HEADER HYDROLASE/HYDROLASE INHIBITOR 09-SEP-05 2AZ9 TITLE HIV-1 PROTEASE NL4-3 1X MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE RETROPEPSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HIV-1 PROTEASE; COMPND 5 EC: 3.4.23.16; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: R8; SOURCE 5 GENE: POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21.DE3, PLYS S; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 21A+; SOURCE 11 OTHER_DETAILS: PROTEASE NL4-3 KEYWDS HIV, PROTEASE, INHIBITOR, TL-3, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HEASLET,V.KUTILEK,G.M.MORRIS,Y.-C.LIN,J.H.ELDER,B.E.TORBETT, AUTHOR 2 C.D.STOUT REVDAT 6 23-AUG-23 2AZ9 1 REMARK REVDAT 5 20-OCT-21 2AZ9 1 REMARK SEQADV REVDAT 4 24-JAN-18 2AZ9 1 AUTHOR JRNL REMARK REVDAT 3 13-JUL-11 2AZ9 1 VERSN REVDAT 2 24-FEB-09 2AZ9 1 VERSN REVDAT 1 28-FEB-06 2AZ9 0 JRNL AUTH H.HEASLET,V.KUTILEK,G.M.MORRIS,Y.-C.LIN,J.H.ELDER, JRNL AUTH 2 B.E.TORBETT,C.D.STOUT JRNL TITL STRUCTURAL INSIGHTS INTO THE MECHANISMS OF DRUG RESISTANCE JRNL TITL 2 IN HIV-1 PROTEASE NL4-3 JRNL REF J.MOL.BIOL. V. 356 967 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16403521 JRNL DOI 10.1016/J.JMB.2005.11.094 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 3494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 167 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 758 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.750 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.85 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AZ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034480. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.20 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : MOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3494 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 81.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.01110 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1KZK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM CITRATE, REMARK 280 PHOSPHATE BUFFER, PH 6.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 281.16K, PH 6.20 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.31333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.62667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.97000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.28333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.65667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.31333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 54.62667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 68.28333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.97000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 13.65667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND MONOMER OF THE BIOLOGICAL DIMER IS GENERATED BY REMARK 300 THE TWO FOLD AXIS: X-Y,-Y,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 108.71217 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 81.94000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 133 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C2 3TL A 200 C2 3TL A 200 8676 2.06 REMARK 500 OD2 ASP A 25 O1 3TL A 200 8676 2.07 REMARK 500 ND2 ASN A 98 ND2 ASN A 98 8676 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 39 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 PHE A 53 CA - C - N ANGL. DEV. = 15.8 DEGREES REMARK 500 PHE A 53 CA - C - N ANGL. DEV. = -23.6 DEGREES REMARK 500 PHE A 53 O - C - N ANGL. DEV. = -17.1 DEGREES REMARK 500 PHE A 53 O - C - N ANGL. DEV. = 19.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 34 -176.46 -62.54 REMARK 500 PRO A 39 -127.42 -42.41 REMARK 500 PRO A 44 -108.09 -54.52 REMARK 500 LYS A 45 144.01 81.62 REMARK 500 CYS A 67 16.54 49.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE INHIBITOR IS A C2 SYMMETRIC HIV PROTEASE REMARK 600 REMARK 600 THE STRUCTURE WAS REFINED WITH HALF OF THE C2 SYMMETRIC REMARK 600 LIGAND 3TL IN THE ASYMMETRIC UNIT - AS A RESULT A CLOSE REMARK 600 CONTACT SHOWS UP IN BETWEEN THE CARBON ATOMS CLOSEST TO REMARK 600 THE C2 SYMMETRY AXIS. REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: BENZYL [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-DIBENZYL- REMARK 630 8,9-DIHYDROXY-1,16-DIMETHYL-4,13-BIS(1-METHYLETHYL)-2,5,12,15,18- REMARK 630 PENTAOXO-20-PHENYL-19-OXA-3,6,11,14,17-PENTAAZAICOS-1-YL]CARBAMATE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 3TL A 200 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ ALA VAL PHL PHL VAL ALA PHQ REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3TL A 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AZ8 RELATED DB: PDB REMARK 900 WILD-TYPE PROTEASE NL4-3 IN COMPLEX WITH SAME INHIBITOR, TL-3 REMARK 900 RELATED ID: 2AZB RELATED DB: PDB REMARK 900 3X PROTEASE NL4-3 IN COMPLEX WITH THE SAME INHIBITOR, TL-3 REMARK 900 RELATED ID: 2AZC RELATED DB: PDB REMARK 900 6X PROTEASE NL4-3 IN COMPLEX WITH THE SAME INHIBITOR, TL-3 DBREF 2AZ9 A 1 99 UNP P03367 POL_HV1BR 69 167 SEQADV 2AZ9 LYS A 7 UNP P03367 GLN 75 VARIANT SEQADV 2AZ9 ASN A 37 UNP P03367 SER 105 VARIANT SEQADV 2AZ9 ALA A 82 UNP P03367 VAL 150 ENGINEERED MUTATION SEQRES 1 A 99 PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE SEQRES 2 A 99 LYS ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 A 99 GLY ALA ASP ASP THR VAL LEU GLU GLU MET ASN LEU PRO SEQRES 4 A 99 GLY ARG TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 A 99 PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE LEU ILE GLU SEQRES 6 A 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 A 99 PRO THR PRO ALA ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 A 99 GLN ILE GLY CYS THR LEU ASN PHE HET 3TL A 200 33 HETNAM 3TL BENZYL [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-DIBENZYL-8,9- HETNAM 2 3TL DIHYDROXY-1,16-DIMETHYL-4,13-BIS(1-METHYLETHYL)-2,5, HETNAM 3 3TL 12,15,18-PENTAOXO-20-PHENYL-19-OXA-3,6,11,14,17- HETNAM 4 3TL PENTAAZAICOS-1-YL]CARBAMATE HETSYN 3TL TL-3, C2 SYMMETRIC INHIBITOR FORMUL 2 3TL C50 H64 N6 O10 FORMUL 3 HOH *36(H2 O) HELIX 1 1 GLY A 86 THR A 91 1 6 SHEET 1 A 4 GLU A 65 ILE A 66 0 SHEET 2 A 4 LEU A 10 ILE A 15 -1 N LYS A 14 O GLU A 65 SHEET 3 A 4 GLN A 18 LEU A 24 -1 O LYS A 20 N ILE A 13 SHEET 4 A 4 ILE A 84 ILE A 85 1 O ILE A 85 N LEU A 23 SHEET 1 B 4 VAL A 32 LEU A 33 0 SHEET 2 B 4 ILE A 72 VAL A 77 1 O LEU A 76 N LEU A 33 SHEET 3 B 4 PHE A 53 LEU A 63 -1 N TYR A 59 O VAL A 75 SHEET 4 B 4 LYS A 43 GLY A 48 -1 N LYS A 45 O VAL A 56 SITE 1 AC1 12 ARG A 8 ASP A 25 GLY A 27 ALA A 28 SITE 2 AC1 12 ASP A 29 MET A 46 ILE A 47 GLY A 48 SITE 3 AC1 12 GLY A 49 ILE A 50 PRO A 81 HOH A 135 CRYST1 62.765 62.765 81.940 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015932 0.009199 0.000000 0.00000 SCALE2 0.000000 0.018397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012204 0.00000 TER 785 PHE A 99 HETATM 786 C31 3TL A 200 15.574 58.582 33.233 1.00 27.20 C HETATM 787 O8 3TL A 200 16.705 58.102 33.431 1.00 27.53 O HETATM 788 O9 3TL A 200 15.355 58.866 31.946 1.00 27.30 O HETATM 789 CA 3TL A 200 15.617 60.134 31.439 1.00 27.28 C HETATM 790 C 3TL A 200 16.883 60.828 31.373 1.00 26.82 C HETATM 791 C13 3TL A 200 17.818 60.172 30.406 1.00 28.55 C HETATM 792 C14 3TL A 200 19.066 60.760 30.256 1.00 26.33 C HETATM 793 C15 3TL A 200 19.372 61.973 31.052 1.00 25.05 C HETATM 794 C16 3TL A 200 18.438 62.635 32.025 1.00 26.62 C HETATM 795 C17 3TL A 200 17.130 62.034 32.194 1.00 27.87 C HETATM 796 N4 3TL A 200 14.473 58.920 33.890 1.00 25.71 N HETATM 797 C18 3TL A 200 14.260 58.809 35.189 1.00 25.81 C HETATM 798 C19 3TL A 200 13.320 57.645 35.545 1.00 25.93 C HETATM 799 O4 3TL A 200 12.091 57.555 35.217 1.00 26.94 O HETATM 800 C20 3TL A 200 13.748 60.241 35.482 1.00 24.02 C HETATM 801 N2 3TL A 200 14.030 56.773 36.246 1.00 26.73 N HETATM 802 C10 3TL A 200 13.579 55.499 36.819 1.00 25.62 C HETATM 803 C11 3TL A 200 13.989 55.517 38.286 1.00 24.05 C HETATM 804 O2 3TL A 200 15.055 55.218 38.842 1.00 17.96 O HETATM 805 C12 3TL A 200 14.073 54.316 35.930 1.00 25.91 C HETATM 806 CG2 3TL A 200 13.604 54.376 34.452 1.00 24.66 C HETATM 807 CG1 3TL A 200 13.625 52.986 36.470 1.00 25.87 C HETATM 808 C2 3TL A 200 11.659 55.381 40.892 1.00 30.31 C HETATM 809 O1 3TL A 200 10.479 55.827 40.400 1.00 28.81 O HETATM 810 C1 3TL A 200 12.976 56.084 40.551 1.00 30.34 C HETATM 811 N1 3TL A 200 12.991 55.929 39.048 1.00 26.72 N HETATM 812 C3 3TL A 200 13.436 57.396 41.089 1.00 31.55 C HETATM 813 C4 3TL A 200 13.700 58.639 40.391 1.00 34.11 C HETATM 814 C5 3TL A 200 12.669 59.567 39.810 1.00 35.20 C HETATM 815 C9 3TL A 200 15.081 58.914 40.317 1.00 34.11 C HETATM 816 C6 3TL A 200 13.064 60.835 39.124 1.00 34.15 C HETATM 817 C8 3TL A 200 15.504 60.120 39.665 1.00 35.04 C HETATM 818 C7 3TL A 200 14.504 61.081 39.070 1.00 35.34 C HETATM 819 O HOH A 100 13.818 58.582 27.025 1.00 37.35 O HETATM 820 O HOH A 101 10.320 43.274 39.734 1.00 30.83 O HETATM 821 O HOH A 102 16.324 35.628 26.089 1.00 38.02 O HETATM 822 O HOH A 103 10.270 52.245 28.004 1.00 22.77 O HETATM 823 O HOH A 104 7.185 59.117 36.481 1.00 13.26 O HETATM 824 O HOH A 105 12.079 41.022 38.553 1.00 27.29 O HETATM 825 O HOH A 106 -1.369 45.529 48.873 1.00 14.15 O HETATM 826 O HOH A 107 9.817 59.632 36.450 1.00 15.68 O HETATM 827 O HOH A 108 5.695 46.090 52.130 1.00 45.45 O HETATM 828 O HOH A 109 2.323 38.493 40.434 1.00 36.25 O HETATM 829 O HOH A 110 8.977 40.753 49.468 1.00 32.75 O HETATM 830 O HOH A 111 5.549 58.789 29.114 1.00 20.66 O HETATM 831 O HOH A 112 15.410 37.662 36.930 1.00 42.51 O HETATM 832 O HOH A 113 5.950 43.622 48.897 1.00 29.07 O HETATM 833 O HOH A 114 13.116 38.244 19.991 1.00 34.60 O HETATM 834 O HOH A 115 2.477 49.466 16.908 1.00 32.11 O HETATM 835 O HOH A 116 7.506 52.005 20.714 1.00 41.19 O HETATM 836 O HOH A 117 -10.761 45.948 40.984 1.00 46.03 O HETATM 837 O HOH A 118 8.127 59.125 28.634 1.00 21.41 O HETATM 838 O HOH A 119 13.212 47.505 18.052 1.00 31.86 O HETATM 839 O HOH A 120 6.690 53.449 24.288 1.00 22.41 O HETATM 840 O HOH A 121 7.989 31.649 30.506 1.00 26.65 O HETATM 841 O HOH A 122 18.061 41.423 20.290 1.00 41.25 O HETATM 842 O HOH A 123 12.986 34.910 34.156 1.00 40.34 O HETATM 843 O HOH A 124 19.887 41.919 33.427 1.00 35.01 O HETATM 844 O HOH A 125 0.091 46.382 46.231 1.00 38.42 O HETATM 845 O HOH A 126 11.308 37.722 21.986 1.00 39.44 O HETATM 846 O HOH A 127 2.759 39.338 24.667 1.00 24.72 O HETATM 847 O HOH A 128 2.865 43.763 56.306 1.00 40.02 O HETATM 848 O HOH A 129 5.976 40.072 23.409 1.00 32.13 O HETATM 849 O HOH A 130 -6.302 41.322 36.198 1.00 32.13 O HETATM 850 O HOH A 131 -1.429 39.910 37.100 1.00 32.13 O HETATM 851 O HOH A 132 0.071 37.829 39.031 1.00 32.13 O HETATM 852 O HOH A 133 -0.009 50.620 20.481 0.50 32.13 O HETATM 853 O HOH A 134 14.565 44.703 44.159 1.00 32.13 O HETATM 854 O HOH A 135 16.344 54.833 41.164 0.50 7.58 O CONECT 786 787 788 796 CONECT 787 786 CONECT 788 786 789 CONECT 789 788 790 CONECT 790 789 791 795 CONECT 791 790 792 CONECT 792 791 793 CONECT 793 792 794 CONECT 794 793 795 CONECT 795 790 794 CONECT 796 786 797 CONECT 797 796 798 800 CONECT 798 797 799 801 CONECT 799 798 CONECT 800 797 CONECT 801 798 802 CONECT 802 801 803 805 CONECT 803 802 804 811 CONECT 804 803 CONECT 805 802 806 807 CONECT 806 805 CONECT 807 805 CONECT 808 809 810 CONECT 809 808 CONECT 810 808 811 812 CONECT 811 803 810 CONECT 812 810 813 CONECT 813 812 814 815 CONECT 814 813 816 CONECT 815 813 817 CONECT 816 814 818 CONECT 817 815 818 CONECT 818 816 817 MASTER 364 0 1 1 8 0 3 6 827 1 33 8 END