HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-SEP-05 2B0C TITLE THE CRYSTAL STRUCTURE OF THE PUTATIVE PHOSPHATASE FROM ESCHERICHIA TITLE 2 COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YIHX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PHOSPHATASE, ALPHA-D-GLUCOSE-1-PHOSPHATE, STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,T.SKARINA,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 25-DEC-24 2B0C 1 REMARK HETSYN LINK REVDAT 4 29-JUL-20 2B0C 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 13-JUL-11 2B0C 1 VERSN REVDAT 2 24-FEB-09 2B0C 1 VERSN REVDAT 1 22-NOV-05 2B0C 0 JRNL AUTH R.ZHANG,T.SKARINA,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL THE 2.0A CRYSTAL STRUCTURE OF THE PUTATIVE PHOSPHATASE FROM JRNL TITL 2 ESCHERICHIA COLI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 16597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 885 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1130 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -1.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.309 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1662 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2255 ; 1.273 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 198 ; 5.288 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;34.769 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 272 ;14.209 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 9.287 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 247 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1272 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 788 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1140 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 147 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1034 ; 0.766 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1600 ; 1.297 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 726 ; 2.220 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 655 ; 3.393 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2B0C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32006 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 56.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.57800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: FREIDEL PAIRS WERE USED. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M MES, 25% PEG 5KMME, 0.2M REMARK 280 (NH4)2SO4, 10MM MGCL2, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.51900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.12800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.12800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.75950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.12800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.12800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 95.27850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.12800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.12800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.75950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.12800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.12800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 95.27850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.51900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN MAY EXISTED AS DIMER. THE SECOND PART OF THE REMARK 300 DIMER IS GENERATED BY THE OPERATION: 1/2-X,1/2+Y,1/4-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 127.03800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 LYS A 4 REMARK 465 GLU A 5 REMARK 465 LEU A 205 REMARK 465 CYS A 206 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 13 O2 G1P A 496 2.01 REMARK 500 OD2 ASP A 173 O3 G1P A 496 2.15 REMARK 500 OD2 ASP A 32 O HOH A 652 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 13 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 13 CB - CG - OD2 ANGL. DEV. = 11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 14 -69.38 -96.56 REMARK 500 VAL A 17 -57.47 -131.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 497 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 32 OD2 REMARK 620 2 THR A 122 O 136.2 REMARK 620 3 GLU A 127 OE1 84.8 74.0 REMARK 620 4 GLU A 127 OE2 67.9 120.6 52.5 REMARK 620 5 HOH A 514 O 57.1 165.5 117.2 66.7 REMARK 620 6 HOH A 521 O 147.8 72.6 92.9 85.2 96.7 REMARK 620 7 HOH A 545 O 98.9 83.1 149.6 155.8 89.2 99.1 REMARK 620 8 HOH A 652 O 47.1 94.3 90.2 108.2 94.8 165.0 71.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5626 RELATED DB: TARGETDB DBREF 2B0C A 1 206 UNP P0A8Y3 YIHX_ECOLI 1 206 SEQRES 1 A 206 MET ALA ARG LYS GLU ALA LYS MET LEU TYR ILE PHE ASP SEQRES 2 A 206 LEU GLY ASN VAL ILE VAL ASP ILE ASP PHE ASN ARG VAL SEQRES 3 A 206 LEU GLY ALA TRP SER ASP LEU THR ARG ILE PRO LEU ALA SEQRES 4 A 206 SER LEU LYS LYS SER PHE HIS MET GLY GLU ALA PHE HIS SEQRES 5 A 206 GLN HIS GLU ARG GLY GLU ILE SER ASP GLU ALA PHE ALA SEQRES 6 A 206 GLU ALA LEU CYS HIS GLU MET ALA LEU PRO LEU SER TYR SEQRES 7 A 206 GLU GLN PHE SER HIS GLY TRP GLN ALA VAL PHE VAL ALA SEQRES 8 A 206 LEU ARG PRO GLU VAL ILE ALA ILE MET HIS LYS LEU ARG SEQRES 9 A 206 GLU GLN GLY HIS ARG VAL VAL VAL LEU SER ASN THR ASN SEQRES 10 A 206 ARG LEU HIS THR THR PHE TRP PRO GLU GLU TYR PRO GLU SEQRES 11 A 206 ILE ARG ASP ALA ALA ASP HIS ILE TYR LEU SER GLN ASP SEQRES 12 A 206 LEU GLY MET ARG LYS PRO GLU ALA ARG ILE TYR GLN HIS SEQRES 13 A 206 VAL LEU GLN ALA GLU GLY PHE SER PRO SER ASP THR VAL SEQRES 14 A 206 PHE PHE ASP ASP ASN ALA ASP ASN ILE GLU GLY ALA ASN SEQRES 15 A 206 GLN LEU GLY ILE THR SER ILE LEU VAL LYS ASP LYS THR SEQRES 16 A 206 THR ILE PRO ASP TYR PHE ALA LYS VAL LEU CYS HET G1P A 496 16 HET MG A 497 1 HETNAM G1P 1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE HETNAM MG MAGNESIUM ION HETSYN G1P ALPHA-D-GLUCOSE-1-PHOSPHATE; 1-O-PHOSPHONO-ALPHA-D- HETSYN 2 G1P GLUCOSE; 1-O-PHOSPHONO-D-GLUCOSE; 1-O-PHOSPHONO- HETSYN 3 G1P GLUCOSE FORMUL 2 G1P C6 H13 O9 P FORMUL 3 MG MG 2+ FORMUL 4 HOH *161(H2 O) HELIX 1 1 PHE A 23 ARG A 35 1 13 HELIX 2 2 PRO A 37 PHE A 45 1 9 HELIX 3 3 GLY A 48 ARG A 56 1 9 HELIX 4 4 SER A 60 ALA A 73 1 14 HELIX 5 5 SER A 77 ALA A 87 1 11 HELIX 6 6 ARG A 93 GLN A 106 1 14 HELIX 7 7 TRP A 124 GLU A 127 5 4 HELIX 8 8 TYR A 128 ALA A 135 1 8 HELIX 9 9 SER A 141 GLY A 145 1 5 HELIX 10 10 GLU A 150 GLY A 162 1 13 HELIX 11 11 SER A 164 SER A 166 5 3 HELIX 12 12 ASN A 174 GLN A 183 1 10 HELIX 13 13 THR A 195 LYS A 203 1 9 SHEET 1 A 5 HIS A 137 LEU A 140 0 SHEET 2 A 5 ARG A 109 SER A 114 1 N VAL A 112 O TYR A 139 SHEET 3 A 5 LEU A 9 PHE A 12 1 N TYR A 10 O ARG A 109 SHEET 4 A 5 THR A 168 ASP A 172 1 O VAL A 169 N LEU A 9 SHEET 5 A 5 THR A 187 LEU A 190 1 O ILE A 189 N PHE A 170 SHEET 1 B 2 VAL A 19 ASP A 22 0 SHEET 2 B 2 PHE A 89 LEU A 92 -1 O ALA A 91 N ASP A 20 LINK OD2 ASP A 32 MG MG A 497 1555 1555 2.97 LINK O THR A 122 MG MG A 497 7556 1555 2.68 LINK OE1 GLU A 127 MG MG A 497 7556 1555 2.54 LINK OE2 GLU A 127 MG MG A 497 7556 1555 2.38 LINK MG MG A 497 O HOH A 514 1555 1555 2.39 LINK MG MG A 497 O HOH A 521 1555 7556 2.51 LINK MG MG A 497 O HOH A 545 1555 1555 2.24 LINK MG MG A 497 O HOH A 652 1555 1555 2.28 CISPEP 1 LYS A 148 PRO A 149 0 8.59 CRYST1 62.256 62.256 127.038 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016063 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007872 0.00000 TER 1605 VAL A 204 HETATM 1606 C1 G1P A 496 19.146 4.568 51.911 1.00 42.96 C HETATM 1607 C2 G1P A 496 18.014 3.610 51.482 1.00 41.16 C HETATM 1608 C3 G1P A 496 17.319 4.233 50.283 1.00 45.09 C HETATM 1609 C4 G1P A 496 17.081 5.685 50.637 1.00 50.68 C HETATM 1610 C5 G1P A 496 18.403 6.408 50.411 1.00 51.34 C HETATM 1611 C6 G1P A 496 18.361 7.842 50.955 1.00 54.20 C HETATM 1612 O1 G1P A 496 20.176 3.634 52.148 1.00 38.17 O HETATM 1613 O2 G1P A 496 18.480 2.237 51.445 1.00 21.94 O HETATM 1614 O3 G1P A 496 16.044 3.654 50.138 1.00 51.66 O HETATM 1615 O4 G1P A 496 16.000 6.270 49.882 1.00 54.54 O HETATM 1616 O5 G1P A 496 19.486 5.608 50.945 1.00 48.75 O HETATM 1617 O6 G1P A 496 18.347 7.875 52.389 1.00 56.87 O HETATM 1618 P G1P A 496 21.604 4.019 52.643 1.00 35.92 P HETATM 1619 O1P G1P A 496 21.585 3.623 54.097 1.00 34.88 O HETATM 1620 O2P G1P A 496 22.464 3.137 51.774 1.00 32.46 O HETATM 1621 O3P G1P A 496 21.692 5.518 52.395 1.00 37.22 O HETATM 1622 MG MG A 497 12.455 28.271 62.446 1.00 34.67 MG HETATM 1623 O HOH A 498 17.739 13.723 62.402 1.00 28.87 O HETATM 1624 O HOH A 499 10.462 -4.193 58.936 1.00 33.84 O HETATM 1625 O HOH A 500 37.011 6.711 46.670 1.00 35.65 O HETATM 1626 O HOH A 501 11.255 -5.065 55.559 1.00 38.92 O HETATM 1627 O HOH A 502 12.358 -3.132 57.086 1.00 35.23 O HETATM 1628 O HOH A 503 25.537 15.660 38.812 1.00 37.91 O HETATM 1629 O HOH A 504 19.816 11.658 62.920 1.00 34.32 O HETATM 1630 O HOH A 505 32.500 1.903 58.422 1.00 38.63 O HETATM 1631 O HOH A 506 12.970 16.513 62.322 1.00 35.37 O HETATM 1632 O HOH A 507 13.811 -3.692 69.076 1.00 40.22 O HETATM 1633 O HOH A 508 8.710 24.657 55.739 1.00 35.20 O HETATM 1634 O HOH A 509 23.508 6.381 56.633 1.00 30.18 O HETATM 1635 O HOH A 510 13.645 11.190 51.633 1.00 38.31 O HETATM 1636 O HOH A 511 22.036 2.934 49.241 1.00 30.04 O HETATM 1637 O HOH A 512 28.780 4.427 42.282 1.00 39.50 O HETATM 1638 O HOH A 513 31.464 13.471 56.678 1.00 38.43 O HETATM 1639 O HOH A 514 11.724 30.262 61.342 1.00 40.27 O HETATM 1640 O HOH A 515 24.560 15.607 43.529 1.00 44.45 O HETATM 1641 O HOH A 516 12.768 6.000 66.298 1.00 36.36 O HETATM 1642 O HOH A 517 24.072 17.222 66.460 1.00 35.13 O HETATM 1643 O HOH A 518 9.579 3.312 61.686 1.00 41.37 O HETATM 1644 O HOH A 519 23.680 -2.514 39.999 1.00 56.20 O HETATM 1645 O HOH A 520 20.642 5.912 55.945 1.00 41.99 O HETATM 1646 O HOH A 521 29.216 12.474 62.263 1.00 47.80 O HETATM 1647 O HOH A 522 29.917 25.316 52.474 1.00 53.08 O HETATM 1648 O HOH A 523 27.393 -12.410 65.559 1.00 53.15 O HETATM 1649 O HOH A 524 10.991 -0.198 53.222 1.00 39.17 O HETATM 1650 O HOH A 525 34.507 -0.037 58.420 1.00 44.04 O HETATM 1651 O HOH A 526 27.783 26.118 51.926 1.00 51.33 O HETATM 1652 O HOH A 527 36.383 18.372 48.786 1.00 42.26 O HETATM 1653 O HOH A 528 19.029 25.831 59.156 1.00 47.38 O HETATM 1654 O HOH A 529 28.480 3.845 63.921 1.00 53.50 O HETATM 1655 O HOH A 530 36.387 -2.121 56.999 1.00 50.95 O HETATM 1656 O HOH A 531 28.873 28.056 58.923 1.00 43.04 O HETATM 1657 O HOH A 532 22.619 5.081 47.844 1.00 37.01 O HETATM 1658 O HOH A 533 34.328 17.000 55.844 1.00 51.73 O HETATM 1659 O HOH A 534 33.347 -12.005 60.898 1.00 59.00 O HETATM 1660 O HOH A 535 26.073 7.649 69.663 1.00 42.04 O HETATM 1661 O HOH A 536 27.870 -3.841 40.813 1.00 49.66 O HETATM 1662 O HOH A 537 27.320 19.937 65.530 1.00 35.76 O HETATM 1663 O HOH A 538 33.823 -7.309 61.803 1.00 60.54 O HETATM 1664 O HOH A 539 31.425 -0.834 63.279 1.00 46.62 O HETATM 1665 O HOH A 540 19.848 -4.316 34.871 1.00 76.59 O HETATM 1666 O HOH A 541 33.556 -2.299 41.923 1.00 44.15 O HETATM 1667 O HOH A 542 29.535 28.824 55.410 1.00 48.66 O HETATM 1668 O HOH A 543 10.609 29.042 43.729 1.00 61.80 O HETATM 1669 O HOH A 544 7.788 12.598 57.781 1.00 59.89 O HETATM 1670 O HOH A 545 14.556 28.751 61.851 1.00 48.21 O HETATM 1671 O HOH A 546 32.488 12.945 52.483 1.00 45.37 O HETATM 1672 O HOH A 547 14.970 0.239 43.662 1.00 50.90 O HETATM 1673 O HOH A 548 7.780 25.318 42.318 1.00 59.21 O HETATM 1674 O HOH A 549 26.708 28.154 46.703 1.00 71.55 O HETATM 1675 O HOH A 550 7.111 26.144 51.500 1.00 43.64 O HETATM 1676 O HOH A 551 15.711 -9.679 69.964 1.00 51.28 O HETATM 1677 O HOH A 552 28.360 -1.708 65.606 1.00 54.65 O HETATM 1678 O HOH A 553 12.112 -1.375 47.395 1.00 47.98 O HETATM 1679 O HOH A 554 14.273 12.451 63.147 1.00 42.71 O HETATM 1680 O HOH A 555 34.336 10.851 56.715 1.00 49.13 O HETATM 1681 O HOH A 556 18.735 33.124 53.837 1.00 59.14 O HETATM 1682 O HOH A 557 15.007 26.192 59.749 1.00 55.29 O HETATM 1683 O HOH A 558 18.840 7.521 69.104 1.00 53.96 O HETATM 1684 O HOH A 559 12.725 14.632 48.792 1.00 66.95 O HETATM 1685 O HOH A 560 14.647 -0.900 68.765 1.00 67.87 O HETATM 1686 O HOH A 561 25.924 17.000 41.751 1.00 41.59 O HETATM 1687 O HOH A 562 38.973 1.133 52.146 1.00 59.68 O HETATM 1688 O HOH A 563 35.784 6.086 42.712 1.00 48.09 O HETATM 1689 O HOH A 564 31.509 21.526 45.612 1.00 39.21 O HETATM 1690 O HOH A 565 21.609 10.250 51.952 1.00 57.50 O HETATM 1691 O HOH A 566 27.734 22.598 64.882 1.00 50.24 O HETATM 1692 O HOH A 567 19.052 -8.460 40.914 1.00 54.62 O HETATM 1693 O HOH A 568 11.211 -8.835 64.997 1.00 43.11 O HETATM 1694 O HOH A 569 15.434 26.175 44.250 1.00 66.46 O HETATM 1695 O HOH A 570 19.750 30.176 61.147 1.00 48.70 O HETATM 1696 O HOH A 571 20.099 13.463 39.466 1.00 65.63 O HETATM 1697 O HOH A 572 28.729 -6.517 41.413 1.00 46.85 O HETATM 1698 O HOH A 573 9.518 -9.528 63.146 1.00 49.79 O HETATM 1699 O HOH A 574 34.331 0.779 41.320 1.00 56.39 O HETATM 1700 O HOH A 575 25.131 30.706 59.871 1.00 52.36 O HETATM 1701 O HOH A 576 24.364 29.359 46.432 1.00 60.56 O HETATM 1702 O HOH A 577 16.430 6.428 68.612 1.00 64.65 O HETATM 1703 O HOH A 578 34.596 -14.332 50.183 1.00 58.24 O HETATM 1704 O HOH A 579 36.982 -4.548 47.924 1.00 51.05 O HETATM 1705 O HOH A 580 19.529 3.534 42.285 1.00 47.55 O HETATM 1706 O HOH A 581 18.970 21.124 39.823 1.00 78.09 O HETATM 1707 O HOH A 582 17.748 -5.792 41.153 1.00 55.24 O HETATM 1708 O HOH A 583 22.511 31.435 46.376 1.00 61.12 O HETATM 1709 O HOH A 584 10.020 -11.568 52.575 1.00 49.74 O HETATM 1710 O HOH A 585 20.536 18.962 44.214 1.00 56.05 O HETATM 1711 O HOH A 586 11.879 -11.429 65.732 1.00 64.28 O HETATM 1712 O HOH A 587 19.752 -13.277 45.394 1.00 56.35 O HETATM 1713 O HOH A 588 25.007 33.279 58.237 1.00 59.90 O HETATM 1714 O HOH A 589 18.471 11.790 49.333 1.00 49.47 O HETATM 1715 O HOH A 590 9.825 -7.892 67.397 1.00 46.86 O HETATM 1716 O HOH A 591 23.054 30.086 44.264 1.00 68.80 O HETATM 1717 O HOH A 592 7.327 -8.125 62.878 1.00 58.86 O HETATM 1718 O HOH A 593 23.060 17.531 44.162 1.00 64.61 O HETATM 1719 O HOH A 594 38.712 -3.671 50.019 1.00 60.42 O HETATM 1720 O HOH A 595 29.771 6.333 62.542 1.00 61.61 O HETATM 1721 O HOH A 596 15.671 -6.284 42.723 1.00 52.52 O HETATM 1722 O HOH A 597 8.495 28.477 53.780 1.00 49.59 O HETATM 1723 O HOH A 598 32.512 12.953 59.152 1.00 63.32 O HETATM 1724 O HOH A 599 13.127 24.302 41.563 1.00 52.03 O HETATM 1725 O HOH A 600 6.954 -10.124 52.231 1.00 56.81 O HETATM 1726 O HOH A 601 7.703 30.675 51.337 1.00 54.22 O HETATM 1727 O HOH A 602 31.746 11.760 61.610 1.00 60.19 O HETATM 1728 O HOH A 603 15.603 13.475 45.249 1.00 68.30 O HETATM 1729 O HOH A 604 7.784 -8.017 50.609 1.00 58.59 O HETATM 1730 O HOH A 605 19.530 33.646 56.677 1.00 65.16 O HETATM 1731 O HOH A 606 32.981 19.450 44.914 1.00 48.46 O HETATM 1732 O HOH A 607 8.079 -0.728 60.783 1.00 50.91 O HETATM 1733 O HOH A 608 36.502 21.708 51.613 1.00 57.72 O HETATM 1734 O HOH A 609 22.430 2.797 44.610 1.00 54.59 O HETATM 1735 O HOH A 610 6.500 32.632 53.433 1.00 59.75 O HETATM 1736 O HOH A 611 10.217 5.677 55.031 1.00 58.68 O HETATM 1737 O HOH A 612 32.540 22.743 61.187 1.00 68.52 O HETATM 1738 O HOH A 613 31.065 -2.610 40.120 1.00 56.39 O HETATM 1739 O HOH A 614 34.055 12.191 54.491 1.00 56.04 O HETATM 1740 O HOH A 615 14.195 15.834 41.971 1.00 63.10 O HETATM 1741 O HOH A 616 34.224 -16.170 59.648 1.00 68.43 O HETATM 1742 O HOH A 617 35.957 19.530 46.454 1.00 56.99 O HETATM 1743 O HOH A 618 9.062 30.260 60.425 1.00 65.05 O HETATM 1744 O HOH A 619 9.601 -12.150 61.837 1.00 49.54 O HETATM 1745 O HOH A 620 17.890 -11.274 44.317 1.00 61.38 O HETATM 1746 O HOH A 621 27.261 -4.424 68.997 1.00 54.08 O HETATM 1747 O HOH A 622 22.796 9.121 46.374 1.00 58.68 O HETATM 1748 O HOH A 623 22.236 -10.523 70.631 1.00 66.76 O HETATM 1749 O HOH A 624 29.429 -18.828 46.841 1.00 64.09 O HETATM 1750 O HOH A 625 28.178 8.978 60.740 1.00 47.28 O HETATM 1751 O HOH A 626 22.477 8.694 43.877 1.00 69.97 O HETATM 1752 O HOH A 627 12.574 5.269 54.594 1.00 39.95 O HETATM 1753 O HOH A 628 30.923 8.924 63.991 1.00 65.71 O HETATM 1754 O HOH A 629 19.875 6.796 53.896 1.00 56.31 O HETATM 1755 O HOH A 630 13.267 -17.478 54.595 1.00 69.32 O HETATM 1756 O HOH A 631 22.844 8.816 54.940 1.00 40.77 O HETATM 1757 O HOH A 632 21.126 -3.272 37.737 1.00 62.91 O HETATM 1758 O HOH A 633 38.199 -6.360 53.556 1.00 54.22 O HETATM 1759 O HOH A 634 31.611 -18.625 54.468 1.00 65.49 O HETATM 1760 O HOH A 635 10.027 0.583 50.879 1.00 60.75 O HETATM 1761 O HOH A 636 33.048 23.742 46.446 1.00 59.71 O HETATM 1762 O HOH A 637 8.338 16.023 56.652 1.00 64.90 O HETATM 1763 O HOH A 638 32.691 6.603 61.009 1.00 47.98 O HETATM 1764 O HOH A 639 6.585 -0.031 54.471 1.00 69.58 O HETATM 1765 O HOH A 640 23.135 -8.096 70.128 1.00 69.83 O HETATM 1766 O HOH A 641 24.877 19.354 42.476 1.00 55.44 O HETATM 1767 O HOH A 642 19.780 1.555 49.582 1.00 33.32 O HETATM 1768 O HOH A 643 15.238 0.130 71.120 1.00 58.13 O HETATM 1769 O HOH A 644 33.806 -5.481 63.689 1.00 69.57 O HETATM 1770 O HOH A 645 33.335 24.791 49.327 1.00 64.48 O HETATM 1771 O HOH A 646 8.445 19.878 55.683 1.00 53.21 O HETATM 1772 O HOH A 647 22.312 7.312 50.237 1.00 58.61 O HETATM 1773 O HOH A 648 30.952 0.026 39.685 1.00 60.91 O HETATM 1774 O HOH A 649 14.244 -18.895 61.478 1.00 61.06 O HETATM 1775 O HOH A 650 15.210 8.713 51.545 1.00 64.98 O HETATM 1776 O HOH A 651 18.615 4.970 47.581 1.00 64.35 O HETATM 1777 O HOH A 652 12.935 27.146 60.517 1.00 44.09 O HETATM 1778 O HOH A 653 19.700 9.709 49.498 1.00 73.19 O HETATM 1779 O HOH A 654 9.543 -14.406 52.885 1.00 70.15 O HETATM 1780 O HOH A 655 18.511 -18.169 61.397 1.00 69.00 O HETATM 1781 O HOH A 656 26.553 22.578 41.964 1.00 64.05 O HETATM 1782 O HOH A 657 22.855 30.577 61.815 1.00 55.53 O HETATM 1783 O HOH A 658 23.064 -14.442 44.073 1.00 64.21 O CONECT 217 1622 CONECT 1606 1607 1612 1616 CONECT 1607 1606 1608 1613 CONECT 1608 1607 1609 1614 CONECT 1609 1608 1610 1615 CONECT 1610 1609 1611 1616 CONECT 1611 1610 1617 CONECT 1612 1606 1618 CONECT 1613 1607 CONECT 1614 1608 CONECT 1615 1609 CONECT 1616 1606 1610 CONECT 1617 1611 CONECT 1618 1612 1619 1620 1621 CONECT 1619 1618 CONECT 1620 1618 CONECT 1621 1618 CONECT 1622 217 1639 1670 1777 CONECT 1639 1622 CONECT 1670 1622 CONECT 1777 1622 MASTER 341 0 2 13 7 0 0 6 1782 1 21 16 END