HEADER CHAPERONE 08-SEP-05 2AYU TITLE THE STRUCTURE OF NUCLEOSOME ASSEMBLY PROTEIN SUGGESTS A MECHANISM FOR TITLE 2 HISTONE BINDING AND SHUTTLING COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSOME ASSEMBLY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3 KEYWDS NUCLEOSOME ASSEMBLY PROTEIN 1 (NAP1), HISTONE CHAPERONE, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.PARK,K.LUGER REVDAT 5 13-NOV-24 2AYU 1 REMARK REVDAT 4 13-JUL-11 2AYU 1 VERSN REVDAT 3 24-FEB-09 2AYU 1 VERSN REVDAT 2 14-FEB-06 2AYU 1 JRNL REVDAT 1 07-FEB-06 2AYU 0 JRNL AUTH Y.J.PARK,K.LUGER JRNL TITL THE STRUCTURE OF NUCLEOSOME ASSEMBLY PROTEIN 1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 1248 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16432217 JRNL DOI 10.1073/PNAS.0508002103 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2323 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : 1.443 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 5.0.1; 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1; 0.9796, 0.9795, 0.9642 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MONO-AMMONIUM DIHYDROGEN PHOSPHATE, PH REMARK 280 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.05000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.35000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.07500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.35000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.02500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.35000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 132.07500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.35000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.02500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 86.70000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 86.70000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 88.05000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 PRO A 4 REMARK 465 ILE A 5 REMARK 465 ARG A 6 REMARK 465 THR A 7 REMARK 465 LYS A 8 REMARK 465 PRO A 9 REMARK 465 LYS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 MET A 13 REMARK 465 GLN A 14 REMARK 465 ILE A 15 REMARK 465 ASP A 16 REMARK 465 ASN A 17 REMARK 465 ALA A 18 REMARK 465 PRO A 19 REMARK 465 THR A 20 REMARK 465 PRO A 21 REMARK 465 HIS A 22 REMARK 465 ASN A 23 REMARK 465 THR A 24 REMARK 465 PRO A 25 REMARK 465 ALA A 26 REMARK 465 SER A 27 REMARK 465 VAL A 28 REMARK 465 LEU A 29 REMARK 465 ASN A 30 REMARK 465 PRO A 31 REMARK 465 SER A 32 REMARK 465 TYR A 33 REMARK 465 LEU A 34 REMARK 465 LYS A 35 REMARK 465 ASN A 36 REMARK 465 GLY A 37 REMARK 465 ASN A 38 REMARK 465 PRO A 39 REMARK 465 VAL A 40 REMARK 465 ARG A 41 REMARK 465 ALA A 42 REMARK 465 GLN A 43 REMARK 465 ALA A 44 REMARK 465 GLN A 45 REMARK 465 GLU A 46 REMARK 465 GLN A 47 REMARK 465 ASP A 48 REMARK 465 ASP A 49 REMARK 465 LYS A 50 REMARK 465 ILE A 51 REMARK 465 GLY A 52 REMARK 465 THR A 53 REMARK 465 ILE A 54 REMARK 465 ASN A 55 REMARK 465 GLU A 56 REMARK 465 GLU A 57 REMARK 465 ASP A 58 REMARK 465 ILE A 59 REMARK 465 LEU A 60 REMARK 465 ALA A 61 REMARK 465 ASN A 62 REMARK 465 GLN A 63 REMARK 465 PRO A 64 REMARK 465 LEU A 65 REMARK 465 LEU A 66 REMARK 465 LEU A 67 REMARK 465 GLN A 68 REMARK 465 SER A 69 REMARK 465 LYS A 172 REMARK 465 ALA A 173 REMARK 465 GLN A 174 REMARK 465 ASN A 175 REMARK 465 ASP A 176 REMARK 465 SER A 177 REMARK 465 GLU A 178 REMARK 465 GLU A 179 REMARK 465 GLU A 180 REMARK 465 ARG A 293 REMARK 465 ASN A 294 REMARK 465 LYS A 295 REMARK 465 THR A 296 REMARK 465 THR A 297 REMARK 465 LYS A 298 REMARK 465 GLN A 299 REMARK 465 VAL A 300 REMARK 465 ARG A 301 REMARK 465 GLU A 371 REMARK 465 ASP A 372 REMARK 465 GLU A 373 REMARK 465 GLU A 374 REMARK 465 GLU A 375 REMARK 465 ALA A 376 REMARK 465 ASP A 377 REMARK 465 GLU A 378 REMARK 465 ASP A 379 REMARK 465 GLU A 380 REMARK 465 ASP A 381 REMARK 465 GLU A 382 REMARK 465 GLU A 383 REMARK 465 GLU A 384 REMARK 465 ASP A 385 REMARK 465 ASP A 386 REMARK 465 ASP A 387 REMARK 465 HIS A 388 REMARK 465 GLY A 389 REMARK 465 LEU A 390 REMARK 465 GLU A 391 REMARK 465 ASP A 392 REMARK 465 ASP A 393 REMARK 465 ASP A 394 REMARK 465 GLY A 395 REMARK 465 GLU A 396 REMARK 465 SER A 397 REMARK 465 ALA A 398 REMARK 465 GLU A 399 REMARK 465 GLU A 400 REMARK 465 GLN A 401 REMARK 465 ASP A 402 REMARK 465 ASP A 403 REMARK 465 PHE A 404 REMARK 465 ALA A 405 REMARK 465 GLY A 406 REMARK 465 ARG A 407 REMARK 465 PRO A 408 REMARK 465 GLU A 409 REMARK 465 GLN A 410 REMARK 465 ALA A 411 REMARK 465 PRO A 412 REMARK 465 GLU A 413 REMARK 465 CYS A 414 REMARK 465 LYS A 415 REMARK 465 GLN A 416 REMARK 465 SER A 417 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 328 N GLU A 329 1.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SD MET A 117 SD MET A 117 8665 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 197 C ILE A 198 N -0.145 REMARK 500 ILE A 198 CB ILE A 198 CG1 0.656 REMARK 500 ILE A 198 CB ILE A 198 CG2 -0.529 REMARK 500 VAL A 199 CB VAL A 199 CG2 -0.285 REMARK 500 GLU A 328 C GLU A 329 N -0.324 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 197 CA - N - CD ANGL. DEV. = -13.2 DEGREES REMARK 500 PRO A 197 O - C - N ANGL. DEV. = -15.1 DEGREES REMARK 500 ILE A 198 C - N - CA ANGL. DEV. = 18.7 DEGREES REMARK 500 ILE A 198 CG1 - CB - CG2 ANGL. DEV. = -14.2 DEGREES REMARK 500 ILE A 198 CA - CB - CG1 ANGL. DEV. = -29.0 DEGREES REMARK 500 ILE A 198 CA - CB - CG2 ANGL. DEV. = 54.8 DEGREES REMARK 500 VAL A 199 CG1 - CB - CG2 ANGL. DEV. = 12.5 DEGREES REMARK 500 VAL A 199 CA - CB - CG2 ANGL. DEV. = 18.3 DEGREES REMARK 500 GLU A 328 CA - C - N ANGL. DEV. = 24.5 DEGREES REMARK 500 GLU A 328 O - C - N ANGL. DEV. = -26.4 DEGREES REMARK 500 GLU A 329 C - N - CA ANGL. DEV. = 39.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 71 -26.27 56.27 REMARK 500 ARG A 73 6.78 -62.50 REMARK 500 LEU A 77 -75.02 -65.63 REMARK 500 ASN A 91 -71.79 -38.79 REMARK 500 GLU A 162 58.02 -104.58 REMARK 500 ASP A 168 -158.45 -67.60 REMARK 500 GLU A 169 97.41 -25.49 REMARK 500 PRO A 186 151.33 -49.33 REMARK 500 SER A 187 36.07 37.40 REMARK 500 ASN A 195 1.85 -68.28 REMARK 500 PRO A 197 -167.79 -56.33 REMARK 500 ILE A 198 -36.26 -7.56 REMARK 500 GLU A 220 115.19 -177.37 REMARK 500 ASP A 224 97.48 -68.14 REMARK 500 ASP A 267 -53.49 -128.26 REMARK 500 CYS A 272 87.30 -61.47 REMARK 500 GLU A 273 154.71 -26.03 REMARK 500 SER A 275 59.80 -102.10 REMARK 500 ASN A 282 98.48 -68.95 REMARK 500 ILE A 303 150.32 -39.40 REMARK 500 PHE A 313 4.92 -66.17 REMARK 500 ASP A 317 64.57 -157.86 REMARK 500 PRO A 318 168.89 -46.19 REMARK 500 LYS A 320 138.43 -24.06 REMARK 500 GLN A 322 121.20 -14.94 REMARK 500 GLU A 324 85.46 -60.02 REMARK 500 ASP A 325 -87.64 -23.25 REMARK 500 GLN A 326 -91.16 29.65 REMARK 500 ASP A 327 179.39 -36.97 REMARK 500 GLU A 329 -11.99 3.04 REMARK 500 GLU A 331 -85.12 -135.19 REMARK 500 GLU A 332 -35.77 -38.13 REMARK 500 ASP A 333 -71.17 -73.73 REMARK 500 PHE A 367 -20.70 -38.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 197 ILE A 198 -137.88 REMARK 500 GLU A 328 GLU A 329 -119.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 197 -15.50 REMARK 500 GLU A 328 -12.24 REMARK 500 REMARK 500 REMARK: NULL DBREF 2AYU A 1 417 UNP P25293 NAP1_YEAST 1 417 SEQRES 1 A 417 MET SER ASP PRO ILE ARG THR LYS PRO LYS SER SER MET SEQRES 2 A 417 GLN ILE ASP ASN ALA PRO THR PRO HIS ASN THR PRO ALA SEQRES 3 A 417 SER VAL LEU ASN PRO SER TYR LEU LYS ASN GLY ASN PRO SEQRES 4 A 417 VAL ARG ALA GLN ALA GLN GLU GLN ASP ASP LYS ILE GLY SEQRES 5 A 417 THR ILE ASN GLU GLU ASP ILE LEU ALA ASN GLN PRO LEU SEQRES 6 A 417 LEU LEU GLN SER ILE GLN ASP ARG LEU GLY SER LEU VAL SEQRES 7 A 417 GLY GLN ASP SER GLY TYR VAL GLY GLY LEU PRO LYS ASN SEQRES 8 A 417 VAL LYS GLU LYS LEU LEU SER LEU LYS THR LEU GLN SER SEQRES 9 A 417 GLU LEU PHE GLU VAL GLU LYS GLU PHE GLN VAL GLU MET SEQRES 10 A 417 PHE GLU LEU GLU ASN LYS PHE LEU GLN LYS TYR LYS PRO SEQRES 11 A 417 ILE TRP GLU GLN ARG SER ARG ILE ILE SER GLY GLN GLU SEQRES 12 A 417 GLN PRO LYS PRO GLU GLN ILE ALA LYS GLY GLN GLU ILE SEQRES 13 A 417 VAL GLU SER LEU ASN GLU THR GLU LEU LEU VAL ASP GLU SEQRES 14 A 417 GLU GLU LYS ALA GLN ASN ASP SER GLU GLU GLU GLN VAL SEQRES 15 A 417 LYS GLY ILE PRO SER PHE TRP LEU THR ALA LEU GLU ASN SEQRES 16 A 417 LEU PRO ILE VAL CYS ASP THR ILE THR ASP ARG ASP ALA SEQRES 17 A 417 GLU VAL LEU GLU TYR LEU GLN ASP ILE GLY LEU GLU TYR SEQRES 18 A 417 LEU THR ASP GLY ARG PRO GLY PHE LYS LEU LEU PHE ARG SEQRES 19 A 417 PHE ASP SER SER ALA ASN PRO PHE PHE THR ASN ASP ILE SEQRES 20 A 417 LEU CYS LYS THR TYR PHE TYR GLN LYS GLU LEU GLY TYR SEQRES 21 A 417 SER GLY ASP PHE ILE TYR ASP HIS ALA GLU GLY CYS GLU SEQRES 22 A 417 ILE SER TRP LYS ASP ASN ALA HIS ASN VAL THR VAL ASP SEQRES 23 A 417 LEU GLU MET ARG LYS GLN ARG ASN LYS THR THR LYS GLN SEQRES 24 A 417 VAL ARG THR ILE GLU LYS ILE THR PRO ILE GLU SER PHE SEQRES 25 A 417 PHE ASN PHE PHE ASP PRO PRO LYS ILE GLN ASN GLU ASP SEQRES 26 A 417 GLN ASP GLU GLU LEU GLU GLU ASP LEU GLU GLU ARG LEU SEQRES 27 A 417 ALA LEU ASP TYR SER ILE GLY GLU GLN LEU LYS ASP LYS SEQRES 28 A 417 LEU ILE PRO ARG ALA VAL ASP TRP PHE THR GLY ALA ALA SEQRES 29 A 417 LEU GLU PHE GLU PHE GLU GLU ASP GLU GLU GLU ALA ASP SEQRES 30 A 417 GLU ASP GLU ASP GLU GLU GLU ASP ASP ASP HIS GLY LEU SEQRES 31 A 417 GLU ASP ASP ASP GLY GLU SER ALA GLU GLU GLN ASP ASP SEQRES 32 A 417 PHE ALA GLY ARG PRO GLU GLN ALA PRO GLU CYS LYS GLN SEQRES 33 A 417 SER HELIX 1 1 SER A 76 LEU A 88 1 13 HELIX 2 2 PRO A 89 GLY A 141 1 53 HELIX 3 3 LYS A 146 LEU A 160 1 15 HELIX 4 4 GLU A 162 LEU A 166 5 5 HELIX 5 5 SER A 187 ASN A 195 1 9 HELIX 6 6 ILE A 198 THR A 202 5 5 HELIX 7 7 THR A 204 GLU A 209 1 6 HELIX 8 8 VAL A 210 GLU A 212 5 3 HELIX 9 9 SER A 311 ASP A 317 5 7 HELIX 10 10 GLU A 331 LYS A 351 1 21 HELIX 11 11 ARG A 355 GLY A 362 1 8 HELIX 12 12 GLY A 362 GLU A 370 1 9 SHEET 1 A 4 LEU A 214 GLY A 218 0 SHEET 2 A 4 GLY A 228 PHE A 235 -1 O LEU A 232 N GLY A 218 SHEET 3 A 4 ILE A 247 GLN A 255 -1 O LEU A 248 N PHE A 233 SHEET 4 A 4 ILE A 265 GLY A 271 -1 O GLU A 270 N THR A 251 SHEET 1 B 2 VAL A 285 MET A 289 0 SHEET 2 B 2 GLU A 304 PRO A 308 -1 O THR A 307 N ASP A 286 SSBOND 1 CYS A 249 CYS A 272 1555 1555 2.04 CRYST1 86.700 86.700 176.100 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011534 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005679 0.00000