data_2B0K # _entry.id 2B0K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2B0K pdb_00002b0k 10.2210/pdb2b0k/pdb NDB DD0074 ? ? RCSB RCSB034524 ? ? WWPDB D_1000034524 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type NDB GDL009 'DNA PART OF NDB ENTRY GDL009' unspecified PDB 2DBE 'DNA PART OF PDB ENTRY 2DBE' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2B0K _pdbx_database_status.recvd_initial_deposition_date 2005-09-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Miao, Y.' 1 'Lee, M.P.' 2 'Parkinson, G.N.' 3 'Batista-Parra, A.' 4 'Ismail, M.A.' 5 'Neidle, S.' 6 'Boykin, D.W.' 7 'Wilson, W.D.' 8 # _citation.id primary _citation.title 'Out-of-Shape DNA Minor Groove Binders: Induced Fit Interactions of Heterocyclic Dications with the DNA Minor Groove.' _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 14701 _citation.page_last 14708 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16274217 _citation.pdbx_database_id_DOI 10.1021/bi051791q # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Miao, Y.' 1 ? primary 'Lee, M.P.' 2 ? primary 'Parkinson, G.N.' 3 ? primary 'Batista-Parra, A.' 4 ? primary 'Ismail, M.A.' 5 ? primary 'Neidle, S.' 6 ? primary 'Boykin, D.W.' 7 ? primary 'Wilson, W.D.' 8 ? # _cell.entry_id 2B0K _cell.length_a 24.288 _cell.length_b 40.068 _cell.length_c 65.989 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B0K _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'" 3663.392 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "2-(4'-AMIDINOBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-AMIDINE" 354.408 1 ? ? ? ? 4 water nat water 18.015 82 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'AT-RICH REGION IN THE GENOME OF ORGANISMS.' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2B0K _struct_ref.pdbx_db_accession 2B0K _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2B0K A 1 ? 12 ? 2B0K 1 ? 12 ? 1 12 2 1 2B0K B 1 ? 12 ? 2B0K 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight D2A non-polymer . "2-(4'-AMIDINOBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-AMIDINE" DB921 'C21 H18 N6' 354.408 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.entry_id 2B0K _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_percent_sol 54.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'MAGNESIUM CHLORIDE, DNA, COMPOUND DB921, MPD, SODIUM CACODYLATE BUFFER, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K, pH 6.50' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'MAGNESIUM CHLORIDE' ? ? ? 1 2 1 DB921 ? ? ? 1 3 1 MPD ? ? ? 1 4 1 'SODIUM CACODYLATE' ? ? ? 1 5 1 H2O ? ? ? 1 6 2 'MAGNESIUM CHLORIDE' ? ? ? 1 7 2 DB921 ? ? ? 1 8 2 'SODIUM CACODYLATE' ? ? ? 1 9 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 105.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2005-05-05 _diffrn_detector.details 'OSMIC FOCUSING MIRROR SYSTEM' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54178 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2B0K _reflns.observed_criterion_sigma_I -2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.000 _reflns.d_resolution_high 1.640 _reflns.number_obs 8055 _reflns.number_all ? _reflns.percent_possible_obs 96.6 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 36.1900 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.160 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.64 _reflns_shell.d_res_low 1.70 _reflns_shell.percent_possible_all 96.4 _reflns_shell.Rmerge_I_obs 0.197 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.430 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2B0K _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 7968 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 1.64 _refine.ls_percent_reflns_obs 87.2 _refine.ls_R_factor_obs 0.2286 _refine.ls_R_factor_all 0.2307 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.3002 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.84 _refine.ls_number_reflns_R_free 784 _refine.ls_number_parameters 2399 _refine.ls_number_restraints 2543 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;USED WEIGHTED FULL MATRIX LEAST SQUARES PROCEDURE. ANISOTROPIC SCALING APPLIED BY THE METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56 ; _refine.pdbx_starting_model 'DNA PART OF NDB ENTRY GDL009 OR PDB ENTRY 2DBE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2B0K _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.occupancy_sum_non_hydrogen 596.00 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 76 _refine_hist.number_atoms_total 596 _refine_hist.d_res_high 1.64 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.009 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.037 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.026 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.067 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 2B0K _pdbx_refine.R_factor_all_no_cutoff 0.2307 _pdbx_refine.R_factor_obs_no_cutoff 0.2286 _pdbx_refine.free_R_factor_no_cutoff 0.3002 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 9.84 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 784 _pdbx_refine.R_factor_all_4sig_cutoff 0.2168 _pdbx_refine.R_factor_obs_4sig_cutoff 0.2144 _pdbx_refine.free_R_factor_4sig_cutoff 0.2846 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 9.84 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 683 _pdbx_refine.number_reflns_obs_4sig_cutoff 6942 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 2B0K _struct.title 'Crystal structure of the DB921-D(CGCGAATTCGCG)2 complex.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2B0K _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;NUCLEIC ACIDS, DNA, DOUBLE HELIX, MINOR GROOVE, DNA MINOR GROOVE BINDER, DNA MINOR GROOVE-LIGAND COMPLEX, DB921, A2T2, DICKERSON AND DREW DNA, CRYSTAL STRUCTURE OF B-DNA, DNA-DRUG COMPLEX, MAGNESIUM-WATER COMPLEX, HYDRATED MAGNESIUM, DNA HYDRATION. ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 104 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 105 1_555 ? ? ? ? ? ? ? 2.125 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 108 1_555 ? ? ? ? ? ? ? 2.125 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 B HOH 103 1_555 ? ? ? ? ? ? ? 2.124 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 B HOH 106 1_555 ? ? ? ? ? ? ? 2.125 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 B HOH 107 1_555 ? ? ? ? ? ? ? 2.125 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 26 ? 6 'BINDING SITE FOR RESIDUE MG A 26' AC2 Software A D2A 25 ? 8 'BINDING SITE FOR RESIDUE D2A A 25' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH E . ? HOH A 104 . ? 1_555 ? 2 AC1 6 HOH E . ? HOH A 105 . ? 1_555 ? 3 AC1 6 HOH E . ? HOH A 108 . ? 1_555 ? 4 AC1 6 HOH F . ? HOH B 103 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH B 106 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH B 107 . ? 1_555 ? 7 AC2 8 DA A 6 ? DA A 6 . ? 1_555 ? 8 AC2 8 DT A 7 ? DT A 7 . ? 1_555 ? 9 AC2 8 DT A 8 ? DT A 8 . ? 1_555 ? 10 AC2 8 DC A 9 ? DC A 9 . ? 1_555 ? 11 AC2 8 DA B 6 ? DA B 18 . ? 1_555 ? 12 AC2 8 DT B 7 ? DT B 19 . ? 1_555 ? 13 AC2 8 DT B 8 ? DT B 20 . ? 1_555 ? 14 AC2 8 DC B 9 ? DC B 21 . ? 1_555 ? # _database_PDB_matrix.entry_id 2B0K _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2B0K _atom_sites.fract_transf_matrix[1][1] 0.041173 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024958 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015154 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 26 26 MG MO6 A . D 3 D2A 1 25 25 D2A D2A A . E 4 HOH 1 27 27 HOH HOH A . E 4 HOH 2 31 31 HOH HOH A . E 4 HOH 3 34 34 HOH HOH A . E 4 HOH 4 35 35 HOH HOH A . E 4 HOH 5 36 36 HOH HOH A . E 4 HOH 6 37 37 HOH HOH A . E 4 HOH 7 39 39 HOH HOH A . E 4 HOH 8 40 40 HOH HOH A . E 4 HOH 9 41 41 HOH HOH A . E 4 HOH 10 42 42 HOH HOH A . E 4 HOH 11 43 43 HOH HOH A . E 4 HOH 12 44 44 HOH HOH A . E 4 HOH 13 45 45 HOH HOH A . E 4 HOH 14 47 47 HOH HOH A . E 4 HOH 15 48 48 HOH HOH A . E 4 HOH 16 49 49 HOH HOH A . E 4 HOH 17 50 50 HOH HOH A . E 4 HOH 18 51 51 HOH HOH A . E 4 HOH 19 52 52 HOH HOH A . E 4 HOH 20 53 53 HOH HOH A . E 4 HOH 21 55 55 HOH HOH A . E 4 HOH 22 57 57 HOH HOH A . E 4 HOH 23 58 58 HOH HOH A . E 4 HOH 24 59 59 HOH HOH A . E 4 HOH 25 60 60 HOH HOH A . E 4 HOH 26 62 62 HOH HOH A . E 4 HOH 27 64 64 HOH HOH A . E 4 HOH 28 67 67 HOH HOH A . E 4 HOH 29 68 68 HOH HOH A . E 4 HOH 30 69 69 HOH HOH A . E 4 HOH 31 72 72 HOH HOH A . E 4 HOH 32 73 73 HOH HOH A . E 4 HOH 33 74 74 HOH HOH A . E 4 HOH 34 76 76 HOH HOH A . E 4 HOH 35 77 77 HOH HOH A . E 4 HOH 36 79 79 HOH HOH A . E 4 HOH 37 82 82 HOH HOH A . E 4 HOH 38 84 84 HOH HOH A . E 4 HOH 39 85 85 HOH HOH A . E 4 HOH 40 86 86 HOH HOH A . E 4 HOH 41 88 88 HOH HOH A . E 4 HOH 42 89 89 HOH HOH A . E 4 HOH 43 91 91 HOH HOH A . E 4 HOH 44 92 92 HOH HOH A . E 4 HOH 45 93 93 HOH HOH A . E 4 HOH 46 94 94 HOH HOH A . E 4 HOH 47 97 97 HOH HOH A . E 4 HOH 48 99 99 HOH HOH A . E 4 HOH 49 104 26 HOH MO6 A . E 4 HOH 50 105 26 HOH MO6 A . E 4 HOH 51 108 26 HOH MO6 A . F 4 HOH 1 28 28 HOH HOH B . F 4 HOH 2 29 29 HOH HOH B . F 4 HOH 3 30 30 HOH HOH B . F 4 HOH 4 32 32 HOH HOH B . F 4 HOH 5 33 33 HOH HOH B . F 4 HOH 6 38 38 HOH HOH B . F 4 HOH 7 46 46 HOH HOH B . F 4 HOH 8 54 54 HOH HOH B . F 4 HOH 9 56 56 HOH HOH B . F 4 HOH 10 61 61 HOH HOH B . F 4 HOH 11 63 63 HOH HOH B . F 4 HOH 12 65 65 HOH HOH B . F 4 HOH 13 66 66 HOH HOH B . F 4 HOH 14 70 70 HOH HOH B . F 4 HOH 15 71 71 HOH HOH B . F 4 HOH 16 75 75 HOH HOH B . F 4 HOH 17 78 78 HOH HOH B . F 4 HOH 18 80 80 HOH HOH B . F 4 HOH 19 81 81 HOH HOH B . F 4 HOH 20 83 83 HOH HOH B . F 4 HOH 21 87 87 HOH HOH B . F 4 HOH 22 90 90 HOH HOH B . F 4 HOH 23 95 95 HOH HOH B . F 4 HOH 24 96 96 HOH HOH B . F 4 HOH 25 98 98 HOH HOH B . F 4 HOH 26 100 100 HOH HOH B . F 4 HOH 27 101 101 HOH HOH B . F 4 HOH 28 102 102 HOH HOH B . F 4 HOH 29 103 26 HOH MO6 B . F 4 HOH 30 106 26 HOH MO6 B . F 4 HOH 31 107 26 HOH MO6 B . # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'minor groove binder' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 104 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 105 ? 1_555 90.0 ? 2 O ? E HOH . ? A HOH 104 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 108 ? 1_555 90.0 ? 3 O ? E HOH . ? A HOH 105 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 108 ? 1_555 90.0 ? 4 O ? E HOH . ? A HOH 104 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 103 ? 1_555 90.0 ? 5 O ? E HOH . ? A HOH 105 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 103 ? 1_555 180.0 ? 6 O ? E HOH . ? A HOH 108 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 103 ? 1_555 90.0 ? 7 O ? E HOH . ? A HOH 104 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 106 ? 1_555 179.9 ? 8 O ? E HOH . ? A HOH 105 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 106 ? 1_555 90.0 ? 9 O ? E HOH . ? A HOH 108 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 106 ? 1_555 89.9 ? 10 O ? F HOH . ? B HOH 103 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 106 ? 1_555 90.0 ? 11 O ? E HOH . ? A HOH 104 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 107 ? 1_555 90.0 ? 12 O ? E HOH . ? A HOH 105 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 107 ? 1_555 90.0 ? 13 O ? E HOH . ? A HOH 108 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 107 ? 1_555 179.9 ? 14 O ? F HOH . ? B HOH 103 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 107 ? 1_555 90.0 ? 15 O ? F HOH . ? B HOH 106 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 107 ? 1_555 90.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-22 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.value' 12 5 'Structure model' '_struct_conn.pdbx_dist_value' 13 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 14 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 DENZO 'data reduction' . ? 4 CNS phasing . ? 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal D2A C1 C Y N 1 D2A C2 C Y N 2 D2A C3 C Y N 3 D2A C4 C Y N 4 D2A C5 C Y N 5 D2A C6 C Y N 6 D2A C7 C Y N 7 D2A C8 C Y N 8 D2A C9 C Y N 9 D2A C10 C Y N 10 D2A C11 C Y N 11 D2A C12 C Y N 12 D2A C13 C Y N 13 D2A N14 N Y N 14 D2A C15 C Y N 15 D2A C16 C Y N 16 D2A N17 N Y N 17 D2A C18 C Y N 18 D2A C19 C Y N 19 D2A C20 C Y N 20 D2A C21 C Y N 21 D2A C22 C N N 22 D2A N23 N N N 23 D2A N24 N N N 24 D2A C25 C N N 25 D2A N26 N N N 26 D2A N27 N N N 27 D2A H1 H N N 28 D2A H2 H N N 29 D2A H4 H N N 30 D2A H5 H N N 31 D2A H8 H N N 32 D2A H9 H N N 33 D2A H11 H N N 34 D2A H12 H N N 35 D2A H17 H N N 36 D2A H18 H N N 37 D2A H19 H N N 38 D2A H20 H N N 39 D2A H231 H N N 40 D2A H232 H N N 41 D2A H24 H N N 42 D2A H261 H N N 43 D2A H262 H N N 44 D2A H27 H N N 45 DA OP3 O N N 46 DA P P N N 47 DA OP1 O N N 48 DA OP2 O N N 49 DA "O5'" O N N 50 DA "C5'" C N N 51 DA "C4'" C N R 52 DA "O4'" O N N 53 DA "C3'" C N S 54 DA "O3'" O N N 55 DA "C2'" C N N 56 DA "C1'" C N R 57 DA N9 N Y N 58 DA C8 C Y N 59 DA N7 N Y N 60 DA C5 C Y N 61 DA C6 C Y N 62 DA N6 N N N 63 DA N1 N Y N 64 DA C2 C Y N 65 DA N3 N Y N 66 DA C4 C Y N 67 DA HOP3 H N N 68 DA HOP2 H N N 69 DA "H5'" H N N 70 DA "H5''" H N N 71 DA "H4'" H N N 72 DA "H3'" H N N 73 DA "HO3'" H N N 74 DA "H2'" H N N 75 DA "H2''" H N N 76 DA "H1'" H N N 77 DA H8 H N N 78 DA H61 H N N 79 DA H62 H N N 80 DA H2 H N N 81 DC OP3 O N N 82 DC P P N N 83 DC OP1 O N N 84 DC OP2 O N N 85 DC "O5'" O N N 86 DC "C5'" C N N 87 DC "C4'" C N R 88 DC "O4'" O N N 89 DC "C3'" C N S 90 DC "O3'" O N N 91 DC "C2'" C N N 92 DC "C1'" C N R 93 DC N1 N N N 94 DC C2 C N N 95 DC O2 O N N 96 DC N3 N N N 97 DC C4 C N N 98 DC N4 N N N 99 DC C5 C N N 100 DC C6 C N N 101 DC HOP3 H N N 102 DC HOP2 H N N 103 DC "H5'" H N N 104 DC "H5''" H N N 105 DC "H4'" H N N 106 DC "H3'" H N N 107 DC "HO3'" H N N 108 DC "H2'" H N N 109 DC "H2''" H N N 110 DC "H1'" H N N 111 DC H41 H N N 112 DC H42 H N N 113 DC H5 H N N 114 DC H6 H N N 115 DG OP3 O N N 116 DG P P N N 117 DG OP1 O N N 118 DG OP2 O N N 119 DG "O5'" O N N 120 DG "C5'" C N N 121 DG "C4'" C N R 122 DG "O4'" O N N 123 DG "C3'" C N S 124 DG "O3'" O N N 125 DG "C2'" C N N 126 DG "C1'" C N R 127 DG N9 N Y N 128 DG C8 C Y N 129 DG N7 N Y N 130 DG C5 C Y N 131 DG C6 C N N 132 DG O6 O N N 133 DG N1 N N N 134 DG C2 C N N 135 DG N2 N N N 136 DG N3 N N N 137 DG C4 C Y N 138 DG HOP3 H N N 139 DG HOP2 H N N 140 DG "H5'" H N N 141 DG "H5''" H N N 142 DG "H4'" H N N 143 DG "H3'" H N N 144 DG "HO3'" H N N 145 DG "H2'" H N N 146 DG "H2''" H N N 147 DG "H1'" H N N 148 DG H8 H N N 149 DG H1 H N N 150 DG H21 H N N 151 DG H22 H N N 152 DT OP3 O N N 153 DT P P N N 154 DT OP1 O N N 155 DT OP2 O N N 156 DT "O5'" O N N 157 DT "C5'" C N N 158 DT "C4'" C N R 159 DT "O4'" O N N 160 DT "C3'" C N S 161 DT "O3'" O N N 162 DT "C2'" C N N 163 DT "C1'" C N R 164 DT N1 N N N 165 DT C2 C N N 166 DT O2 O N N 167 DT N3 N N N 168 DT C4 C N N 169 DT O4 O N N 170 DT C5 C N N 171 DT C7 C N N 172 DT C6 C N N 173 DT HOP3 H N N 174 DT HOP2 H N N 175 DT "H5'" H N N 176 DT "H5''" H N N 177 DT "H4'" H N N 178 DT "H3'" H N N 179 DT "HO3'" H N N 180 DT "H2'" H N N 181 DT "H2''" H N N 182 DT "H1'" H N N 183 DT H3 H N N 184 DT H71 H N N 185 DT H72 H N N 186 DT H73 H N N 187 DT H6 H N N 188 HOH O O N N 189 HOH H1 H N N 190 HOH H2 H N N 191 MG MG MG N N 192 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D2A C1 C2 doub Y N 1 D2A C1 C6 sing Y N 2 D2A C1 H1 sing N N 3 D2A C2 C3 sing Y N 4 D2A C2 H2 sing N N 5 D2A C3 C4 doub Y N 6 D2A C3 C7 sing Y N 7 D2A C4 C5 sing Y N 8 D2A C4 H4 sing N N 9 D2A C5 C6 doub Y N 10 D2A C5 H5 sing N N 11 D2A C6 C25 sing N N 12 D2A C7 C8 doub Y N 13 D2A C7 C12 sing Y N 14 D2A C8 C9 sing Y N 15 D2A C8 H8 sing N N 16 D2A C9 C10 doub Y N 17 D2A C9 H9 sing N N 18 D2A C10 C11 sing Y N 19 D2A C10 C13 sing Y N 20 D2A C11 C12 doub Y N 21 D2A C11 H11 sing N N 22 D2A C12 H12 sing N N 23 D2A C13 N14 doub Y N 24 D2A C13 N17 sing Y N 25 D2A N14 C15 sing Y N 26 D2A C15 C16 doub Y N 27 D2A C15 C19 sing Y N 28 D2A C16 N17 sing Y N 29 D2A C16 C18 sing Y N 30 D2A N17 H17 sing N N 31 D2A C18 C21 doub Y N 32 D2A C18 H18 sing N N 33 D2A C19 C20 doub Y N 34 D2A C19 H19 sing N N 35 D2A C20 C21 sing Y N 36 D2A C20 H20 sing N N 37 D2A C21 C22 sing N N 38 D2A C22 N23 sing N N 39 D2A C22 N24 doub N E 40 D2A N23 H231 sing N N 41 D2A N23 H232 sing N N 42 D2A N24 H24 sing N N 43 D2A C25 N26 sing N N 44 D2A C25 N27 doub N N 45 D2A N26 H261 sing N N 46 D2A N26 H262 sing N N 47 D2A N27 H27 sing N N 48 DA OP3 P sing N N 49 DA OP3 HOP3 sing N N 50 DA P OP1 doub N N 51 DA P OP2 sing N N 52 DA P "O5'" sing N N 53 DA OP2 HOP2 sing N N 54 DA "O5'" "C5'" sing N N 55 DA "C5'" "C4'" sing N N 56 DA "C5'" "H5'" sing N N 57 DA "C5'" "H5''" sing N N 58 DA "C4'" "O4'" sing N N 59 DA "C4'" "C3'" sing N N 60 DA "C4'" "H4'" sing N N 61 DA "O4'" "C1'" sing N N 62 DA "C3'" "O3'" sing N N 63 DA "C3'" "C2'" sing N N 64 DA "C3'" "H3'" sing N N 65 DA "O3'" "HO3'" sing N N 66 DA "C2'" "C1'" sing N N 67 DA "C2'" "H2'" sing N N 68 DA "C2'" "H2''" sing N N 69 DA "C1'" N9 sing N N 70 DA "C1'" "H1'" sing N N 71 DA N9 C8 sing Y N 72 DA N9 C4 sing Y N 73 DA C8 N7 doub Y N 74 DA C8 H8 sing N N 75 DA N7 C5 sing Y N 76 DA C5 C6 sing Y N 77 DA C5 C4 doub Y N 78 DA C6 N6 sing N N 79 DA C6 N1 doub Y N 80 DA N6 H61 sing N N 81 DA N6 H62 sing N N 82 DA N1 C2 sing Y N 83 DA C2 N3 doub Y N 84 DA C2 H2 sing N N 85 DA N3 C4 sing Y N 86 DC OP3 P sing N N 87 DC OP3 HOP3 sing N N 88 DC P OP1 doub N N 89 DC P OP2 sing N N 90 DC P "O5'" sing N N 91 DC OP2 HOP2 sing N N 92 DC "O5'" "C5'" sing N N 93 DC "C5'" "C4'" sing N N 94 DC "C5'" "H5'" sing N N 95 DC "C5'" "H5''" sing N N 96 DC "C4'" "O4'" sing N N 97 DC "C4'" "C3'" sing N N 98 DC "C4'" "H4'" sing N N 99 DC "O4'" "C1'" sing N N 100 DC "C3'" "O3'" sing N N 101 DC "C3'" "C2'" sing N N 102 DC "C3'" "H3'" sing N N 103 DC "O3'" "HO3'" sing N N 104 DC "C2'" "C1'" sing N N 105 DC "C2'" "H2'" sing N N 106 DC "C2'" "H2''" sing N N 107 DC "C1'" N1 sing N N 108 DC "C1'" "H1'" sing N N 109 DC N1 C2 sing N N 110 DC N1 C6 sing N N 111 DC C2 O2 doub N N 112 DC C2 N3 sing N N 113 DC N3 C4 doub N N 114 DC C4 N4 sing N N 115 DC C4 C5 sing N N 116 DC N4 H41 sing N N 117 DC N4 H42 sing N N 118 DC C5 C6 doub N N 119 DC C5 H5 sing N N 120 DC C6 H6 sing N N 121 DG OP3 P sing N N 122 DG OP3 HOP3 sing N N 123 DG P OP1 doub N N 124 DG P OP2 sing N N 125 DG P "O5'" sing N N 126 DG OP2 HOP2 sing N N 127 DG "O5'" "C5'" sing N N 128 DG "C5'" "C4'" sing N N 129 DG "C5'" "H5'" sing N N 130 DG "C5'" "H5''" sing N N 131 DG "C4'" "O4'" sing N N 132 DG "C4'" "C3'" sing N N 133 DG "C4'" "H4'" sing N N 134 DG "O4'" "C1'" sing N N 135 DG "C3'" "O3'" sing N N 136 DG "C3'" "C2'" sing N N 137 DG "C3'" "H3'" sing N N 138 DG "O3'" "HO3'" sing N N 139 DG "C2'" "C1'" sing N N 140 DG "C2'" "H2'" sing N N 141 DG "C2'" "H2''" sing N N 142 DG "C1'" N9 sing N N 143 DG "C1'" "H1'" sing N N 144 DG N9 C8 sing Y N 145 DG N9 C4 sing Y N 146 DG C8 N7 doub Y N 147 DG C8 H8 sing N N 148 DG N7 C5 sing Y N 149 DG C5 C6 sing N N 150 DG C5 C4 doub Y N 151 DG C6 O6 doub N N 152 DG C6 N1 sing N N 153 DG N1 C2 sing N N 154 DG N1 H1 sing N N 155 DG C2 N2 sing N N 156 DG C2 N3 doub N N 157 DG N2 H21 sing N N 158 DG N2 H22 sing N N 159 DG N3 C4 sing N N 160 DT OP3 P sing N N 161 DT OP3 HOP3 sing N N 162 DT P OP1 doub N N 163 DT P OP2 sing N N 164 DT P "O5'" sing N N 165 DT OP2 HOP2 sing N N 166 DT "O5'" "C5'" sing N N 167 DT "C5'" "C4'" sing N N 168 DT "C5'" "H5'" sing N N 169 DT "C5'" "H5''" sing N N 170 DT "C4'" "O4'" sing N N 171 DT "C4'" "C3'" sing N N 172 DT "C4'" "H4'" sing N N 173 DT "O4'" "C1'" sing N N 174 DT "C3'" "O3'" sing N N 175 DT "C3'" "C2'" sing N N 176 DT "C3'" "H3'" sing N N 177 DT "O3'" "HO3'" sing N N 178 DT "C2'" "C1'" sing N N 179 DT "C2'" "H2'" sing N N 180 DT "C2'" "H2''" sing N N 181 DT "C1'" N1 sing N N 182 DT "C1'" "H1'" sing N N 183 DT N1 C2 sing N N 184 DT N1 C6 sing N N 185 DT C2 O2 doub N N 186 DT C2 N3 sing N N 187 DT N3 C4 sing N N 188 DT N3 H3 sing N N 189 DT C4 O4 doub N N 190 DT C4 C5 sing N N 191 DT C5 C7 sing N N 192 DT C5 C6 doub N N 193 DT C7 H71 sing N N 194 DT C7 H72 sing N N 195 DT C7 H73 sing N N 196 DT C6 H6 sing N N 197 HOH O H1 sing N N 198 HOH O H2 sing N N 199 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2B0K 'double helix' 2B0K 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.291 -0.190 0.110 3.664 -21.433 2.466 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.065 -0.103 0.018 -2.603 -7.106 -3.894 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.129 -0.022 0.415 -3.113 -8.278 1.857 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.235 -0.201 0.162 13.015 -14.277 -1.809 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.257 -0.025 0.085 11.573 -23.795 2.408 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.293 -0.036 0.141 2.571 -24.016 8.083 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 0.049 -0.124 0.139 -1.767 -22.040 6.909 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.099 -0.022 0.069 -7.618 -22.712 3.431 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.253 -0.150 -0.323 -8.607 -14.290 -1.828 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 0.032 -0.127 -0.045 8.524 -5.534 3.801 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.223 -0.306 0.561 1.153 -25.097 -8.039 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.471 -0.122 -0.079 12.030 20.227 0.300 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.474 0.126 3.524 1.451 8.678 34.432 -1.166 1.007 3.431 14.371 -2.403 35.506 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.897 0.563 3.289 -1.247 -2.105 39.213 1.088 -1.482 3.227 -3.132 1.856 39.287 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.594 0.587 3.056 2.464 10.118 27.691 -0.910 1.666 3.016 20.255 -4.933 29.549 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.036 0.004 3.398 -0.339 -1.000 39.207 0.130 -0.096 3.396 -1.490 0.505 39.220 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.494 -0.323 3.380 0.970 4.562 36.251 -1.164 -0.651 3.328 7.295 -1.550 36.540 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.071 -0.694 3.310 -0.036 -0.972 30.263 -1.129 -0.143 3.330 -1.862 0.069 30.278 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.403 -0.318 3.358 2.138 1.985 35.334 -0.819 0.981 3.306 3.263 -3.514 35.450 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.056 0.299 3.250 2.778 -1.163 40.960 0.552 0.379 3.230 -1.660 -3.964 41.066 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.519 1.263 3.106 -3.283 8.490 27.803 0.662 -1.741 3.260 17.098 6.611 29.227 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.144 0.910 3.700 -7.512 -15.515 42.214 2.712 0.737 3.334 -20.546 9.948 45.448 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.702 0.670 3.360 6.979 -12.714 34.305 2.824 -1.697 3.198 -20.459 -11.230 37.160 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "2-(4'-AMIDINOBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-AMIDINE" D2A 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2DBE _pdbx_initial_refinement_model.details 'DNA PART OF NDB ENTRY GDL009 OR PDB ENTRY 2DBE' #