HEADER DNA BINDING PROTEIN, PROTEIN BINDING 05-SEP-05 2AXL TITLE SOLUTION STRUCTURE OF A MULTIFUNCTIONAL DNA- AND PROTEIN-BINDING TITLE 2 DOMAIN OF HUMAN WERNER SYNDROME PROTEIN CAVEAT 2AXL CHIRALITY ERROR AT THE CG CENTER OF LEU A 115 COMPND MOL_ID: 1; COMPND 2 MOLECULE: WERNER SYNDROME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THE DPBD; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32D KEYWDS THE WH-LIKE DOMAIN, DNA BINDING PROTEIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.-S.HU,H.FENG,W.ZENG,G.-X.LIN,X.G.XI REVDAT 4 09-MAR-22 2AXL 1 REMARK REVDAT 3 24-FEB-09 2AXL 1 VERSN REVDAT 2 10-JAN-06 2AXL 1 JRNL REVDAT 1 13-DEC-05 2AXL 0 JRNL AUTH J.-S.HU,H.FENG,W.ZENG,G.-X.LIN,X.G.XI JRNL TITL SOLUTION STRUCTURE OF A MULTIFUNCTIONAL DNA- AND JRNL TITL 2 PROTEIN-BINDING MOTIF OF HUMAN WERNER SYNDROME PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 18379 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16339893 JRNL DOI 10.1073/PNAS.0509380102 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH XPLOR-NIH, XPLOR-NIH XPLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, C.D., KUSZEWSKI, J., TJANDRA, N. & REMARK 3 CLORE, G.M. (2003) (XPLOR-NIH), SCHWIETERS, C.D., REMARK 3 KUSZEWSKI, J., TJANDRA, N. & CLORE, G.M. (2003) REMARK 3 (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AXL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034434. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295.2 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 25 MM KPI + 25 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.35 MM IN KPI BUFFER (PH7.4) 25 REMARK 210 MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : D_15N-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 4D_13C- REMARK 210 SEPARATED_NOESY; 4D_13C/15N- REMARK 210 SEPARATED_NOESY; HNHA; HNCG_AROM, REMARK 210 HN(CO)CG_AROM REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM, REMARK 210 STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: HCCH-COSY WAS OPTIMIZED FOR DETECTION FOR CH3 GROUPS, REMARK 210 2D SPIN ECHO FOR 1H-13C HSQC SELECTED FOR AROMATIC AND CARBONYL REMARK 210 CONTAINING RESIDUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 7 OG SER A 8 1.25 REMARK 500 HE22 GLN A 14 HE1 TRP A 66 1.30 REMARK 500 O SER A 65 H ALA A 69 1.41 REMARK 500 O PHE A 16 H SER A 20 1.42 REMARK 500 O ALA A 15 H LEU A 19 1.52 REMARK 500 O THR A 96 H ARG A 100 1.53 REMARK 500 O ARG A 100 H HIS A 104 1.54 REMARK 500 HE1 TRP A 9 O GLN A 116 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PHE A 37 CA - C - O ANGL. DEV. = -24.2 DEGREES REMARK 500 1 PHE A 37 CA - C - N ANGL. DEV. = 25.1 DEGREES REMARK 500 1 ILE A 114 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 1 LEU A 115 CB - CG - CD1 ANGL. DEV. = 40.4 DEGREES REMARK 500 1 LEU A 115 CB - CG - CD2 ANGL. DEV. = -64.8 DEGREES REMARK 500 2 PHE A 37 CA - C - O ANGL. DEV. = -24.2 DEGREES REMARK 500 2 PHE A 37 CA - C - N ANGL. DEV. = 25.0 DEGREES REMARK 500 2 ILE A 114 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 2 LEU A 115 CB - CG - CD1 ANGL. DEV. = 40.4 DEGREES REMARK 500 2 LEU A 115 CB - CG - CD2 ANGL. DEV. = -64.8 DEGREES REMARK 500 3 PHE A 37 CA - C - O ANGL. DEV. = -24.2 DEGREES REMARK 500 3 PHE A 37 CA - C - N ANGL. DEV. = 25.1 DEGREES REMARK 500 3 ILE A 114 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 3 LEU A 115 CB - CG - CD1 ANGL. DEV. = 40.4 DEGREES REMARK 500 3 LEU A 115 CB - CG - CD2 ANGL. DEV. = -64.8 DEGREES REMARK 500 4 PHE A 37 CA - C - O ANGL. DEV. = -24.2 DEGREES REMARK 500 4 PHE A 37 CA - C - N ANGL. DEV. = 25.1 DEGREES REMARK 500 4 ILE A 114 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 4 LEU A 115 CB - CG - CD1 ANGL. DEV. = 40.4 DEGREES REMARK 500 4 LEU A 115 CB - CG - CD2 ANGL. DEV. = -64.9 DEGREES REMARK 500 5 PHE A 37 CA - C - O ANGL. DEV. = -24.1 DEGREES REMARK 500 5 PHE A 37 CA - C - N ANGL. DEV. = 25.0 DEGREES REMARK 500 5 ILE A 114 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 5 LEU A 115 CB - CG - CD1 ANGL. DEV. = 40.4 DEGREES REMARK 500 5 LEU A 115 CB - CG - CD2 ANGL. DEV. = -64.8 DEGREES REMARK 500 6 PHE A 37 CA - C - O ANGL. DEV. = -24.2 DEGREES REMARK 500 6 PHE A 37 CA - C - N ANGL. DEV. = 25.1 DEGREES REMARK 500 6 ILE A 114 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 6 LEU A 115 CB - CG - CD1 ANGL. DEV. = 40.4 DEGREES REMARK 500 6 LEU A 115 CB - CG - CD2 ANGL. DEV. = -64.8 DEGREES REMARK 500 7 PHE A 37 CA - C - O ANGL. DEV. = -24.2 DEGREES REMARK 500 7 PHE A 37 CA - C - N ANGL. DEV. = 25.1 DEGREES REMARK 500 7 ILE A 114 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 7 LEU A 115 CB - CG - CD1 ANGL. DEV. = 40.4 DEGREES REMARK 500 7 LEU A 115 CB - CG - CD2 ANGL. DEV. = -64.8 DEGREES REMARK 500 8 PHE A 37 CA - C - O ANGL. DEV. = -24.2 DEGREES REMARK 500 8 PHE A 37 CA - C - N ANGL. DEV. = 25.1 DEGREES REMARK 500 8 ILE A 114 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 8 LEU A 115 CB - CG - CD1 ANGL. DEV. = 40.3 DEGREES REMARK 500 8 LEU A 115 CB - CG - CD2 ANGL. DEV. = -64.8 DEGREES REMARK 500 9 PHE A 37 CA - C - O ANGL. DEV. = -24.2 DEGREES REMARK 500 9 PHE A 37 CA - C - N ANGL. DEV. = 25.1 DEGREES REMARK 500 9 ILE A 114 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 9 LEU A 115 CB - CG - CD1 ANGL. DEV. = 40.4 DEGREES REMARK 500 9 LEU A 115 CB - CG - CD2 ANGL. DEV. = -64.9 DEGREES REMARK 500 10 PHE A 37 CA - C - O ANGL. DEV. = -24.1 DEGREES REMARK 500 10 PHE A 37 CA - C - N ANGL. DEV. = 25.1 DEGREES REMARK 500 10 ILE A 114 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 10 LEU A 115 CB - CG - CD1 ANGL. DEV. = 40.4 DEGREES REMARK 500 10 LEU A 115 CB - CG - CD2 ANGL. DEV. = -64.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 6 -161.98 -77.90 REMARK 500 1 SER A 8 118.05 -171.37 REMARK 500 1 TRP A 9 132.75 178.70 REMARK 500 1 GLU A 27 3.15 55.24 REMARK 500 1 LYS A 28 39.38 -81.54 REMARK 500 1 TYR A 50 35.12 -95.29 REMARK 500 1 HIS A 53 101.28 -42.89 REMARK 500 1 ASN A 87 91.81 87.06 REMARK 500 1 PHE A 89 -77.22 -74.65 REMARK 500 1 MET A 90 87.40 -159.56 REMARK 500 1 LYS A 91 91.76 28.37 REMARK 500 1 THR A 96 -166.99 -100.46 REMARK 500 1 THR A 108 -92.85 -77.54 REMARK 500 1 LEU A 113 112.89 -172.36 REMARK 500 1 CYS A 122 71.10 -155.68 REMARK 500 1 LYS A 125 34.29 -82.19 REMARK 500 1 LYS A 139 107.83 -165.36 REMARK 500 2 SER A 4 103.44 -58.51 REMARK 500 2 TRP A 9 144.89 -176.32 REMARK 500 2 LYS A 28 40.15 -82.37 REMARK 500 2 TYR A 50 1.90 -65.53 REMARK 500 2 LEU A 55 8.61 -56.04 REMARK 500 2 ASN A 87 82.85 84.61 REMARK 500 2 PHE A 89 -81.53 -77.81 REMARK 500 2 LYS A 91 97.63 30.64 REMARK 500 2 ALA A 106 -1.65 -57.60 REMARK 500 2 THR A 108 -95.36 -50.56 REMARK 500 2 LYS A 139 108.59 -164.27 REMARK 500 2 GLU A 140 34.21 -99.66 REMARK 500 3 TRP A 9 140.83 -178.64 REMARK 500 3 SER A 43 97.88 -162.47 REMARK 500 3 TYR A 50 36.54 -83.70 REMARK 500 3 HIS A 53 89.62 -42.30 REMARK 500 3 LEU A 55 -2.30 -50.10 REMARK 500 3 ASN A 87 91.56 87.57 REMARK 500 3 PHE A 89 -80.94 -75.83 REMARK 500 3 LYS A 91 91.70 26.95 REMARK 500 3 LYS A 97 -17.30 -46.70 REMARK 500 3 LYS A 105 -51.06 -136.82 REMARK 500 3 ALA A 106 30.29 -83.30 REMARK 500 3 THR A 108 -99.35 -75.35 REMARK 500 3 GLU A 109 71.34 -150.37 REMARK 500 3 LEU A 121 55.14 -106.31 REMARK 500 3 CYS A 122 62.41 -150.82 REMARK 500 3 LYS A 125 57.14 -67.50 REMARK 500 3 LYS A 139 108.83 -166.25 REMARK 500 4 SER A 4 96.34 -58.85 REMARK 500 4 SER A 8 116.28 -166.52 REMARK 500 4 TRP A 9 140.42 177.28 REMARK 500 4 ARG A 39 6.77 -62.98 REMARK 500 REMARK 500 THIS ENTRY HAS 170 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2AXL A 1 144 UNP Q14191 WRN_HUMAN 949 1092 SEQRES 1 A 144 MET ASP ASP SER GLU ASP THR SER TRP ASP PHE GLY PRO SEQRES 2 A 144 GLN ALA PHE LYS LEU LEU SER ALA VAL ASP ILE LEU GLY SEQRES 3 A 144 GLU LYS PHE GLY ILE GLY LEU PRO ILE LEU PHE LEU ARG SEQRES 4 A 144 GLY SER ASN SER GLN ARG LEU ALA ASP GLN TYR ARG ARG SEQRES 5 A 144 HIS SER LEU PHE GLY THR GLY LYS ASP GLN THR GLU SER SEQRES 6 A 144 TRP TRP LYS ALA PHE SER ARG GLN LEU ILE THR GLU GLY SEQRES 7 A 144 PHE LEU VAL GLU VAL SER ARG TYR ASN LYS PHE MET LYS SEQRES 8 A 144 ILE CYS ALA LEU THR LYS LYS GLY ARG ASN TRP LEU HIS SEQRES 9 A 144 LYS ALA ASN THR GLU SER GLN SER LEU ILE LEU GLN ALA SEQRES 10 A 144 ASN GLU GLU LEU CYS PRO LYS LYS LEU LEU LEU PRO SER SEQRES 11 A 144 SER LYS THR VAL SER SER GLY THR LYS GLU HIS CYS TYR SEQRES 12 A 144 ASN HELIX 1 1 PHE A 11 LEU A 25 1 15 HELIX 2 2 ILE A 31 ARG A 39 1 9 HELIX 3 3 GLN A 44 TYR A 50 1 7 HELIX 4 4 GLY A 57 GLN A 62 5 6 HELIX 5 5 THR A 63 GLY A 78 1 16 HELIX 6 6 THR A 96 ALA A 106 1 11 SHEET 1 A 2 SER A 8 ASP A 10 0 SHEET 2 A 2 ILE A 114 GLN A 116 -1 O LEU A 115 N TRP A 9 SHEET 1 B 2 LEU A 80 VAL A 83 0 SHEET 2 B 2 ILE A 92 LEU A 95 -1 O ALA A 94 N VAL A 81 CISPEP 1 THR A 7 SER A 8 1 -7.94 CISPEP 2 THR A 7 SER A 8 2 -7.74 CISPEP 3 THR A 7 SER A 8 3 -7.62 CISPEP 4 THR A 7 SER A 8 4 -7.44 CISPEP 5 THR A 7 SER A 8 5 -7.46 CISPEP 6 THR A 7 SER A 8 6 -7.27 CISPEP 7 THR A 7 SER A 8 7 -7.32 CISPEP 8 THR A 7 SER A 8 8 -7.20 CISPEP 9 THR A 7 SER A 8 9 -8.18 CISPEP 10 THR A 7 SER A 8 10 -7.37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1