HEADER HYDROLASE 07-SEP-05 2AYO TITLE STRUCTURE OF USP14 BOUND TO UBQUITIN ALDEHYDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UBIQUITIN THIOLESTERASE 14, UBIQUITIN-SPECIFIC PROCESSING COMPND 5 PROTEASE 14, DEUBIQUITINATING ENZYME 14; COMPND 6 EC: 3.1.2.15; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: UBIQUITIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP14, TGT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS DEUBIQUITINATING ENZYME, DUB, USP14, PROTEASOME, ENZYME MECHANISM, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HU,P.LI,P.D.JEFFREY,Y.SHI REVDAT 5 15-NOV-23 2AYO 1 REMARK REVDAT 4 23-AUG-23 2AYO 1 SEQADV LINK REVDAT 3 24-FEB-09 2AYO 1 VERSN REVDAT 2 15-NOV-05 2AYO 1 JRNL REVDAT 1 18-OCT-05 2AYO 0 JRNL AUTH M.HU,P.LI,L.SONG,P.D.JEFFREY,T.A.CHENOVA,K.D.WILKINSON, JRNL AUTH 2 R.E.COHEN,Y.SHI JRNL TITL STRUCTURE AND MECHANISMS OF THE PROTEASOME-ASSOCIATED JRNL TITL 2 DEUBIQUITINATING ENZYME USP14. JRNL REF EMBO J. V. 24 3747 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 16211010 JRNL DOI 10.1038/SJ.EMBOJ.7600832 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 99.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.290 REMARK 3 FREE R VALUE : 0.330 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 573 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3411 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.910 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11099 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY: 2AYN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, CALSIUM CHLORIDE, PEG1000, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 15.23667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.47333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.47333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 15.23667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.71000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 90 REMARK 465 MET A 91 REMARK 465 THR A 92 REMARK 465 GLU A 93 REMARK 465 GLU A 94 REMARK 465 GLN A 95 REMARK 465 LEU A 96 REMARK 465 SER A 221 REMARK 465 VAL A 222 REMARK 465 LYS A 223 REMARK 465 GLU A 224 REMARK 465 THR A 225 REMARK 465 ASP A 226 REMARK 465 SER A 227 REMARK 465 SER A 228 REMARK 465 SER A 229 REMARK 465 ALA A 230 REMARK 465 SER A 231 REMARK 465 ALA A 232 REMARK 465 ALA A 233 REMARK 465 LYS A 379 REMARK 465 LYS A 380 REMARK 465 VAL A 381 REMARK 465 ASN A 382 REMARK 465 GLN A 383 REMARK 465 GLN A 384 REMARK 465 PRO A 385 REMARK 465 ASN A 386 REMARK 465 THR A 387 REMARK 465 SER A 388 REMARK 465 ASP A 389 REMARK 465 LYS A 390 REMARK 465 LYS A 391 REMARK 465 SER A 392 REMARK 465 SER A 393 REMARK 465 PRO A 394 REMARK 465 GLN A 395 REMARK 465 LYS A 396 REMARK 465 ARG A 483 REMARK 465 VAL A 484 REMARK 465 GLU A 485 REMARK 465 ILE A 486 REMARK 465 MET A 487 REMARK 465 GLU A 488 REMARK 465 GLU A 489 REMARK 465 GLU A 490 REMARK 465 SER A 491 REMARK 465 GLU A 492 REMARK 465 GLN A 493 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 397 CG CD OE1 OE2 REMARK 470 VAL A 398 CG1 CG2 REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 TYR A 400 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 401 CG CD OE1 OE2 REMARK 470 PRO A 402 CG CD REMARK 470 PHE A 403 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 404 OG REMARK 470 PHE A 405 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 407 CG OD1 OD2 REMARK 470 ASP A 408 CG OD1 OD2 REMARK 470 ILE A 409 CG1 CG2 CD1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 24 CG CD OE1 OE2 REMARK 480 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 435 O LEU B 73 2.13 REMARK 500 O CYS A 121 OG SER A 124 2.17 REMARK 500 O PRO A 320 OH TYR A 417 2.18 REMARK 500 NH2 ARG A 292 CE1 HIS B 68 2.19 REMARK 500 O SER A 259 N GLU A 261 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 101 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 LEU A 102 N - CA - C ANGL. DEV. = 24.1 DEGREES REMARK 500 PRO A 103 C - N - CA ANGL. DEV. = 13.2 DEGREES REMARK 500 PRO A 103 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 PRO A 183 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO A 402 N - CA - CB ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 99 -134.24 -153.25 REMARK 500 LEU A 102 -75.31 -149.84 REMARK 500 PRO A 103 106.24 -23.63 REMARK 500 ALA A 117 -73.30 -58.19 REMARK 500 ASP A 130 -34.61 -39.12 REMARK 500 LEU A 139 36.21 -71.48 REMARK 500 SER A 142 168.05 157.69 REMARK 500 GLU A 144 24.95 94.84 REMARK 500 MET A 145 78.27 -178.52 REMARK 500 ALA A 146 18.26 156.40 REMARK 500 ASP A 160 -7.92 -57.80 REMARK 500 SER A 161 -61.42 -96.39 REMARK 500 ASP A 163 4.44 -62.80 REMARK 500 LYS A 164 58.35 -149.20 REMARK 500 SER A 166 -22.27 -157.95 REMARK 500 SER A 167 -105.47 -59.92 REMARK 500 SER A 168 89.50 172.25 REMARK 500 ILE A 173 -78.85 -45.54 REMARK 500 ALA A 181 -86.26 -36.50 REMARK 500 GLN A 184 -25.01 -38.82 REMARK 500 ALA A 186 130.35 166.32 REMARK 500 GLU A 187 128.19 169.56 REMARK 500 GLU A 190 -85.13 11.66 REMARK 500 GLN A 193 117.70 -178.77 REMARK 500 TYR A 194 104.56 87.69 REMARK 500 LYS A 237 -123.90 -120.92 REMARK 500 SER A 240 107.19 179.32 REMARK 500 SER A 259 -54.23 -1.73 REMARK 500 GLU A 260 -61.21 5.74 REMARK 500 GLU A 261 73.35 95.57 REMARK 500 GLU A 263 110.28 -32.62 REMARK 500 GLN A 271 147.91 175.86 REMARK 500 GLN A 280 7.10 -57.14 REMARK 500 LEU A 285 -51.89 -24.28 REMARK 500 LEU A 291 6.00 -53.22 REMARK 500 THR A 303 41.17 -71.92 REMARK 500 LEU A 304 -40.21 -171.93 REMARK 500 GLN A 305 71.35 63.45 REMARK 500 ARG A 306 155.06 167.20 REMARK 500 ILE A 316 97.69 -64.09 REMARK 500 MET A 327 90.68 -58.01 REMARK 500 VAL A 328 94.36 -63.83 REMARK 500 LYS A 333 -159.95 -131.63 REMARK 500 LYS A 335 152.03 163.93 REMARK 500 SER A 337 -88.74 165.55 REMARK 500 LEU A 343 50.32 -93.69 REMARK 500 GLU A 356 28.66 -57.57 REMARK 500 LEU A 357 12.98 -144.58 REMARK 500 CYS A 358 -146.50 -114.37 REMARK 500 PHE A 369 -68.41 -92.23 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 150 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AYN RELATED DB: PDB DBREF 2AYO A 90 493 UNP P54578 UBP14_HUMAN 90 493 DBREF 2AYO B 1 76 UNP P62988 UBIQ_HUMAN 1 76 SEQADV 2AYO GLZ B 76 UNP P62988 GLY 76 MODIFIED RESIDUE SEQRES 1 A 404 ASP MET THR GLU GLU GLN LEU ALA SER ALA MET GLU LEU SEQRES 2 A 404 PRO CYS GLY LEU THR ASN LEU GLY ASN THR CYS TYR MET SEQRES 3 A 404 ASN ALA THR VAL GLN CYS ILE ARG SER VAL PRO GLU LEU SEQRES 4 A 404 LYS ASP ALA LEU LYS ARG TYR ALA GLY ALA LEU ARG ALA SEQRES 5 A 404 SER GLY GLU MET ALA SER ALA GLN TYR ILE THR ALA ALA SEQRES 6 A 404 LEU ARG ASP LEU PHE ASP SER MET ASP LYS THR SER SER SEQRES 7 A 404 SER ILE PRO PRO ILE ILE LEU LEU GLN PHE LEU HIS MET SEQRES 8 A 404 ALA PHE PRO GLN PHE ALA GLU LYS GLY GLU GLN GLY GLN SEQRES 9 A 404 TYR LEU GLN GLN ASP ALA ASN GLU CYS TRP ILE GLN MET SEQRES 10 A 404 MET ARG VAL LEU GLN GLN LYS LEU GLU ALA ILE GLU ASP SEQRES 11 A 404 ASP SER VAL LYS GLU THR ASP SER SER SER ALA SER ALA SEQRES 12 A 404 ALA THR PRO SER LYS LYS LYS SER LEU ILE ASP GLN PHE SEQRES 13 A 404 PHE GLY VAL GLU PHE GLU THR THR MET LYS CYS THR GLU SEQRES 14 A 404 SER GLU GLU GLU GLU VAL THR LYS GLY LYS GLU ASN GLN SEQRES 15 A 404 LEU GLN LEU SER CYS PHE ILE ASN GLN GLU VAL LYS TYR SEQRES 16 A 404 LEU PHE THR GLY LEU LYS LEU ARG LEU GLN GLU GLU ILE SEQRES 17 A 404 THR LYS GLN SER PRO THR LEU GLN ARG ASN ALA LEU TYR SEQRES 18 A 404 ILE LYS SER SER LYS ILE SER ARG LEU PRO ALA TYR LEU SEQRES 19 A 404 THR ILE GLN MET VAL ARG PHE PHE TYR LYS GLU LYS GLU SEQRES 20 A 404 SER VAL ASN ALA LYS VAL LEU LYS ASP VAL LYS PHE PRO SEQRES 21 A 404 LEU MET LEU ASP MET TYR GLU LEU CYS THR PRO GLU LEU SEQRES 22 A 404 GLN GLU LYS MET VAL SER PHE ARG SER LYS PHE LYS ASP SEQRES 23 A 404 LEU GLU ASP LYS LYS VAL ASN GLN GLN PRO ASN THR SER SEQRES 24 A 404 ASP LYS LYS SER SER PRO GLN LYS GLU VAL LYS TYR GLU SEQRES 25 A 404 PRO PHE SER PHE ALA ASP ASP ILE GLY SER ASN ASN CYS SEQRES 26 A 404 GLY TYR TYR ASP LEU GLN ALA VAL LEU THR HIS GLN GLY SEQRES 27 A 404 ARG SER SER SER SER GLY HIS TYR VAL SER TRP VAL LYS SEQRES 28 A 404 ARG LYS GLN ASP GLU TRP ILE LYS PHE ASP ASP ASP LYS SEQRES 29 A 404 VAL SER ILE VAL THR PRO GLU ASP ILE LEU ARG LEU SER SEQRES 30 A 404 GLY GLY GLY ASP TRP HIS ILE ALA TYR VAL LEU LEU TYR SEQRES 31 A 404 GLY PRO ARG ARG VAL GLU ILE MET GLU GLU GLU SER GLU SEQRES 32 A 404 GLN SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLZ MODRES 2AYO GLZ B 76 GLY AMINO-ACETALDEHYDE HET GLZ B 76 4 HETNAM GLZ AMINO-ACETALDEHYDE FORMUL 2 GLZ C2 H5 N O HELIX 1 1 THR A 112 SER A 124 1 13 HELIX 2 2 VAL A 125 ARG A 134 1 10 HELIX 3 3 SER A 147 ASP A 163 1 17 HELIX 4 4 ILE A 172 PHE A 182 1 11 HELIX 5 5 ASP A 198 LEU A 214 1 17 HELIX 6 6 SER A 240 PHE A 246 1 7 HELIX 7 7 TYR A 284 LEU A 289 1 6 HELIX 8 8 MET A 354 CYS A 358 5 5 HELIX 9 9 GLU A 361 SER A 371 1 11 HELIX 10 10 THR A 458 LEU A 463 1 6 HELIX 11 11 THR B 22 GLY B 35 1 14 HELIX 12 12 PRO B 37 GLN B 41 5 5 SHEET 1 A 4 THR A 265 GLU A 269 0 SHEET 2 A 4 GLU A 249 CYS A 256 -1 N THR A 252 O GLY A 267 SHEET 3 A 4 ASN A 307 ARG A 318 -1 O ILE A 311 N LYS A 255 SHEET 4 A 4 GLU A 296 GLN A 300 -1 N ILE A 297 O TYR A 310 SHEET 1 B 5 GLN A 273 SER A 275 0 SHEET 2 B 5 LEU A 323 GLN A 326 1 O GLN A 326 N LEU A 274 SHEET 3 B 5 VAL A 476 GLY A 480 -1 O TYR A 479 N LEU A 323 SHEET 4 B 5 TYR A 417 GLY A 427 -1 N ASP A 418 O GLY A 480 SHEET 5 B 5 MET A 351 LEU A 352 -1 N LEU A 352 O TYR A 417 SHEET 1 C 7 GLN A 273 SER A 275 0 SHEET 2 C 7 LEU A 323 GLN A 326 1 O GLN A 326 N LEU A 274 SHEET 3 C 7 VAL A 476 GLY A 480 -1 O TYR A 479 N LEU A 323 SHEET 4 C 7 TYR A 417 GLY A 427 -1 N ASP A 418 O GLY A 480 SHEET 5 C 7 GLY A 433 LYS A 440 -1 O VAL A 436 N THR A 424 SHEET 6 C 7 TRP A 446 ASP A 450 -1 O ILE A 447 N VAL A 439 SHEET 7 C 7 LYS A 453 VAL A 457 -1 O LYS A 453 N ASP A 450 SHEET 1 D 5 THR B 12 GLU B 16 0 SHEET 2 D 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 D 5 THR B 66 VAL B 70 1 O LEU B 67 N PHE B 4 SHEET 4 D 5 ARG B 42 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 D 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK C GLY B 75 N GLZ B 76 1555 1555 1.32 CRYST1 183.931 183.931 45.710 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005437 0.003139 0.000000 0.00000 SCALE2 0.000000 0.006278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021877 0.00000