HEADER OXIDOREDUCTASE 12-SEP-05 2AZQ TITLE CRYSTAL STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM PSEUDOMONAS ARVILLA TITLE 2 C-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATECHOL 1,2-DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.11.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 STRAIN: C-1; SOURCE 5 OTHER_DETAILS: SYNONYM PSEUDOMONAS ARVILLA KEYWDS CTD; CATECHOL; DIOXYGENASE; LIPID; ISOZYME; INTRADIOL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.A.EARHART,M.W.VETTING,R.GOSU,I.MICHAUD-SORET,L.QUE,D.H.OHLENDORF REVDAT 6 23-AUG-23 2AZQ 1 REMARK SEQADV LINK REVDAT 5 11-OCT-17 2AZQ 1 REMARK REVDAT 4 13-JUL-11 2AZQ 1 VERSN REVDAT 3 24-FEB-09 2AZQ 1 VERSN REVDAT 2 13-DEC-05 2AZQ 1 JRNL REVDAT 1 04-OCT-05 2AZQ 0 JRNL AUTH C.A.EARHART,M.W.VETTING,R.GOSU,I.MICHAUD-SORET,L.QUE, JRNL AUTH 2 D.H.OHLENDORF JRNL TITL STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM PSEUDOMONAS JRNL TITL 2 ARVILLA JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 338 198 2005 JRNL REFN ISSN 0006-291X JRNL PMID 16171781 JRNL DOI 10.1016/J.BBRC.2005.08.221 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 10566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 555 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2411 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.87500 REMARK 3 B22 (A**2) : 1.36700 REMARK 3 B33 (A**2) : 0.50800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.453 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.458 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.245 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.605 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 16.54 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : LIP_EVEN_PRODRG2.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : COPPER K-ALPHA REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : X-GEN REMARK 200 DATA SCALING SOFTWARE : X-GEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25259 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 21.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.4 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1DLT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS/MALATE, PEG 8000, MAGNESIUM REMARK 280 ACETATE, PH 7.6, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.54500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.54500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.36500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.76000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.36500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.76000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.54500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.36500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.76000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.54500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.36500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.76000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS DIMER. IT IS GENERATED BY 2FOLD REMARK 300 ROTATION ABOUT X AXIS: X,-Y,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 THR A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 273 NH2 ARG A 273 3654 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 43 CA - CB - CG ANGL. DEV. = 19.3 DEGREES REMARK 500 PRO A 128 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 LEU A 233 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 104 142.42 -38.49 REMARK 500 PRO A 128 51.90 -110.02 REMARK 500 TYR A 164 -50.03 77.33 REMARK 500 PHE A 172 37.13 36.90 REMARK 500 SER A 190 -141.77 -150.72 REMARK 500 ASP A 247 28.27 -156.44 REMARK 500 ASP A 266 94.98 -169.68 REMARK 500 ALA A 268 72.73 -113.57 REMARK 500 ALA A 269 30.25 -82.95 REMARK 500 ASP A 272 -30.12 102.05 REMARK 500 ARG A 273 22.58 -157.63 REMARK 500 VAL A 275 -144.86 -128.30 REMARK 500 GLN A 276 -51.70 -170.39 REMARK 500 GLU A 278 -18.68 47.87 REMARK 500 ARG A 279 146.51 157.87 REMARK 500 SER A 294 159.19 166.58 REMARK 500 ALA A 299 1.13 -171.70 REMARK 500 ARG A 300 150.30 55.90 REMARK 500 GLU A 309 40.14 35.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 164 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PCF A 954 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 400 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 162 OH REMARK 620 2 TYR A 196 OH 88.7 REMARK 620 3 HIS A 220 NE2 97.5 82.3 REMARK 620 4 HIS A 222 NE2 91.9 168.3 86.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCF A 954 DBREF 2AZQ A 0 310 UNP Q51433 Q51433_PSEPU 1 311 SEQADV 2AZQ PHE A 228 UNP Q51433 PRO 229 CONFLICT SEQADV 2AZQ ALA A 299 UNP Q51433 GLU 300 CONFLICT SEQRES 1 A 311 MET THR VAL LYS ILE SER HIS THR ALA ASP ILE GLN ALA SEQRES 2 A 311 PHE PHE ASN GLN VAL ALA GLY LEU ASP HIS ALA GLU GLY SEQRES 3 A 311 LYS PRO ARG PHE LYS GLN ILE ILE LEU ARG VAL LEU GLN SEQRES 4 A 311 ASP THR ALA ARG LEU ILE GLU ASP LEU GLU ILE THR GLU SEQRES 5 A 311 ASP GLU PHE TRP HIS ALA VAL ASP TYR LEU ASN ARG LEU SEQRES 6 A 311 GLY GLY ARG ASN GLU ALA GLY LEU LEU ALA ALA GLY LEU SEQRES 7 A 311 GLY ILE GLU HIS PHE LEU ASP LEU LEU GLN ASP ALA LYS SEQRES 8 A 311 ASP ALA GLU ALA GLY LEU GLY GLY GLY THR PRO ARG THR SEQRES 9 A 311 ILE GLU GLY PRO LEU TYR VAL ALA GLY ALA PRO LEU ALA SEQRES 10 A 311 GLN GLY GLU VAL ARG MET ASP ASP GLY THR ASP PRO GLY SEQRES 11 A 311 VAL VAL MET PHE LEU GLN GLY GLN VAL PHE ASP ALA ASN SEQRES 12 A 311 GLY LYS PRO LEU ALA GLY ALA THR VAL ASP LEU TRP HIS SEQRES 13 A 311 ALA ASN THR GLN GLY THR TYR SER TYR PHE ASP SER THR SEQRES 14 A 311 GLN SER GLU PHE ASN LEU ARG ARG ARG ILE ILE THR ASP SEQRES 15 A 311 ALA GLU GLY ARG TYR ARG ALA ARG SER ILE VAL PRO SER SEQRES 16 A 311 GLY TYR GLY CYS ASP PRO GLN GLY PRO THR GLN GLU CYS SEQRES 17 A 311 LEU ASP LEU LEU GLY ARG HIS GLY GLN ARG PRO ALA HIS SEQRES 18 A 311 VAL HIS PHE PHE ILE SER ALA PHE GLY HIS ARG HIS LEU SEQRES 19 A 311 THR THR GLN ILE ASN PHE ALA GLY ASP LYS TYR LEU TRP SEQRES 20 A 311 ASP ASP PHE ALA TYR ALA THR ARG ASP GLY LEU ILE GLY SEQRES 21 A 311 GLU LEU ARG PHE VAL GLU ASP ALA ALA ALA ALA ARG ASP SEQRES 22 A 311 ARG GLY VAL GLN GLY GLU ARG PHE ALA GLU LEU SER PHE SEQRES 23 A 311 ASP PHE ARG LEU GLN GLY ALA GLN SER PRO ASP ALA GLU SEQRES 24 A 311 ALA ARG SER HIS ARG PRO ARG ALA LEU GLN GLU GLY HET FE A 400 1 HET PCF A 954 44 HETNAM FE FE (III) ION HETNAM PCF 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE FORMUL 2 FE FE 3+ FORMUL 3 PCF C40 H80 N O8 P HELIX 1 1 THR A 7 GLY A 19 1 13 HELIX 2 2 LYS A 26 LEU A 47 1 22 HELIX 3 3 THR A 50 ASN A 68 1 19 HELIX 4 4 GLU A 69 LEU A 77 1 9 HELIX 5 5 GLY A 78 ALA A 94 1 17 HELIX 6 6 GLY A 202 LEU A 211 1 10 HELIX 7 7 SER A 294 GLU A 298 5 5 SHEET 1 A 6 LEU A 115 GLN A 117 0 SHEET 2 A 6 ARG A 175 ILE A 179 1 O ILE A 179 N ALA A 116 SHEET 3 A 6 THR A 150 TRP A 154 -1 N VAL A 151 O ILE A 178 SHEET 4 A 6 HIS A 220 SER A 226 -1 O PHE A 224 N ASP A 152 SHEET 5 A 6 LEU A 233 PHE A 239 -1 O THR A 235 N PHE A 223 SHEET 6 A 6 ILE A 258 GLY A 259 1 O GLY A 259 N ASN A 238 SHEET 1 B 5 GLU A 119 ARG A 121 0 SHEET 2 B 5 ARG A 185 ILE A 191 1 O ARG A 189 N VAL A 120 SHEET 3 B 5 VAL A 131 PHE A 139 -1 N LEU A 134 O ALA A 188 SHEET 4 B 5 PHE A 280 SER A 284 1 O ALA A 281 N VAL A 131 SHEET 5 B 5 ARG A 262 VAL A 264 -1 N ARG A 262 O GLU A 282 SHEET 1 C 4 GLU A 119 ARG A 121 0 SHEET 2 C 4 ARG A 185 ILE A 191 1 O ARG A 189 N VAL A 120 SHEET 3 C 4 VAL A 131 PHE A 139 -1 N LEU A 134 O ALA A 188 SHEET 4 C 4 PHE A 287 ARG A 288 1 O PHE A 287 N PHE A 139 SHEET 1 D 2 TYR A 196 GLY A 197 0 SHEET 2 D 2 GLN A 216 ARG A 217 -1 O ARG A 217 N TYR A 196 LINK OH TYR A 162 FE FE A 400 1555 1555 1.62 LINK OH TYR A 196 FE FE A 400 1555 1555 1.79 LINK NE2 HIS A 220 FE FE A 400 1555 1555 2.40 LINK NE2 HIS A 222 FE FE A 400 1555 1555 2.00 SITE 1 AC1 5 TYR A 162 TYR A 196 ARG A 217 HIS A 220 SITE 2 AC1 5 HIS A 222 SITE 1 AC2 6 LYS A 26 PHE A 29 GLU A 53 ALA A 57 SITE 2 AC2 6 TYR A 60 LEU A 210 CRYST1 62.730 71.520 187.090 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015941 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005345 0.00000