HEADER IMMUNE SYSTEM 15-SEP-05 2B1A TITLE CRYSTAL STRUCTURE ANALYSIS OF ANTI-HIV-1 V3 FAB 2219 IN COMPLEX WITH TITLE 2 UG1033 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB 2219, LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: LIGHT CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB 2219, HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 FRAGMENT: HEAVY CHAIN; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: UG1033 PEPTIDE OF EXTERIOR MEMBRANE GLYCOPROTEIN GP120; COMPND 11 CHAIN: P; COMPND 12 FRAGMENT: RESIDUES 31-53; COMPND 13 SYNONYM: GP120; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BLOOD; SOURCE 6 CELL: PERIPHERAL BLOOD CELLS; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 ORGAN: BLOOD; SOURCE 12 CELL: PERIPHERAL BLOOD CELLS; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: THIS SEQUENCE OCCURS IN HUMAN IMMUNODEFICIENCY VIRUS SOURCE 16 TYPE 1 (ISOLATE MN) KEYWDS FAB-PEPTIDE COMPLEX; HIV-1; GP120; V3 LOOP, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.L.STANFIELD,M.K.GORNY,S.ZOLLA-PAZNER,I.A.WILSON REVDAT 5 23-AUG-23 2B1A 1 REMARK REVDAT 4 24-JUL-19 2B1A 1 REMARK REVDAT 3 13-JUL-11 2B1A 1 VERSN REVDAT 2 24-FEB-09 2B1A 1 VERSN REVDAT 1 04-JUL-06 2B1A 0 JRNL AUTH R.L.STANFIELD,M.K.GORNY,S.ZOLLA-PAZNER,I.A.WILSON JRNL TITL CRYSTAL STRUCTURES OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 JRNL TITL 2 (HIV-1) NEUTRALIZING ANTIBODY 2219 IN COMPLEX WITH THREE JRNL TITL 3 DIFFERENT V3 PEPTIDES REVEAL A NEW BINDING MODE FOR HIV-1 JRNL TITL 4 CROSS-REACTIVITY. JRNL REF J.VIROL. V. 80 6093 2006 JRNL REFN ISSN 0022-538X JRNL PMID 16731948 JRNL DOI 10.1128/JVI.00205-06 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1208 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3440 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 56.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : 0.60000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.302 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.155 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3535 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2366 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4818 ; 1.328 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5785 ; 0.849 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 6.726 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;33.416 ;24.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 539 ;14.904 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.236 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 528 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3951 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 690 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 528 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2311 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1632 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1931 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 128 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.110 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 17 ; 0.246 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.074 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2893 ; 0.628 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 920 ; 0.099 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3663 ; 0.739 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1529 ; 1.222 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1155 ; 1.830 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 107 REMARK 3 ORIGIN FOR THE GROUP (A): 57.5546 47.6983 79.9572 REMARK 3 T TENSOR REMARK 3 T11: -0.1681 T22: -0.0999 REMARK 3 T33: -0.0109 T12: 0.0696 REMARK 3 T13: 0.0674 T23: 0.2511 REMARK 3 L TENSOR REMARK 3 L11: 2.1318 L22: 3.5899 REMARK 3 L33: 9.3013 L12: 1.7267 REMARK 3 L13: 0.6079 L23: 0.0597 REMARK 3 S TENSOR REMARK 3 S11: -0.1056 S12: 0.6591 S13: 0.8465 REMARK 3 S21: -0.3049 S22: 0.4642 S23: 0.3970 REMARK 3 S31: -0.9478 S32: -0.3733 S33: -0.3586 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 108 L 212 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3635 30.4901 61.6951 REMARK 3 T TENSOR REMARK 3 T11: 0.1159 T22: -0.1673 REMARK 3 T33: 0.0431 T12: -0.0032 REMARK 3 T13: -0.3476 T23: 0.0631 REMARK 3 L TENSOR REMARK 3 L11: 7.6256 L22: 8.2275 REMARK 3 L33: 6.7096 L12: 2.9285 REMARK 3 L13: -0.3825 L23: -3.2221 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: 0.1094 S13: 0.5159 REMARK 3 S21: -1.1783 S22: 0.4192 S23: 1.4037 REMARK 3 S31: 0.5500 S32: -0.6781 S33: -0.4099 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 113 REMARK 3 RESIDUE RANGE : P 303 P 320 REMARK 3 ORIGIN FOR THE GROUP (A): 55.7338 33.7694 94.7209 REMARK 3 T TENSOR REMARK 3 T11: -0.4167 T22: -0.2661 REMARK 3 T33: -0.3065 T12: 0.0493 REMARK 3 T13: 0.0516 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 4.1923 L22: 3.3913 REMARK 3 L33: 1.8669 L12: 2.4667 REMARK 3 L13: 0.4789 L23: 0.3581 REMARK 3 S TENSOR REMARK 3 S11: 0.0976 S12: -0.0006 S13: 0.3545 REMARK 3 S21: 0.0982 S22: -0.0282 S23: 0.1113 REMARK 3 S31: -0.2599 S32: -0.1268 S33: -0.0694 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 114 H 229 REMARK 3 ORIGIN FOR THE GROUP (A): 38.2553 14.8096 60.0755 REMARK 3 T TENSOR REMARK 3 T11: 1.0551 T22: -0.2147 REMARK 3 T33: -0.1724 T12: -0.0474 REMARK 3 T13: -0.1860 T23: -0.1162 REMARK 3 L TENSOR REMARK 3 L11: 4.3826 L22: 8.7053 REMARK 3 L33: 14.2058 L12: 2.2038 REMARK 3 L13: -0.6787 L23: -1.8141 REMARK 3 S TENSOR REMARK 3 S11: -0.4917 S12: 0.6005 S13: -0.3217 REMARK 3 S21: -3.2264 S22: 0.2931 S23: 0.5536 REMARK 3 S31: 2.2095 S32: -0.2242 S33: 0.1986 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2B1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98397 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24986 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.348 REMARK 200 RESOLUTION RANGE LOW (A) : 31.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 31.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48800 REMARK 200 FOR SHELL : 2.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2B0S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13.75% PEG 20000, 0.05M DISODIUM REMARK 280 TARTRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.35800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.50900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.44500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.50900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.35800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.44500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN P 301 REMARK 465 ASN P 302 REMARK 465 GLY P 321 REMARK 465 ASP P 322 REMARK 465 ILE P 323 REMARK 465 ILE P 324 REMARK 465 GLY P 325 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN H 162 CG ASN H 162 OD1 0.187 REMARK 500 ASN H 162 CG ASN H 162 ND2 0.234 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 2 52.95 -92.60 REMARK 500 ASN L 27B -79.78 -135.73 REMARK 500 ASN L 51 -51.08 75.25 REMARK 500 ASP L 52 12.90 -146.07 REMARK 500 LEU L 106A 99.38 -60.39 REMARK 500 ASP L 151 -116.58 55.46 REMARK 500 ASN L 171 -2.74 73.54 REMARK 500 ASP H 100E -19.97 -151.93 REMARK 500 THR H 116 118.97 -38.93 REMARK 500 SER H 127 96.17 -57.64 REMARK 500 SER H 128 163.38 68.33 REMARK 500 LYS H 129 -89.91 -105.14 REMARK 500 SER H 134 20.08 -79.78 REMARK 500 ASP H 146 63.76 61.09 REMARK 500 THR H 200 -71.65 -137.95 REMARK 500 ARG P 304 -9.72 80.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B0S RELATED DB: PDB REMARK 900 THE SAME FAB COMPLEXED WITH MN PEPTIDE REMARK 900 RELATED ID: 2B1H RELATED DB: PDB REMARK 900 THE SAME FAB COMPLEXES WITH UG29 PEPTIDE DBREF 2B1A P 301 323 GB 313516 CAA80704 31 53 DBREF 2B1A L 1 212 PDB 2B1A 2B1A 1 212 DBREF 2B1A H 1 229 PDB 2B1A 2B1A 1 229 SEQRES 1 L 215 GLN SER VAL LEU THR GLN PRO PRO SER ALA SER GLY THR SEQRES 2 L 215 PRO GLY GLN ARG ILE SER ILE SER CYS SER GLY THR SER SEQRES 3 L 215 SER ASN VAL GLU ASN ASN TYR VAL TYR TRP TYR GLN HIS SEQRES 4 L 215 LEU PRO GLY THR ALA PRO LYS LEU LEU ILE TYR ARG ASN SEQRES 5 L 215 ASP HIS ARG SER SER GLY ILE PRO ASP ARG PHE SER ALA SEQRES 6 L 215 SER LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY SEQRES 7 L 215 LEU ARG PRO GLU ASP GLU GLY ASP TYR TYR CYS ALA ALA SEQRES 8 L 215 TRP ASP ASP SER ARG GLY GLY PRO ASP TRP VAL PHE GLY SEQRES 9 L 215 GLY GLY THR LYS LEU THR VAL LEU ALA GLN PRO LYS ALA SEQRES 10 L 215 ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU SEQRES 11 L 215 LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER SEQRES 12 L 215 ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA SEQRES 13 L 215 ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR SEQRES 14 L 215 PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER SEQRES 15 L 215 TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS LYS SEQRES 16 L 215 SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL SEQRES 17 L 215 GLU LYS THR VAL ALA PRO THR SEQRES 1 H 226 GLU ILE GLN LEU GLU GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 226 SER GLY GLU SER LEU LYS ILE SER CYS GLN THR SER GLY SEQRES 3 H 226 TYR SER PHE SER ASP TYR TRP ILE GLY TRP VAL ARG GLN SEQRES 4 H 226 MET PRO GLY LYS GLY LEU GLU TRP MET GLY ILE PHE TYR SEQRES 5 H 226 PRO GLY ASP SER ASP SER ARG TYR SER PRO SER PHE GLU SEQRES 6 H 226 GLY GLN VAL THR MET SER ALA ASP ARG SER THR ASN THR SEQRES 7 H 226 ALA HIS LEU GLN TRP SER SER LEU LYS PRO SER ASP THR SEQRES 8 H 226 ALA LEU TYR TYR CYS ALA ARG LEU GLY GLY ASP TYR GLU SEQRES 9 H 226 ASP SER GLY ALA ASP ALA PHE ASP PHE TRP GLY GLN GLY SEQRES 10 H 226 THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 11 H 226 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 H 226 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 H 226 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 H 226 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 H 226 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 H 226 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 H 226 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 18 H 226 VAL GLU PRO LYS SER SEQRES 1 P 23 ASN ASN THR ARG LYS SER ILE HIS LEU GLY PRO GLY ARG SEQRES 2 P 23 ALA PHE TYR ALA THR GLY ASP ILE ILE GLY FORMUL 4 HOH *60(H2 O) HELIX 1 1 ARG L 79 GLU L 83 5 5 HELIX 2 2 SER L 121 ALA L 127 1 7 HELIX 3 3 THR L 182 HIS L 189 1 8 HELIX 4 4 SER H 28 TYR H 32 5 5 HELIX 5 5 LYS H 83 THR H 87 5 5 HELIX 6 6 SER H 163 ALA H 165 5 3 HELIX 7 7 SER H 196 LEU H 198 5 3 SHEET 1 A 6 SER L 9 GLY L 13 0 SHEET 2 A 6 THR L 102 VAL L 106 1 O THR L 105 N ALA L 11 SHEET 3 A 6 GLY L 84 ASP L 92 -1 N GLY L 84 O LEU L 104 SHEET 4 A 6 VAL L 33 HIS L 38 -1 N TYR L 34 O ALA L 89 SHEET 5 A 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 A 6 HIS L 53 ARG L 54 -1 O HIS L 53 N TYR L 49 SHEET 1 B 4 SER L 9 GLY L 13 0 SHEET 2 B 4 THR L 102 VAL L 106 1 O THR L 105 N ALA L 11 SHEET 3 B 4 GLY L 84 ASP L 92 -1 N GLY L 84 O LEU L 104 SHEET 4 B 4 ASP L 95D PHE L 98 -1 O ASP L 95D N ASP L 92 SHEET 1 C 3 ILE L 19 SER L 24 0 SHEET 2 C 3 SER L 70 ILE L 75 -1 O ALA L 71 N CYS L 23 SHEET 3 C 3 PHE L 62 SER L 67 -1 N SER L 63 O ALA L 74 SHEET 1 D 4 SER L 114 PHE L 118 0 SHEET 2 D 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 D 4 TYR L 173 LEU L 181 -1 O ALA L 175 N ILE L 136 SHEET 4 D 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 178 SHEET 1 E 4 SER L 114 PHE L 118 0 SHEET 2 E 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 E 4 TYR L 173 LEU L 181 -1 O ALA L 175 N ILE L 136 SHEET 4 E 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 174 SHEET 1 F 4 SER L 153 PRO L 154 0 SHEET 2 F 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 F 4 TYR L 192 HIS L 198 -1 O GLN L 195 N ALA L 147 SHEET 4 F 4 SER L 203 VAL L 209 -1 O VAL L 205 N VAL L 196 SHEET 1 G 4 GLN H 3 GLN H 6 0 SHEET 2 G 4 LEU H 18 SER H 25 -1 O GLN H 23 N GLU H 5 SHEET 3 G 4 THR H 77 TRP H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 G 4 THR H 68 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 H 6 GLU H 10 LYS H 13 0 SHEET 2 H 6 THR H 107 SER H 112 1 O THR H 110 N LYS H 12 SHEET 3 H 6 ALA H 88 GLY H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 H 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 H 6 LEU H 45 PHE H 51 -1 O PHE H 51 N ILE H 34 SHEET 6 H 6 SER H 57 TYR H 59 -1 O ARG H 58 N ILE H 50 SHEET 1 I 4 GLU H 10 LYS H 13 0 SHEET 2 I 4 THR H 107 SER H 112 1 O THR H 110 N LYS H 12 SHEET 3 I 4 ALA H 88 GLY H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 I 4 ALA H 100F TRP H 103 -1 O ALA H 100F N GLY H 96 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 THR H 137 TYR H 147 -1 O LYS H 145 N SER H 120 SHEET 3 J 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 147 SHEET 4 J 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 190 SHEET 1 K 4 SER H 120 LEU H 124 0 SHEET 2 K 4 THR H 137 TYR H 147 -1 O LYS H 145 N SER H 120 SHEET 3 K 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 147 SHEET 4 K 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 186 SHEET 1 L 3 THR H 153 TRP H 157 0 SHEET 2 L 3 ILE H 207 HIS H 212 -1 O ASN H 209 N SER H 156 SHEET 3 L 3 THR H 217 LYS H 222 -1 O THR H 217 N HIS H 212 SHEET 1 M 2 ILE P 307 GLY P 312 0 SHEET 2 M 2 ARG P 315 PHE P 317 -1 O PHE P 317 N ILE P 307 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.17 SSBOND 4 CYS H 142 CYS H 208 1555 1555 2.02 CISPEP 1 TYR L 140 PRO L 141 0 -4.61 CISPEP 2 PHE H 148 PRO H 149 0 -8.69 CISPEP 3 GLU H 150 PRO H 151 0 -3.67 CRYST1 62.716 96.890 97.018 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015945 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010307 0.00000