HEADER TRANSFERASE 07-SEP-05 2AYA TITLE SOLUTION STRUCTURE OF THE C-TERMINAL 14 KDA DOMAIN OF THE TAU SUBUNIT TITLE 2 FROM ESCHERICHIA COLI DNA POLYMERASE III COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE III SUBUNIT TAU; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TAU SUBUNIT OF DNA POLYMERASE III; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: DNAX, DNAZ, DNAZX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSJ1308 KEYWDS KH-FOLD, C-TERMINUS OF POLYMERASE III TAU SUBUNIT, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.JERGIC,N.E.DIXON,G.OTTING,X.C.SU REVDAT 5 22-MAY-24 2AYA 1 REMARK REVDAT 4 09-MAR-22 2AYA 1 REMARK SEQADV REVDAT 3 24-FEB-09 2AYA 1 VERSN REVDAT 2 14-AUG-07 2AYA 1 JRNL REVDAT 1 14-NOV-06 2AYA 0 JRNL AUTH X.C.SU,S.JERGIC,M.A.KENIRY,N.E.DIXON,G.OTTING JRNL TITL SOLUTION STRUCTURE OF DOMAINS IVA AND V OF THE TAU SUBUNIT JRNL TITL 2 OF ESCHERICHIA COLI DNA POLYMERASE III AND INTERACTION WITH JRNL TITL 3 THE ALPHA SUBUNIT. JRNL REF NUCLEIC ACIDS RES. V. 35 2825 2007 JRNL REFN ISSN 0305-1048 JRNL PMID 17452361 JRNL DOI 10.1093/NAR/GKM080 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, OPAL 2.6 REMARK 3 AUTHORS : BRUKER (TOPSPIN), LUGINBUEHL (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1891 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS AND 241 DIHEDRAL ANGLE RESTRAINTS. REMARK 4 REMARK 4 2AYA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034448. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.8 MM TAU14 15N,13C; 5 MM REMARK 210 PHOSPHATE BUFFER WITH 100 MM REMARK 210 NACL; PH 6.8; 90% H2O, 10% D2O; REMARK 210 0.6 MM TAU14 10% 13C; 5 MM REMARK 210 PHOSPHATE BUFFER WITH 100 MM REMARK 210 NACL; PH 6.8; 90% H2O, 10% D2O; REMARK 210 1.8 MM TAU14, 5 MM PHOSPHATE REMARK 210 BUFFER WITH 100 MM NACL; PH 6.8; REMARK 210 90% H2O, 10% D2O; 1.8 MM TAU14, REMARK 210 5 MM PHOSPHATE BUFFER WITH 100 REMARK 210 MM NACL; PD 7.0; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; HNCACB; REMARK 210 CACB(CO)NH; HNCO; HN(CO)CA; HNHA; REMARK 210 3D_13C-SEPARATED_NOESY; 13C- REMARK 210 HSQC; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5, PROSA 6.1, CARA 1.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : THE SUBMITTED CONFORMER MODELS REMARK 210 ARE THE 20 STRUCTURES WITH THE REMARK 210 LOWEST ENERGY VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 TYR A 110 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 11 ARG A 60 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 13 TYR A 110 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 4 -81.09 -125.54 REMARK 500 1 GLU A 5 7.69 53.77 REMARK 500 1 LYS A 8 -109.28 50.82 REMARK 500 1 THR A 9 79.40 -113.96 REMARK 500 1 PRO A 36 -104.79 -80.54 REMARK 500 1 LYS A 37 -66.43 -130.22 REMARK 500 1 ASN A 53 13.56 -143.56 REMARK 500 1 ASN A 125 158.94 57.48 REMARK 500 1 ASN A 126 -46.45 -147.59 REMARK 500 2 LEU A 4 -80.65 -94.90 REMARK 500 2 GLU A 5 159.08 63.01 REMARK 500 2 HIS A 6 63.99 171.13 REMARK 500 2 LYS A 8 -84.68 61.09 REMARK 500 2 SER A 34 60.27 32.27 REMARK 500 2 PRO A 36 -94.26 -67.45 REMARK 500 2 LYS A 37 -42.25 -143.80 REMARK 500 2 ASN A 53 38.10 -148.09 REMARK 500 2 ASN A 125 60.39 34.98 REMARK 500 3 LEU A 4 -56.90 -154.09 REMARK 500 3 GLU A 7 -49.92 -134.03 REMARK 500 3 SER A 34 80.27 56.79 REMARK 500 3 PRO A 36 -101.04 -81.92 REMARK 500 3 ASN A 53 17.77 -145.78 REMARK 500 3 ASN A 96 85.92 -155.69 REMARK 500 3 PRO A 97 -86.81 -77.68 REMARK 500 3 ALA A 98 33.29 -160.73 REMARK 500 3 ASN A 126 146.54 178.86 REMARK 500 3 ILE A 127 -29.87 -155.88 REMARK 500 4 LYS A 2 108.95 -54.52 REMARK 500 4 LEU A 4 -95.48 -111.29 REMARK 500 4 GLU A 5 137.30 61.72 REMARK 500 4 HIS A 6 -56.59 -141.30 REMARK 500 4 GLU A 7 29.85 -163.23 REMARK 500 4 PRO A 36 -78.07 -59.04 REMARK 500 4 LYS A 37 -47.69 -156.86 REMARK 500 4 ASN A 53 28.08 -146.87 REMARK 500 4 ASN A 125 -84.22 53.96 REMARK 500 5 ALA A 3 90.74 -166.30 REMARK 500 5 LEU A 4 55.75 -149.33 REMARK 500 5 HIS A 6 -3.43 -148.01 REMARK 500 5 PRO A 36 -78.51 -56.72 REMARK 500 5 LYS A 37 -55.55 -156.69 REMARK 500 5 ASN A 53 23.36 -145.38 REMARK 500 5 ASN A 125 81.89 27.26 REMARK 500 5 ILE A 127 -56.67 -125.51 REMARK 500 6 GLU A 7 24.60 -143.70 REMARK 500 6 LYS A 8 109.21 -8.32 REMARK 500 6 THR A 9 72.22 42.05 REMARK 500 6 PRO A 36 -83.93 -61.83 REMARK 500 6 LYS A 37 -53.59 -152.90 REMARK 500 REMARK 500 THIS ENTRY HAS 190 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 1 LYS A 2 1 136.11 REMARK 500 MET A 1 LYS A 2 12 147.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 23 0.08 SIDE CHAIN REMARK 500 1 ARG A 100 0.08 SIDE CHAIN REMARK 500 3 ARG A 64 0.10 SIDE CHAIN REMARK 500 4 ARG A 60 0.08 SIDE CHAIN REMARK 500 4 ARG A 69 0.08 SIDE CHAIN REMARK 500 5 ARG A 69 0.09 SIDE CHAIN REMARK 500 5 ARG A 106 0.10 SIDE CHAIN REMARK 500 6 ARG A 106 0.08 SIDE CHAIN REMARK 500 7 ARG A 100 0.08 SIDE CHAIN REMARK 500 7 TYR A 110 0.11 SIDE CHAIN REMARK 500 9 ARG A 60 0.08 SIDE CHAIN REMARK 500 10 ARG A 106 0.11 SIDE CHAIN REMARK 500 12 ARG A 106 0.19 SIDE CHAIN REMARK 500 13 TYR A 110 0.07 SIDE CHAIN REMARK 500 14 ARG A 23 0.08 SIDE CHAIN REMARK 500 14 ARG A 106 0.09 SIDE CHAIN REMARK 500 16 ARG A 60 0.08 SIDE CHAIN REMARK 500 17 ARG A 106 0.10 SIDE CHAIN REMARK 500 17 ARG A 118 0.08 SIDE CHAIN REMARK 500 18 ARG A 64 0.11 SIDE CHAIN REMARK 500 19 ARG A 60 0.12 SIDE CHAIN REMARK 500 20 ARG A 64 0.08 SIDE CHAIN REMARK 500 20 ARG A 106 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2AYA A 2 128 UNP P06710 DPO3X_ECOLI 499 625 SEQADV 2AYA MET A 1 UNP P06710 CLONING ARTIFACT SEQRES 1 A 128 MET LYS ALA LEU GLU HIS GLU LYS THR PRO GLU LEU ALA SEQRES 2 A 128 ALA LYS LEU ALA ALA GLU ALA ILE GLU ARG ASP PRO TRP SEQRES 3 A 128 ALA ALA GLN VAL SER GLN LEU SER LEU PRO LYS LEU VAL SEQRES 4 A 128 GLU GLN VAL ALA LEU ASN ALA TRP LYS GLU GLU SER ASP SEQRES 5 A 128 ASN ALA VAL CYS LEU HIS LEU ARG SER SER GLN ARG HIS SEQRES 6 A 128 LEU ASN ASN ARG GLY ALA GLN GLN LYS LEU ALA GLU ALA SEQRES 7 A 128 LEU SER MET LEU LYS GLY SER THR VAL GLU LEU THR ILE SEQRES 8 A 128 VAL GLU ASP ASP ASN PRO ALA VAL ARG THR PRO LEU GLU SEQRES 9 A 128 TRP ARG GLN ALA ILE TYR GLU GLU LYS LEU ALA GLN ALA SEQRES 10 A 128 ARG GLU SER ILE ILE ALA ASP ASN ASN ILE GLN HELIX 1 1 THR A 9 ASP A 24 1 16 HELIX 2 2 ASP A 24 SER A 34 1 11 HELIX 3 3 LYS A 37 ASN A 45 1 9 HELIX 4 4 SER A 61 ARG A 64 5 4 HELIX 5 5 ASN A 68 GLY A 84 1 17 HELIX 6 6 THR A 101 ASP A 124 1 24 SHEET 1 A 3 ALA A 46 GLU A 50 0 SHEET 2 A 3 ALA A 54 LEU A 59 -1 O HIS A 58 N TRP A 47 SHEET 3 A 3 GLU A 88 GLU A 93 1 O VAL A 92 N LEU A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1