -37.43 REMARK 500 TRP B 61 -55.31 64.53 REMARK 500 TRP B 67 -61.00 -121.32 REMARK 500 THR B 70 52.52 33.39 REMARK 500 ARG B 143 69.73 29.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5860 RELATED DB: TARGETDB DBREF 2AUW A 1 166 UNP Q82X29 Q82X29_NITEU 1 166 DBREF 2AUW B 1 166 UNP Q82X29 Q82X29_NITEU 1 166 SEQADV 2AUW GLY A -1 UNP Q82X29 CLONING ARTIFACT SEQADV 2AUW HIS A 0 UNP Q82X29 CLONING ARTIFACT SEQADV 2AUW MSE A 1 UNP Q82X29 MET 1 MODIFIED RESIDUE SEQADV 2AUW MSE A 92 UNP Q82X29 MET 92 MODIFIED RESIDUE SEQADV 2AUW MSE A 97 UNP Q82X29 MET 97 MODIFIED RESIDUE SEQADV 2AUW MSE A 117 UNP Q82X29 MET 117 MODIFIED RESIDUE SEQADV 2AUW GLY A 167 UNP Q82X29 CLONING ARTIFACT SEQADV 2AUW SER A 168 UNP Q82X29 CLONING ARTIFACT SEQADV 2AUW GLY B -1 UNP Q82X29 CLONING ARTIFACT SEQADV 2AUW HIS B 0 UNP Q82X29 CLONING ARTIFACT SEQADV 2AUW MSE B 1 UNP Q82X29 MET 1 MODIFIED RESIDUE SEQADV 2AUW MSE B 92 UNP Q82X29 MET 92 MODIFIED RESIDUE SEQADV 2AUW MSE B 97 UNP Q82X29 MET 97 MODIFIED RESIDUE SEQADV 2AUW MSE B 117 UNP Q82X29 MET 117 MODIFIED RESIDUE SEQADV 2AUW GLY B 167 UNP Q82X29 CLONING ARTIFACT SEQADV 2AUW SER B 168 UNP Q82X29 CLONING ARTIFACT SEQRES 1 A 170 GLY HIS MSE ASN GLU TYR PHE PHE PRO LYS LEU THR ALA SEQRES 2 A 170 VAL GLU ALA LEU ALA PRO TYR ARG LEU ARG THR THR TRP SEQRES 3 A 170 SER THR GLY GLU VAL LEU GLU VAL ASP VAL GLY ASP ILE SEQRES 4 A 170 LEU ARG LYS ILE PRO ASP LEU ALA PRO ILE LEU ASP PRO SEQRES 5 A 170 GLU ALA PHE ALA ARG VAL HIS ILE ALA GLU TRP GLU GLY SEQRES 6 A 170 SER VAL GLU TRP PHE ASP THR GLU PHE GLY ARG ASP ASN SEQRES 7 A 170 VAL TYR ALA TRP ALA LYS GLU GLN ALA GLY GLU VAL SER SEQRES 8 A 170 HIS GLU MSE PHE GLY ASP TRP MSE HIS ARG ASN ASN LEU SEQRES 9 A 170 SER LEU THR THR ALA ALA GLU ALA LEU GLY ILE SER ARG SEQRES 10 A 170 ARG MSE VAL SER TYR TYR ARG THR ALA HIS LYS ILE ILE SEQRES 11 A 170 PRO ARG THR ILE TRP LEU ALA CYS LEU GLY TRP GLU ALA SEQRES 12 A 170 THR ARG PRO GLU THR LYS THR LEU PRO ARG THR LEU PRO SEQRES 13 A 170 ALA ALA TYR ALA LYS GLY VAL SER ALA SER LEU SER GLY SEQRES 14 A 170 SER SEQRES 1 B 170 GLY HIS MSE ASN GLU TYR PHE PHE PRO LYS LEU THR ALA SEQRES 2 B 170 VAL GLU ALA LEU ALA PRO TYR ARG LEU ARG THR THR TRP SEQRES 3 B 170 SER THR GLY GLU VAL LEU GLU VAL ASP VAL GLY ASP ILE SEQRES 4 B 170 LEU ARG LYS ILE PRO ASP LEU ALA PRO ILE LEU ASP PRO SEQRES 5 B 170 GLU ALA PHE ALA ARG VAL HIS ILE ALA GLU TRP GLU GLY SEQRES 6 B 170 SER VAL GLU TRP PHE ASP THR GLU PHE GLY ARG ASP ASN SEQRES 7 B 170 VAL TYR ALA TRP ALA LYS GLU GLN ALA GLY GLU VAL SER SEQRES 8 B 170 HIS GLU MSE PHE GLY ASP TRP MSE HIS ARG ASN ASN LEU SEQRES 9 B 170 SER LEU THR THR ALA ALA GLU ALA LEU GLY ILE SER ARG SEQRES 10 B 170 ARG MSE VAL SER TYR TYR ARG THR ALA HIS LYS ILE ILE SEQRES 11 B 170 PRO ARG THR ILE TRP LEU ALA CYS LEU GLY TRP GLU ALA SEQRES 12 B 170 THR ARG PRO GLU THR LYS THR LEU PRO ARG THR LEU PRO SEQRES 13 B 170 ALA ALA TYR ALA LYS GLY VAL SER ALA SER LEU SER GLY SEQRES 14 B 170 SER MODRES 2AUW MSE A 92 MET SELENOMETHIONINE MODRES 2AUW MSE A 97 MET SELENOMETHIONINE MODRES 2AUW MSE A 117 MET SELENOMETHIONINE MODRES 2AUW MSE B 1 MET SELENOMETHIONINE MODRES 2AUW MSE B 92 MET SELENOMETHIONINE MODRES 2AUW MSE B 97 MET SELENOMETHIONINE MODRES 2AUW MSE B 117 MET SELENOMETHIONINE HET MSE A 92 8 HET MSE A 97 8 HET MSE A 117 8 HET MSE B 1 8 HET MSE B 92 8 HET MSE B 97 8 HET MSE B 117 8 HET GOL A1202 6 HET GOL B1201 6 HET FMT B1205 3 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 FMT C H2 O2 FORMUL 6 HOH *320(H2 O) HELIX 1 1 VAL A 34 ILE A 41 1 8 HELIX 2 2 PRO A 42 LEU A 48 5 7 HELIX 3 3 ASP A 49 ALA A 54 1 6 HELIX 4 4 GLY A 73 ALA A 85 1 13 HELIX 5 5 SER A 89 ASN A 100 1 12 HELIX 6 6 SER A 103 GLY A 112 1 10 HELIX 7 7 SER A 114 THR A 123 1 10 HELIX 8 8 PRO A 129 THR A 142 1 14 HELIX 9 9 VAL B 34 ILE B 41 1 8 HELIX 10 10 PRO B 42 LEU B 48 5 7 HELIX 11 11 ASP B 49 ALA B 54 1 6 HELIX 12 12 GLY B 73 ALA B 85 1 13 HELIX 13 13 SER B 89 ASN B 100 1 12 HELIX 14 14 SER B 103 GLY B 112 1 10 HELIX 15 15 SER B 114 THR B 123 1 10 HELIX 16 16 PRO B 129 ARG B 143 1 15 SHEET 1 A 3 LEU A 9 ALA A 14 0 SHEET 2 A 3 ARG A 19 TRP A 24 -1 O THR A 23 N THR A 10 SHEET 3 A 3 VAL A 29 ASP A 33 -1 O LEU A 30 N THR A 22 SHEET 1 B 2 HIS A 57 ILE A 58 0 SHEET 2 B 2 VAL A 65 GLU A 66 -1 O GLU A 66 N HIS A 57 SHEET 1 C 3 LEU B 9 ALA B 14 0 SHEET 2 C 3 ARG B 19 TRP B 24 -1 O THR B 23 N ALA B 11 SHEET 3 C 3 VAL B 29 ASP B 33 -1 O LEU B 30 N THR B 22 SHEET 1 D 2 HIS B 57 ILE B 58 0 SHEET 2 D 2 VAL B 65 GLU B 66 -1 O GLU B 66 N HIS B 57 LINK C GLU A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N PHE A 93 1555 1555 1.33 LINK C TRP A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N AHIS A 98 1555 1555 1.33 LINK C MSE A 97 N BHIS A 98 1555 1555 1.34 LINK C ARG A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N VAL A 118 1555 1555 1.33 LINK C MSE B 1 N ASN B 2 1555 1555 1.33 LINK C GLU B 91 N MSE B 92 1555 1555 1.33 LINK C MSE B 92 N PHE B 93 1555 1555 1.33 LINK C TRP B 96 N MSE B 97 1555 1555 1.33 LINK C MSE B 97 N HIS B 98 1555 1555 1.33 LINK C ARG B 116 N MSE B 117 1555 1555 1.33 LINK C MSE B 117 N VAL B 118 1555 1555 1.32 CISPEP 1 PRO A 17 TYR A 18 0 -3.20 CISPEP 2 ARG A 143 PRO A 144 0 -1.84 CISPEP 3 PRO B 17 TYR B 18 0 4.59 SITE 1 AC1 8 LEU A 48 TYR B 4 SER B 119 TYR B 120 SITE 2 AC1 8 THR B 123 HIS B 125 HOH B1240 HOH B1311 SITE 1 AC2 7 ASP A 33 VAL A 34 ASP A 36 ILE A 37 SITE 2 AC2 7 TRP A 80 HOH A1221 HOH A1239 SITE 1 AC3 5 ARG B 39 GLU B 91 ASP B 95 HOH B1360 SITE 2 AC3 5 HOH B1374 CRYST1 54.130 157.565 85.707 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018474 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011668 0.00000