HEADER TRANSCRIPTION/DNA 07-SEP-05 2AYG TITLE CRYSTAL STRUCTURE OF HPV6A E2 DNA BINDING DOMAIN BOUND TO AN 18 BASE TITLE 2 PAIR DNA TARGET COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*CP*AP*AP*CP*CP*GP*AP*AP*TP*TP*CP*GP*GP*TP*TP*GP*C) COMPND 3 -3'; COMPND 4 CHAIN: C, D; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: REGULATORY PROTEIN E2; COMPND 8 CHAIN: A, B; COMPND 9 FRAGMENT: C TERMINAL DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS TYPE 6A; SOURCE 5 ORGANISM_TAXID: 37122; SOURCE 6 GENE: E2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PKK223-3 KEYWDS BETA BARREL, DOUBLE HELIX, PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.HOOLEY,R.L.BRADY,K.GASTON REVDAT 4 23-AUG-23 2AYG 1 SEQADV REVDAT 3 24-FEB-09 2AYG 1 VERSN REVDAT 2 03-OCT-06 2AYG 1 JRNL REVDAT 1 22-AUG-06 2AYG 0 JRNL AUTH E.HOOLEY,V.FAIRWEATHER,A.R.CLARKE,K.GASTON,R.L.BRADY JRNL TITL THE RECOGNITION OF LOCAL DNA CONFORMATION BY THE HUMAN JRNL TITL 2 PAPILLOMAVIRUS TYPE 6 E2 PROTEIN. JRNL REF NUCLEIC ACIDS RES. V. 34 3897 2006 JRNL REFN ISSN 0305-1048 JRNL PMID 16914454 JRNL DOI 10.1093/NAR/GKL466 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 6085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 278 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1444 REMARK 3 NUCLEIC ACID ATOMS : 732 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.17000 REMARK 3 B22 (A**2) : 4.17000 REMARK 3 B33 (A**2) : -6.25000 REMARK 3 B12 (A**2) : 2.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.557 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.476 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.744 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2305 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3275 ; 2.322 ; 2.333 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 172 ;12.000 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;36.469 ;22.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 254 ;22.032 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;22.469 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 358 ; 0.260 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1498 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1231 ; 0.278 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1439 ; 0.325 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 68 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.029 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 890 ; 0.744 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1429 ; 1.376 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1830 ; 1.203 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1846 ; 2.085 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 283 A 303 1 REMARK 3 1 B 283 B 303 1 REMARK 3 2 A 307 A 319 1 REMARK 3 2 B 307 B 319 1 REMARK 3 3 A 329 A 360 1 REMARK 3 3 B 329 B 360 1 REMARK 3 4 A 364 A 366 1 REMARK 3 4 B 364 B 366 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 588 ; NULL ; NULL REMARK 3 TIGHT THERMAL 1 A (A**2): 588 ; NULL ; NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2AYG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : SI CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6087 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 63.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1JJ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CHLORIDE, HEPES, AMMONIUM REMARK 280 SULPHATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.41233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.82467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.61850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 91.03083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.20617 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A PROTEIN DIMER BOUND TO DOUBLE REMARK 300 STRANDED DNA REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DG C 1 O5' REMARK 480 LYS A 327 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 1 O5' DG C 1 C5' 0.319 REMARK 500 DC C 2 O3' DC C 2 C3' -0.071 REMARK 500 DC C 12 O3' DC C 12 C3' -0.043 REMARK 500 DC D 2 O3' DC D 2 C3' -0.084 REMARK 500 DC D 12 O3' DC D 12 C3' -0.067 REMARK 500 LYS A 327 CB LYS A 327 CG -0.216 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 1 O5' - C5' - C4' ANGL. DEV. = -7.5 DEGREES REMARK 500 DC C 2 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DC C 2 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 DG C 7 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA C 8 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DA C 8 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 DA C 9 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT C 10 N3 - C2 - O2 ANGL. DEV. = -3.7 DEGREES REMARK 500 DT C 10 C6 - C5 - C7 ANGL. DEV. = -5.6 DEGREES REMARK 500 DT C 10 C3' - O3' - P ANGL. DEV. = 10.1 DEGREES REMARK 500 DT C 11 O4' - C1' - N1 ANGL. DEV. = -5.2 DEGREES REMARK 500 DC C 12 O4' - C1' - N1 ANGL. DEV. = -5.0 DEGREES REMARK 500 DG C 13 C3' - O3' - P ANGL. DEV. = 9.0 DEGREES REMARK 500 DG C 14 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DG C 14 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DT C 16 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DT C 16 C3' - C2' - C1' ANGL. DEV. = -11.1 DEGREES REMARK 500 DT C 16 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT C 16 C6 - C5 - C7 ANGL. DEV. = -5.0 DEGREES REMARK 500 DG D 1 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG D 1 C3' - C2' - C1' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG D 1 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 DC D 2 O4' - C4' - C3' ANGL. DEV. = -3.9 DEGREES REMARK 500 DC D 2 C1' - O4' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 DC D 2 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA D 3 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC D 5 C3' - O3' - P ANGL. DEV. = 9.8 DEGREES REMARK 500 DC D 6 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DG D 7 C3' - O3' - P ANGL. DEV. = 10.5 DEGREES REMARK 500 DA D 8 C3' - O3' - P ANGL. DEV. = 9.2 DEGREES REMARK 500 DA D 9 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA D 9 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DT D 10 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DT D 11 O4' - C1' - N1 ANGL. DEV. = -7.0 DEGREES REMARK 500 DT D 11 C6 - C5 - C7 ANGL. DEV. = -11.8 DEGREES REMARK 500 DT D 11 C3' - O3' - P ANGL. DEV. = 9.3 DEGREES REMARK 500 DC D 12 O4' - C1' - N1 ANGL. DEV. = -6.5 DEGREES REMARK 500 DC D 12 N1 - C2 - O2 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG D 13 C3' - O3' - P ANGL. DEV. = 9.6 DEGREES REMARK 500 DG D 14 C5' - C4' - O4' ANGL. DEV. = 7.1 DEGREES REMARK 500 DG D 14 O4' - C1' - N9 ANGL. DEV. = 7.6 DEGREES REMARK 500 DG D 14 N1 - C6 - O6 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT D 15 O4' - C1' - C2' ANGL. DEV. = 3.9 DEGREES REMARK 500 DT D 15 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT D 15 C3' - O3' - P ANGL. DEV. = 9.3 DEGREES REMARK 500 DT D 16 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT D 16 C4 - C5 - C7 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT D 16 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 DC D 18 C1' - O4' - C4' ANGL. DEV. = -7.5 DEGREES REMARK 500 DC D 18 C3' - C2' - C1' ANGL. DEV. = -6.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 55 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 282 55.77 -93.85 REMARK 500 ASP A 304A -146.40 71.76 REMARK 500 LYS A 305 -61.15 128.79 REMARK 500 ASP A 311 -83.85 -77.06 REMARK 500 SER A 321 -105.76 -145.21 REMARK 500 LYS A 323 -54.21 44.35 REMARK 500 SER A 337 153.96 173.32 REMARK 500 SER A 362 78.23 48.31 REMARK 500 MET A 363 -69.47 143.04 REMARK 500 SER B 282 38.14 -78.94 REMARK 500 LYS B 305 -25.27 -170.16 REMARK 500 ASP B 311 -83.76 -80.14 REMARK 500 PRO B 322 -43.06 -12.94 REMARK 500 LYS B 323 -56.67 -137.78 REMARK 500 ALA B 324 -127.86 -112.23 REMARK 500 HIS B 326 158.56 177.75 REMARK 500 SER B 337 154.94 173.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 304 ASP A 304A 83.83 REMARK 500 PHE A 360 MET A 361 135.96 REMARK 500 MET A 361 SER A 362 32.65 REMARK 500 PRO B 322 LYS B 323 -53.00 REMARK 500 LYS B 323 ALA B 324 -35.64 REMARK 500 ALA B 324 PRO B 325 137.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R8H RELATED DB: PDB REMARK 900 SAME PROTEIN, NO DNA BOUND REMARK 900 RELATED ID: 2AYB RELATED DB: PDB REMARK 900 RELATED ID: 2AYE RELATED DB: PDB DBREF 2AYG A 281 366 UNP Q84294 VE2_HPV6A 282 368 DBREF 2AYG B 281 366 UNP Q84294 VE2_HPV6A 282 368 DBREF 2AYG C 1 18 PDB 2AYG 2AYG 1 18 DBREF 2AYG D 1 18 PDB 2AYG 2AYG 1 18 SEQADV 2AYG MET A 361 UNP Q84294 LEU 365 VARIANT SEQADV 2AYG MET B 361 UNP Q84294 LEU 365 VARIANT SEQRES 1 C 18 DG DC DA DA DC DC DG DA DA DT DT DC DG SEQRES 2 C 18 DG DT DT DG DC SEQRES 1 D 18 DG DC DA DA DC DC DG DA DA DT DT DC DG SEQRES 2 D 18 DG DT DT DG DC SEQRES 1 A 87 SER SER ALA THR PRO ILE VAL GLN PHE GLN GLY GLU SER SEQRES 2 A 87 ASN CYS LEU LYS CYS PHE ARG TYR ARG LEU ASN ASP LYS SEQRES 3 A 87 HIS ARG HIS LEU PHE ASP LEU ILE SER SER THR TRP HIS SEQRES 4 A 87 TRP ALA SER PRO LYS ALA PRO HIS LYS HIS ALA ILE VAL SEQRES 5 A 87 THR VAL THR TYR HIS SER GLU GLU GLN ARG GLN GLN PHE SEQRES 6 A 87 LEU ASN VAL VAL LYS ILE PRO PRO THR ILE ARG HIS LYS SEQRES 7 A 87 LEU GLY PHE MET SER MET HIS LEU LEU SEQRES 1 B 87 SER SER ALA THR PRO ILE VAL GLN PHE GLN GLY GLU SER SEQRES 2 B 87 ASN CYS LEU LYS CYS PHE ARG TYR ARG LEU ASN ASP LYS SEQRES 3 B 87 HIS ARG HIS LEU PHE ASP LEU ILE SER SER THR TRP HIS SEQRES 4 B 87 TRP ALA SER PRO LYS ALA PRO HIS LYS HIS ALA ILE VAL SEQRES 5 B 87 THR VAL THR TYR HIS SER GLU GLU GLN ARG GLN GLN PHE SEQRES 6 B 87 LEU ASN VAL VAL LYS ILE PRO PRO THR ILE ARG HIS LYS SEQRES 7 B 87 LEU GLY PHE MET SER MET HIS LEU LEU FORMUL 5 HOH *19(H2 O) HELIX 1 1 GLU A 292 ASP A 304A 1 14 HELIX 2 2 HIS A 306 PHE A 310 5 5 HELIX 3 3 SER A 337 VAL A 348 1 12 HELIX 4 4 GLU B 292 ASP B 304A 1 14 HELIX 5 5 HIS B 306 PHE B 310 5 5 HELIX 6 6 SER B 337 VAL B 348 1 12 HELIX 7 7 HIS B 364 LEU B 366 5 3 SHEET 1 A 3 ALA A 329 THR A 334 0 SHEET 2 A 3 THR A 284 GLY A 291 -1 N VAL A 287 O VAL A 333 SHEET 3 A 3 ARG A 355 MET A 361 -1 O MET A 361 N THR A 284 SHEET 1 B 3 ALA B 329 THR B 334 0 SHEET 2 B 3 ALA B 283 GLY B 291 -1 N VAL B 287 O VAL B 333 SHEET 3 B 3 ARG B 355 SER B 362 -1 O GLY B 359 N ILE B 286 CISPEP 1 ASP A 304A LYS A 305 0 -13.96 CISPEP 2 SER A 321 PRO A 322 0 -0.83 CISPEP 3 PRO A 322 LYS A 323 0 -5.25 CISPEP 4 SER A 362 MET A 363 0 -1.42 CRYST1 73.449 73.449 109.237 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013620 0.007860 0.000000 0.00000 SCALE2 0.000000 0.015720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009150 0.00000