HEADER IMMUNE SYSTEM 15-SEP-05 2B1H TITLE CRYSTAL STRUCTURE ANALYSIS OF ANTI-HIV-1 V3 FAB 2219 IN COMPLEX WITH TITLE 2 UG29 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB 2219, LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: LIGHT CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB 2219, HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 FRAGMENT: HEAVY CHAIN; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: UG29 PEPTIDE OF EXTERIOR MEMBRANE GLYCOPROTEIN GP120; COMPND 11 CHAIN: P; COMPND 12 FRAGMENT: RESIDUES 96-118; COMPND 13 SYNONYM: GP120; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BLOOD; SOURCE 6 CELL: PERIPHERAL BLOOD CELLS; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 ORGAN: BLOOD; SOURCE 12 CELL: PERIPHERAL BLOOD CELLS; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: THIS SEQUENCE OCCURS IN HUMAN IMMUNODEFICIENCY VIRUS SOURCE 16 TYPE 1 (ISOLATE MN) KEYWDS FAB-PEPTIDE COMPLEX; HIV-1; GP120; V3 LOOP, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.L.STANFIELD,M.K.GORNY,S.ZOLLA-PAZNER,I.A.WILSON REVDAT 5 23-AUG-23 2B1H 1 REMARK REVDAT 4 24-JUL-19 2B1H 1 REMARK REVDAT 3 13-JUL-11 2B1H 1 VERSN REVDAT 2 24-FEB-09 2B1H 1 VERSN REVDAT 1 04-JUL-06 2B1H 0 JRNL AUTH R.L.STANFIELD,M.K.GORNY,S.ZOLLA-PAZNER,I.A.WILSON JRNL TITL CRYSTAL STRUCTURES OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 JRNL TITL 2 (HIV-1) NEUTRALIZING ANTIBODY 2219 IN COMPLEX WITH THREE JRNL TITL 3 DIFFERENT V3 PEPTIDES REVEAL A NEW BINDING MODE FOR HIV-1 JRNL TITL 4 CROSS-REACTIVITY. JRNL REF J.VIROL. V. 80 6093 2006 JRNL REFN ISSN 0022-538X JRNL PMID 16731948 JRNL DOI 10.1128/JVI.00205-06 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1982 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2775 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3449 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 33.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.19000 REMARK 3 B22 (A**2) : 2.50000 REMARK 3 B33 (A**2) : -1.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.471 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3543 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2380 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4827 ; 1.728 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5822 ; 0.967 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 7.348 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;32.917 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 548 ;15.336 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;12.231 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3949 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 688 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 502 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2354 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1678 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1824 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 151 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 23 ; 0.233 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.099 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2875 ; 1.215 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 918 ; 0.270 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3670 ; 1.495 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1537 ; 2.380 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1157 ; 3.235 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 107 REMARK 3 ORIGIN FOR THE GROUP (A): 57.3896 46.3727 78.5174 REMARK 3 T TENSOR REMARK 3 T11: -0.0704 T22: -0.0520 REMARK 3 T33: -0.0071 T12: -0.0359 REMARK 3 T13: -0.0188 T23: 0.1572 REMARK 3 L TENSOR REMARK 3 L11: 1.8390 L22: 3.1306 REMARK 3 L33: 6.9399 L12: 0.8994 REMARK 3 L13: 0.2182 L23: 0.6901 REMARK 3 S TENSOR REMARK 3 S11: -0.1223 S12: 0.6768 S13: 0.6461 REMARK 3 S21: -0.3015 S22: 0.3361 S23: 0.1283 REMARK 3 S31: -0.7011 S32: -0.1956 S33: -0.2138 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 108 L 212 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0907 28.1821 61.1943 REMARK 3 T TENSOR REMARK 3 T11: 0.0049 T22: -0.1394 REMARK 3 T33: 0.0526 T12: 0.0078 REMARK 3 T13: -0.1387 T23: 0.0712 REMARK 3 L TENSOR REMARK 3 L11: 6.7455 L22: 6.2328 REMARK 3 L33: 4.5921 L12: 4.6591 REMARK 3 L13: -1.3587 L23: -1.6404 REMARK 3 S TENSOR REMARK 3 S11: -0.1174 S12: 0.5675 S13: 0.6975 REMARK 3 S21: -0.3470 S22: 0.2837 S23: 0.9429 REMARK 3 S31: 0.0852 S32: -0.3176 S33: -0.1662 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 113 REMARK 3 RESIDUE RANGE : P 303 P 320 REMARK 3 ORIGIN FOR THE GROUP (A): 55.8019 33.5300 94.0439 REMARK 3 T TENSOR REMARK 3 T11: -0.2411 T22: -0.2070 REMARK 3 T33: -0.1830 T12: 0.0341 REMARK 3 T13: 0.0102 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 3.4381 L22: 2.5116 REMARK 3 L33: 1.6626 L12: 1.5942 REMARK 3 L13: 0.3559 L23: 0.2564 REMARK 3 S TENSOR REMARK 3 S11: -0.0658 S12: -0.0180 S13: 0.3638 REMARK 3 S21: 0.0497 S22: 0.0312 S23: 0.0670 REMARK 3 S31: -0.2094 S32: -0.0325 S33: 0.0347 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 114 H 229 REMARK 3 ORIGIN FOR THE GROUP (A): 37.7534 12.2893 60.2558 REMARK 3 T TENSOR REMARK 3 T11: 0.3188 T22: -0.0676 REMARK 3 T33: -0.0487 T12: -0.0672 REMARK 3 T13: -0.0470 T23: -0.1427 REMARK 3 L TENSOR REMARK 3 L11: 5.9761 L22: 2.7830 REMARK 3 L33: 14.9028 L12: 1.3945 REMARK 3 L13: -0.6579 L23: 1.0753 REMARK 3 S TENSOR REMARK 3 S11: -0.3554 S12: 1.1684 S13: -0.4696 REMARK 3 S21: -0.8284 S22: 0.1739 S23: 0.1468 REMARK 3 S31: 1.2865 S32: -0.4126 S33: 0.1815 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2B1H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39609 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 67.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.61200 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2B0S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% MPEG 5000, 0.2M DISODIUM TARTRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.44950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.30850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.25050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.30850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.44950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.25050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN P 301 REMARK 465 ASN P 302 REMARK 465 ASN P 321 REMARK 465 GLY P 322 REMARK 465 ILE P 323 REMARK 465 ILE P 324 REMARK 465 GLY P 325 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS H 142 CB CYS H 142 SG -0.098 REMARK 500 ASN H 162 CG ASN H 162 ND2 0.176 REMARK 500 VAL H 210 C VAL H 210 O 0.129 REMARK 500 ASP H 220 CG ASP H 220 OD1 0.181 REMARK 500 ILE P 309 C ARG P 312 N 0.182 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 2 50.20 -91.02 REMARK 500 ASN L 27B -89.49 -134.20 REMARK 500 ASN L 51 -61.15 81.04 REMARK 500 ASP L 151 -117.11 50.52 REMARK 500 ASP H 54 13.29 -142.56 REMARK 500 ASP H 100E -5.20 -156.62 REMARK 500 SER H 128 160.84 69.38 REMARK 500 LYS H 129 31.45 -151.02 REMARK 500 SER H 130 50.08 -177.86 REMARK 500 ASP H 146 64.40 61.35 REMARK 500 THR H 200 -57.29 -133.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE P 309 17.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B0S RELATED DB: PDB REMARK 900 THE SAME FAB COMPLEXED WITH MN PEPTIDE REMARK 900 RELATED ID: 2B1A RELATED DB: PDB REMARK 900 THE SAME FAB COMPLEXES WITH UG1033 PEPTIDE DBREF 2B1H P 301 323 GB 50982993 AAT92018 96 118 DBREF 2B1H L 1 212 PDB 2B1H 2B1H 1 212 DBREF 2B1H H 1 229 PDB 2B1H 2B1H 1 229 SEQRES 1 L 215 GLN SER VAL LEU THR GLN PRO PRO SER ALA SER GLY THR SEQRES 2 L 215 PRO GLY GLN ARG ILE SER ILE SER CYS SER GLY THR SER SEQRES 3 L 215 SER ASN VAL GLU ASN ASN TYR VAL TYR TRP TYR GLN HIS SEQRES 4 L 215 LEU PRO GLY THR ALA PRO LYS LEU LEU ILE TYR ARG ASN SEQRES 5 L 215 ASP HIS ARG SER SER GLY ILE PRO ASP ARG PHE SER ALA SEQRES 6 L 215 SER LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY SEQRES 7 L 215 LEU ARG PRO GLU ASP GLU GLY ASP TYR TYR CYS ALA ALA SEQRES 8 L 215 TRP ASP ASP SER ARG GLY GLY PRO ASP TRP VAL PHE GLY SEQRES 9 L 215 GLY GLY THR LYS LEU THR VAL LEU ALA GLN PRO LYS ALA SEQRES 10 L 215 ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU SEQRES 11 L 215 LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER SEQRES 12 L 215 ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA SEQRES 13 L 215 ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR SEQRES 14 L 215 PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER SEQRES 15 L 215 TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS LYS SEQRES 16 L 215 SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL SEQRES 17 L 215 GLU LYS THR VAL ALA PRO THR SEQRES 1 H 226 GLU ILE GLN LEU GLU GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 226 SER GLY GLU SER LEU LYS ILE SER CYS GLN THR SER GLY SEQRES 3 H 226 TYR SER PHE SER ASP TYR TRP ILE GLY TRP VAL ARG GLN SEQRES 4 H 226 MET PRO GLY LYS GLY LEU GLU TRP MET GLY ILE PHE TYR SEQRES 5 H 226 PRO GLY ASP SER ASP SER ARG TYR SER PRO SER PHE GLU SEQRES 6 H 226 GLY GLN VAL THR MET SER ALA ASP ARG SER THR ASN THR SEQRES 7 H 226 ALA HIS LEU GLN TRP SER SER LEU LYS PRO SER ASP THR SEQRES 8 H 226 ALA LEU TYR TYR CYS ALA ARG LEU GLY GLY ASP TYR GLU SEQRES 9 H 226 ASP SER GLY ALA ASP ALA PHE ASP PHE TRP GLY GLN GLY SEQRES 10 H 226 THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 11 H 226 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 H 226 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 H 226 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 H 226 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 H 226 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 H 226 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 H 226 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 18 H 226 VAL GLU PRO LYS SER SEQRES 1 P 23 ASN ASN THR LYS LYS SER ILE LYS ILE ARG PRO ARG GLN SEQRES 2 P 23 ALA PHE TYR ALA THR ASN GLY ILE ILE GLY FORMUL 4 HOH *123(H2 O) HELIX 1 1 ARG L 79 GLU L 83 5 5 HELIX 2 2 SER L 121 ALA L 127 1 7 HELIX 3 3 THR L 182 SER L 188 1 7 HELIX 4 4 SER H 28 TYR H 32 5 5 HELIX 5 5 LYS H 83 THR H 87 5 5 HELIX 6 6 SER H 163 ALA H 165 5 3 HELIX 7 7 SER H 196 THR H 200 5 5 SHEET 1 A 6 SER L 9 GLY L 13 0 SHEET 2 A 6 THR L 102 VAL L 106 1 O LYS L 103 N ALA L 11 SHEET 3 A 6 GLY L 84 ASP L 92 -1 N GLY L 84 O LEU L 104 SHEET 4 A 6 VAL L 33 HIS L 38 -1 N HIS L 38 O ASP L 85 SHEET 5 A 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 A 6 HIS L 53 ARG L 54 -1 O HIS L 53 N TYR L 49 SHEET 1 B 4 SER L 9 GLY L 13 0 SHEET 2 B 4 THR L 102 VAL L 106 1 O LYS L 103 N ALA L 11 SHEET 3 B 4 GLY L 84 ASP L 92 -1 N GLY L 84 O LEU L 104 SHEET 4 B 4 ASP L 95D PHE L 98 -1 O ASP L 95D N ASP L 92 SHEET 1 C 3 ILE L 19 SER L 24 0 SHEET 2 C 3 SER L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 3 C 3 PHE L 62 SER L 67 -1 N SER L 67 O SER L 70 SHEET 1 D 4 SER L 114 PHE L 118 0 SHEET 2 D 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 D 4 TYR L 173 LEU L 181 -1 O LEU L 179 N LEU L 132 SHEET 4 D 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 178 SHEET 1 E 4 SER L 114 PHE L 118 0 SHEET 2 E 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 E 4 TYR L 173 LEU L 181 -1 O LEU L 179 N LEU L 132 SHEET 4 E 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 174 SHEET 1 F 4 SER L 153 VAL L 155 0 SHEET 2 F 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 F 4 TYR L 192 HIS L 198 -1 O GLN L 195 N ALA L 147 SHEET 4 F 4 SER L 203 VAL L 209 -1 O VAL L 205 N VAL L 196 SHEET 1 G 4 GLN H 3 GLN H 6 0 SHEET 2 G 4 LEU H 18 SER H 25 -1 O GLN H 23 N GLU H 5 SHEET 3 G 4 THR H 77 TRP H 82 -1 O LEU H 80 N ILE H 20 SHEET 4 G 4 THR H 68 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 H 6 GLU H 10 LYS H 13 0 SHEET 2 H 6 THR H 107 SER H 112 1 O THR H 110 N LYS H 12 SHEET 3 H 6 ALA H 88 GLY H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 H 6 ILE H 34 GLN H 39 -1 N GLY H 35 O ALA H 93 SHEET 5 H 6 LEU H 45 PHE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 H 6 SER H 57 TYR H 59 -1 O ARG H 58 N ILE H 50 SHEET 1 I 4 GLU H 10 LYS H 13 0 SHEET 2 I 4 THR H 107 SER H 112 1 O THR H 110 N LYS H 12 SHEET 3 I 4 ALA H 88 GLY H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 I 4 ALA H 100F TRP H 103 -1 O ALA H 100F N GLY H 96 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 THR H 137 TYR H 147 -1 O LYS H 145 N SER H 120 SHEET 3 J 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 J 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 190 SHEET 1 K 4 SER H 120 LEU H 124 0 SHEET 2 K 4 THR H 137 TYR H 147 -1 O LYS H 145 N SER H 120 SHEET 3 K 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 K 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 186 SHEET 1 L 3 THR H 153 TRP H 157 0 SHEET 2 L 3 ILE H 207 HIS H 212 -1 O ASN H 209 N SER H 156 SHEET 3 L 3 THR H 217 LYS H 222 -1 O THR H 217 N HIS H 212 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.05 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.13 SSBOND 4 CYS H 142 CYS H 208 1555 1555 2.06 CISPEP 1 TYR L 140 PRO L 141 0 -2.55 CISPEP 2 PHE H 148 PRO H 149 0 -10.21 CISPEP 3 GLU H 150 PRO H 151 0 -6.27 CRYST1 62.899 94.501 96.617 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015899 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010582 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010350 0.00000