HEADER OXIDOREDUCTASE 31-AUG-05 2AW9 TITLE SUPEROXIDE DISMUTASE WITH MANGANESE FROM DEINOCOCCUS RADIODURANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [MN]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MNSOD; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: SODA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.TANAKA,M.R.SAWAYA,S.CHAN,L.J.PERRY REVDAT 5 23-AUG-23 2AW9 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 2AW9 1 REMARK REVDAT 3 13-JUL-11 2AW9 1 VERSN REVDAT 2 24-FEB-09 2AW9 1 VERSN REVDAT 1 22-AUG-06 2AW9 0 JRNL AUTH S.TANAKA,M.R.SAWAYA,S.CHAN,L.J.PERRY JRNL TITL CRYSTAL STRUCTURE OF MANGANESE SUPEROXIDE DISMUTASE FROM JRNL TITL 2 DEINOCOCCUS RADIODURANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 11008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 572 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 605 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3287 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.11000 REMARK 3 B22 (A**2) : -4.47000 REMARK 3 B33 (A**2) : 8.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.59000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.332 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.277 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.357 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3375 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2892 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4589 ; 1.742 ; 1.917 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6731 ; 0.956 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 414 ; 7.430 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;37.663 ;24.886 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;16.974 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.944 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 476 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3858 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 696 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 775 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2805 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1699 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1773 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 76 ; 0.101 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.161 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 9 ; 0.208 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.236 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2626 ; 0.805 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 854 ; 0.145 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3291 ; 0.991 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1572 ; 1.584 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1298 ; 2.568 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 211 1 REMARK 3 1 B 1 B 211 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3072 ; 0.05 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 3072 ; 0.13 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6681 16.4545 5.8683 REMARK 3 T TENSOR REMARK 3 T11: -0.1846 T22: -0.1396 REMARK 3 T33: 0.0939 T12: -0.0108 REMARK 3 T13: 0.0380 T23: -0.0975 REMARK 3 L TENSOR REMARK 3 L11: 0.8133 L22: 3.6846 REMARK 3 L33: 1.1026 L12: 0.0181 REMARK 3 L13: -0.0267 L23: -1.0123 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: 0.0312 S13: -0.0675 REMARK 3 S21: 0.3591 S22: -0.0823 S23: 0.1046 REMARK 3 S31: -0.0984 S32: 0.0151 S33: 0.1045 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 211 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0314 19.1377 -22.8558 REMARK 3 T TENSOR REMARK 3 T11: 0.2405 T22: -0.0007 REMARK 3 T33: 0.1578 T12: 0.0405 REMARK 3 T13: 0.1608 T23: -0.1284 REMARK 3 L TENSOR REMARK 3 L11: 1.4057 L22: 2.8699 REMARK 3 L33: 1.9063 L12: -0.2293 REMARK 3 L13: -0.1355 L23: 0.0907 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: 0.3028 S13: -0.2119 REMARK 3 S21: -1.1666 S22: -0.1090 S23: -0.3161 REMARK 3 S31: -0.0493 S32: -0.1316 S33: 0.1206 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2AW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5499 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DCS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11594 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 20.3297 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23500 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: 1Y67 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, TRIS REMARK 280 -HYDROCHLORIDE, PEG 4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.74950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A DIMER WHICH CORRESPONDS TO REMARK 300 THE BIOLOGICAL ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLN A 94 REMARK 465 ASN A 95 REMARK 465 GLY A 96 REMARK 465 PRO A 214 REMARK 465 ARG A 215 REMARK 465 GLY A 216 REMARK 465 SER A 217 REMARK 465 ALA A 218 REMARK 465 ALA A 219 REMARK 465 ALA A 220 REMARK 465 LEU A 221 REMARK 465 GLU A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 MET B 0 REMARK 465 GLN B 94 REMARK 465 ASN B 95 REMARK 465 GLY B 96 REMARK 465 LEU B 212 REMARK 465 VAL B 213 REMARK 465 PRO B 214 REMARK 465 ARG B 215 REMARK 465 GLY B 216 REMARK 465 SER B 217 REMARK 465 ALA B 218 REMARK 465 ALA B 219 REMARK 465 ALA B 220 REMARK 465 LEU B 221 REMARK 465 GLU B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 30 -61.09 -106.33 REMARK 500 ASN A 151 -116.66 48.73 REMARK 500 TYR A 179 -5.81 -143.93 REMARK 500 GLN A 184 -125.76 48.52 REMARK 500 LYS B 30 -60.35 -103.92 REMARK 500 LEU B 43 -6.70 -60.00 REMARK 500 ASN B 151 -122.42 48.53 REMARK 500 GLN B 184 -128.69 47.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 45 THR A 46 -137.52 REMARK 500 GLY B 45 THR B 46 -141.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 229 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 27 NE2 REMARK 620 2 HIS A 81 NE2 90.3 REMARK 620 3 ASP A 173 OD2 89.2 108.0 REMARK 620 4 HIS A 177 NE2 93.4 136.6 115.3 REMARK 620 5 HOH A 236 O 166.9 92.2 77.8 93.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 229 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 27 NE2 REMARK 620 2 HIS B 81 NE2 90.2 REMARK 620 3 ASP B 173 OD2 95.2 97.4 REMARK 620 4 HIS B 177 NE2 92.5 132.3 129.7 REMARK 620 5 HOH B 240 O 171.3 81.4 83.6 94.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 229 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y67 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT MANGANESE. DBREF 2AW9 A 2 211 UNP Q9RUV2 SODM_DEIRA 1 210 DBREF 2AW9 B 2 211 UNP Q9RUV2 SODM_DEIRA 1 210 SEQADV 2AW9 MET A 0 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 ALA A 1 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 LEU A 212 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 VAL A 213 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 PRO A 214 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 ARG A 215 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 GLY A 216 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 SER A 217 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 ALA A 218 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 ALA A 219 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 ALA A 220 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 LEU A 221 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 GLU A 222 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 HIS A 223 UNP Q9RUV2 EXPRESSION TAG SEQADV 2AW9 HIS A 224 UNP Q9RUV2 EXPRESSION TAG SEQADV 2AW9 HIS A 225 UNP Q9RUV2 EXPRESSION TAG SEQADV 2AW9 HIS A 226 UNP Q9RUV2 EXPRESSION TAG SEQADV 2AW9 HIS A 227 UNP Q9RUV2 EXPRESSION TAG SEQADV 2AW9 HIS A 228 UNP Q9RUV2 EXPRESSION TAG SEQADV 2AW9 MET B 0 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 ALA B 1 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 LEU B 212 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 VAL B 213 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 PRO B 214 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 ARG B 215 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 GLY B 216 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 SER B 217 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 ALA B 218 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 ALA B 219 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 ALA B 220 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 LEU B 221 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 GLU B 222 UNP Q9RUV2 CLONING ARTIFACT SEQADV 2AW9 HIS B 223 UNP Q9RUV2 EXPRESSION TAG SEQADV 2AW9 HIS B 224 UNP Q9RUV2 EXPRESSION TAG SEQADV 2AW9 HIS B 225 UNP Q9RUV2 EXPRESSION TAG SEQADV 2AW9 HIS B 226 UNP Q9RUV2 EXPRESSION TAG SEQADV 2AW9 HIS B 227 UNP Q9RUV2 EXPRESSION TAG SEQADV 2AW9 HIS B 228 UNP Q9RUV2 EXPRESSION TAG SEQRES 1 A 229 MET ALA ALA TYR THR LEU PRO GLN LEU PRO TYR ALA TYR SEQRES 2 A 229 ASP ALA LEU GLU PRO HIS ILE ASP ALA ARG THR MET GLU SEQRES 3 A 229 ILE HIS HIS THR LYS HIS HIS GLN THR TYR VAL ASP ASN SEQRES 4 A 229 ALA ASN LYS ALA LEU GLU GLY THR GLU PHE ALA ASP LEU SEQRES 5 A 229 PRO VAL GLU GLN LEU ILE GLN GLN LEU ASP ARG VAL PRO SEQRES 6 A 229 ALA ASP LYS LYS GLY ALA LEU ARG ASN ASN ALA GLY GLY SEQRES 7 A 229 HIS ALA ASN HIS SER MET PHE TRP GLN ILE MET GLY GLN SEQRES 8 A 229 GLY GLN GLY GLN ASN GLY ALA ASN GLN PRO SER GLY GLU SEQRES 9 A 229 LEU LEU ASP ALA ILE ASN SER ALA PHE GLY SER PHE ASP SEQRES 10 A 229 ALA PHE LYS GLN LYS PHE GLU ASP ALA ALA LYS THR ARG SEQRES 11 A 229 PHE GLY SER GLY TRP ALA TRP LEU VAL VAL LYS ASP GLY SEQRES 12 A 229 LYS LEU ASP VAL VAL SER THR ALA ASN GLN ASP ASN PRO SEQRES 13 A 229 LEU MET GLY GLU ALA ILE ALA GLY VAL SER GLY THR PRO SEQRES 14 A 229 ILE LEU GLY VAL ASP VAL TRP GLU HIS ALA TYR TYR LEU SEQRES 15 A 229 ASN TYR GLN ASN ARG ARG PRO ASP TYR LEU ALA ALA PHE SEQRES 16 A 229 TRP ASN VAL VAL ASN TRP ASP GLU VAL SER LYS ARG TYR SEQRES 17 A 229 ALA ALA ALA LYS LEU VAL PRO ARG GLY SER ALA ALA ALA SEQRES 18 A 229 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 229 MET ALA ALA TYR THR LEU PRO GLN LEU PRO TYR ALA TYR SEQRES 2 B 229 ASP ALA LEU GLU PRO HIS ILE ASP ALA ARG THR MET GLU SEQRES 3 B 229 ILE HIS HIS THR LYS HIS HIS GLN THR TYR VAL ASP ASN SEQRES 4 B 229 ALA ASN LYS ALA LEU GLU GLY THR GLU PHE ALA ASP LEU SEQRES 5 B 229 PRO VAL GLU GLN LEU ILE GLN GLN LEU ASP ARG VAL PRO SEQRES 6 B 229 ALA ASP LYS LYS GLY ALA LEU ARG ASN ASN ALA GLY GLY SEQRES 7 B 229 HIS ALA ASN HIS SER MET PHE TRP GLN ILE MET GLY GLN SEQRES 8 B 229 GLY GLN GLY GLN ASN GLY ALA ASN GLN PRO SER GLY GLU SEQRES 9 B 229 LEU LEU ASP ALA ILE ASN SER ALA PHE GLY SER PHE ASP SEQRES 10 B 229 ALA PHE LYS GLN LYS PHE GLU ASP ALA ALA LYS THR ARG SEQRES 11 B 229 PHE GLY SER GLY TRP ALA TRP LEU VAL VAL LYS ASP GLY SEQRES 12 B 229 LYS LEU ASP VAL VAL SER THR ALA ASN GLN ASP ASN PRO SEQRES 13 B 229 LEU MET GLY GLU ALA ILE ALA GLY VAL SER GLY THR PRO SEQRES 14 B 229 ILE LEU GLY VAL ASP VAL TRP GLU HIS ALA TYR TYR LEU SEQRES 15 B 229 ASN TYR GLN ASN ARG ARG PRO ASP TYR LEU ALA ALA PHE SEQRES 16 B 229 TRP ASN VAL VAL ASN TRP ASP GLU VAL SER LYS ARG TYR SEQRES 17 B 229 ALA ALA ALA LYS LEU VAL PRO ARG GLY SER ALA ALA ALA SEQRES 18 B 229 LEU GLU HIS HIS HIS HIS HIS HIS HET MN A 229 1 HET MN B 229 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *25(H2 O) HELIX 1 1 ASP A 20 LYS A 30 1 11 HELIX 2 2 LYS A 30 GLU A 44 1 15 HELIX 3 3 PRO A 52 ILE A 57 1 6 HELIX 4 4 PRO A 64 ASP A 66 5 3 HELIX 5 5 LYS A 67 ILE A 87 1 21 HELIX 6 6 SER A 101 GLY A 113 1 13 HELIX 7 7 SER A 114 ARG A 129 1 16 HELIX 8 8 ASN A 154 MET A 157 5 4 HELIX 9 9 GLY A 158 GLY A 163 1 6 HELIX 10 10 TRP A 175 ALA A 178 5 4 HELIX 11 11 TYR A 179 GLN A 184 1 6 HELIX 12 12 ARG A 186 TRP A 195 1 10 HELIX 13 13 ASN A 199 LYS A 211 1 13 HELIX 14 14 ASP B 20 LYS B 30 1 11 HELIX 15 15 LYS B 30 GLU B 44 1 15 HELIX 16 16 PRO B 52 ILE B 57 1 6 HELIX 17 17 PRO B 64 ASP B 66 5 3 HELIX 18 18 LYS B 67 ILE B 87 1 21 HELIX 19 19 SER B 101 GLY B 113 1 13 HELIX 20 20 SER B 114 THR B 128 1 15 HELIX 21 21 ASN B 154 LEU B 156 5 3 HELIX 22 22 MET B 157 GLY B 163 1 7 HELIX 23 23 TRP B 175 ALA B 178 5 4 HELIX 24 24 TYR B 179 GLN B 184 1 6 HELIX 25 25 ARG B 186 VAL B 198 1 13 HELIX 26 26 ASN B 199 LYS B 211 1 13 SHEET 1 A 3 LYS A 143 ALA A 150 0 SHEET 2 A 3 GLY A 133 LYS A 140 -1 N TRP A 136 O VAL A 147 SHEET 3 A 3 THR A 167 ASP A 173 -1 O ILE A 169 N LEU A 137 SHEET 1 B 3 LYS B 143 ALA B 150 0 SHEET 2 B 3 GLY B 133 LYS B 140 -1 N TRP B 136 O VAL B 147 SHEET 3 B 3 THR B 167 ASP B 173 -1 O LEU B 170 N LEU B 137 LINK NE2 HIS A 27 MN MN A 229 1555 1555 2.35 LINK NE2 HIS A 81 MN MN A 229 1555 1555 2.19 LINK OD2 ASP A 173 MN MN A 229 1555 1555 1.85 LINK NE2 HIS A 177 MN MN A 229 1555 1555 2.16 LINK MN MN A 229 O HOH A 236 1555 1555 2.63 LINK NE2 HIS B 27 MN MN B 229 1555 1555 2.19 LINK NE2 HIS B 81 MN MN B 229 1555 1555 2.34 LINK OD2 ASP B 173 MN MN B 229 1555 1555 1.90 LINK NE2 HIS B 177 MN MN B 229 1555 1555 2.07 LINK MN MN B 229 O HOH B 240 1555 1555 2.20 CISPEP 1 GLU A 16 PRO A 17 0 -2.05 CISPEP 2 GLU B 16 PRO B 17 0 -1.08 SITE 1 AC1 5 HIS A 27 HIS A 81 ASP A 173 HIS A 177 SITE 2 AC1 5 HOH A 236 SITE 1 AC2 5 HIS B 27 HIS B 81 ASP B 173 HIS B 177 SITE 2 AC2 5 HOH B 240 CRYST1 43.833 83.499 65.495 90.00 105.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022814 0.000000 0.006452 0.00000 SCALE2 0.000000 0.011976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015867 0.00000