HEADER TRANSFERASE 09-SEP-05 2AYX TITLE SOLUTION STRUCTURE OF THE E.COLI RCSC C-TERMINUS (RESIDUES 700-949) TITLE 2 CONTAINING LINKER REGION AND PHOSPHORECEIVER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR KINASE PROTEIN RCSC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL PART; COMPND 5 SYNONYM: CAPSULAR SYNTHESIS REGULATOR COMPONENT C; COMPND 6 EC: 2.7.3.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: RCSC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS TWO INDEPENDENT STRUCTURAL DOMAINS, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.V.ROGOV,N.Y.ROGOVA,F.BERNHARD,A.KOGLIN,F.LOHR,V.DOTSCH REVDAT 5 14-JUN-23 2AYX 1 REMARK REVDAT 4 26-FEB-20 2AYX 1 REMARK SEQADV REVDAT 3 24-FEB-09 2AYX 1 VERSN REVDAT 2 07-NOV-06 2AYX 1 JRNL AUTHOR REVDAT 1 26-SEP-06 2AYX 0 JRNL AUTH V.V.ROGOV,N.Y.ROGOVA,F.BERNHARD,A.KOGLIN,F.LOHR,V.DOTSCH JRNL TITL A NEW STRUCTURAL DOMAIN IN THE ESCHERICHIA COLI RCSC HYBRID JRNL TITL 2 SENSOR KINASE CONNECTS HISTIDINE KINASE AND PHOSPHORECEIVER JRNL TITL 3 DOMAINS JRNL REF J.MOL.BIOL. V. 364 68 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 17005198 JRNL DOI 10.1016/J.JMB.2006.07.052 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CNS 1.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AYX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034468. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM C-RCSC U-15N; 33MM TRIS-HCL; REMARK 210 125 MM NACL; 1MM TCEP; 95% H2O, REMARK 210 5% D2O; 1MM C-RCSC U-15N, 13C; REMARK 210 33MM TRIS-HCL; 125MM NACL; 1MM REMARK 210 TCEP; 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, AURELIA 2.7.5, REMARK 210 SPARKY 3.111, DYANA 1.5 REMARK 210 METHOD USED : ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE 3D_13C-SEPARATED_NOESY WAS RECORDED IN THREE REMARK 210 MODIFICATIONS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG13 ILE A 772 HD2 PRO A 773 1.23 REMARK 500 OD1 ASP A 875 HZ2 LYS A 925 1.56 REMARK 500 OE1 GLU A 702 HH21 ARG A 837 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 9 TYR A 799 CZ TYR A 799 CE2 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 702 -87.01 -128.30 REMARK 500 1 SER A 729 -99.68 -107.72 REMARK 500 1 GLU A 751 174.74 66.51 REMARK 500 1 TRP A 757 85.09 61.90 REMARK 500 1 ARG A 768 -58.13 -147.37 REMARK 500 1 PRO A 773 -108.33 -65.45 REMARK 500 1 LEU A 774 -154.75 174.36 REMARK 500 1 ALA A 787 69.99 62.91 REMARK 500 1 HIS A 789 -3.96 177.08 REMARK 500 1 ASP A 807 78.57 61.74 REMARK 500 1 ALA A 809 -120.07 51.47 REMARK 500 1 ASN A 822 -42.38 -166.61 REMARK 500 1 ASN A 855 97.53 -160.80 REMARK 500 1 ASP A 856 156.28 170.06 REMARK 500 1 ASN A 905 104.08 69.07 REMARK 500 1 MET A 919 -113.18 -113.77 REMARK 500 1 ASP A 920 -58.48 164.52 REMARK 500 1 ASP A 948 -168.40 59.54 REMARK 500 2 SER A 699 -73.33 -85.87 REMARK 500 2 LEU A 704 -141.37 -117.06 REMARK 500 2 SER A 729 -94.22 -100.25 REMARK 500 2 GLU A 751 -150.54 57.10 REMARK 500 2 LEU A 774 -156.29 -98.89 REMARK 500 2 GLU A 775 72.43 -61.42 REMARK 500 2 PRO A 778 70.82 -68.04 REMARK 500 2 HIS A 783 146.34 -172.98 REMARK 500 2 PRO A 788 41.24 -89.08 REMARK 500 2 HIS A 789 -28.17 73.78 REMARK 500 2 LEU A 800 79.60 50.34 REMARK 500 2 GLU A 804 -167.28 69.21 REMARK 500 2 PRO A 808 48.59 -72.71 REMARK 500 2 THR A 815 11.45 -157.59 REMARK 500 2 ASP A 816 -101.58 59.95 REMARK 500 2 VAL A 819 25.23 -77.62 REMARK 500 2 SER A 820 73.23 52.75 REMARK 500 2 ASP A 824 30.22 -144.90 REMARK 500 2 ASP A 870 -62.95 -99.60 REMARK 500 2 ASN A 880 -62.77 75.29 REMARK 500 2 MET A 881 -69.07 -172.70 REMARK 500 2 ASP A 882 -117.94 -81.09 REMARK 500 2 ALA A 908 30.76 -161.63 REMARK 500 2 MET A 919 -111.46 -119.40 REMARK 500 2 ASP A 920 -53.95 167.00 REMARK 500 2 PRO A 926 98.50 -60.60 REMARK 500 2 ARG A 947 -61.51 -95.83 REMARK 500 3 SER A 729 -100.24 -93.32 REMARK 500 3 GLN A 739 -161.39 -111.93 REMARK 500 3 GLU A 751 -170.88 61.88 REMARK 500 3 TRP A 757 95.89 69.27 REMARK 500 3 GLU A 775 72.99 -63.96 REMARK 500 REMARK 500 THIS ENTRY HAS 534 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 TYR A 799 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6810 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT VALUES FOR THE C-TERMINAL PART OF RCSC (RESIDUES 700- REMARK 900 949). REMARK 900 RELATED ID: 2AYY RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF RCSC LINKER REGION (RESIDUES 700-816) BASED REMARK 900 ON SEPARATE SET OF NMR CONSTRAINTS, 25 MODELS REMARK 900 RELATED ID: 2AYZ RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF RCSC PHOSPHORECEIVER DOMAIN (RESIDUES 817-949) REMARK 900 BASED ON SEPARATE SET OF NMR CONSTRAINTS, 25 MODELS DBREF 2AYX A 700 949 UNP P14376 RCSC_ECOLI 700 949 SEQADV 2AYX MET A 696 UNP P14376 CLONING ARTIFACT SEQADV 2AYX GLY A 697 UNP P14376 CLONING ARTIFACT SEQADV 2AYX GLY A 698 UNP P14376 CLONING ARTIFACT SEQADV 2AYX SER A 699 UNP P14376 CLONING ARTIFACT SEQRES 1 A 254 MET GLY GLY SER GLY VAL GLU GLY LEU SER GLY LYS ARG SEQRES 2 A 254 CYS TRP LEU ALA VAL ARG ASN ALA SER LEU CYS GLN PHE SEQRES 3 A 254 LEU GLU THR SER LEU GLN ARG SER GLY ILE VAL VAL THR SEQRES 4 A 254 THR TYR GLU GLY GLN GLU PRO THR PRO GLU ASP VAL LEU SEQRES 5 A 254 ILE THR ASP GLU VAL VAL SER LYS LYS TRP GLN GLY ARG SEQRES 6 A 254 ALA VAL VAL THR PHE CYS ARG ARG HIS ILE GLY ILE PRO SEQRES 7 A 254 LEU GLU LYS ALA PRO GLY GLU TRP VAL HIS SER VAL ALA SEQRES 8 A 254 ALA PRO HIS GLU LEU PRO ALA LEU LEU ALA ARG ILE TYR SEQRES 9 A 254 LEU ILE GLU MET GLU SER ASP ASP PRO ALA ASN ALA LEU SEQRES 10 A 254 PRO SER THR ASP LYS ALA VAL SER ASP ASN ASP ASP MET SEQRES 11 A 254 MET ILE LEU VAL VAL ASP ASP HIS PRO ILE ASN ARG ARG SEQRES 12 A 254 LEU LEU ALA ASP GLN LEU GLY SER LEU GLY TYR GLN CYS SEQRES 13 A 254 LYS THR ALA ASN ASP GLY VAL ASP ALA LEU ASN VAL LEU SEQRES 14 A 254 SER LYS ASN HIS ILE ASP ILE VAL LEU SER ASP VAL ASN SEQRES 15 A 254 MET PRO ASN MET ASP GLY TYR ARG LEU THR GLN ARG ILE SEQRES 16 A 254 ARG GLN LEU GLY LEU THR LEU PRO VAL ILE GLY VAL THR SEQRES 17 A 254 ALA ASN ALA LEU ALA GLU GLU LYS GLN ARG CYS LEU GLU SEQRES 18 A 254 SER GLY MET ASP SER CYS LEU SER LYS PRO VAL THR LEU SEQRES 19 A 254 ASP VAL ILE LYS GLN THR LEU THR LEU TYR ALA GLU ARG SEQRES 20 A 254 VAL ARG LYS SER ARG ASP SER HELIX 1 1 ASN A 715 GLN A 727 1 13 HELIX 2 2 HIS A 789 LEU A 800 1 12 HELIX 3 3 HIS A 833 GLY A 848 1 16 HELIX 4 4 GLY A 857 ASN A 867 1 11 HELIX 5 5 GLY A 883 LEU A 895 1 13 HELIX 6 6 ALA A 908 SER A 917 1 10 HELIX 7 7 THR A 928 ASP A 948 1 21 SHEET 1 A 5 ILE A 731 THR A 735 0 SHEET 2 A 5 LYS A 707 ALA A 712 1 N LEU A 711 O THR A 734 SHEET 3 A 5 VAL A 746 ASP A 750 1 O ILE A 748 N TRP A 710 SHEET 4 A 5 ALA A 761 PHE A 765 1 O VAL A 763 N LEU A 747 SHEET 5 A 5 GLU A 780 HIS A 783 1 O TRP A 781 N THR A 764 SHEET 1 B 5 GLN A 850 ALA A 854 0 SHEET 2 B 5 MET A 826 ASP A 831 1 N ILE A 827 O GLN A 850 SHEET 3 B 5 ILE A 871 VAL A 876 1 O LEU A 873 N LEU A 828 SHEET 4 B 5 VAL A 899 THR A 903 1 O ILE A 900 N VAL A 872 SHEET 5 B 5 ASP A 920 SER A 924 1 O SER A 921 N GLY A 901 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1