data_2B1M # _entry.id 2B1M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2B1M RCSB RCSB034562 WWPDB D_1000034562 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2B1N _pdbx_database_related.details 'the same protein with a different ligand' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2B1M _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2005-09-16 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, M.' 1 'Wei, Z.' 2 'Chang, S.' 3 # _citation.id primary _citation.title 'Crystal structure of a papain-fold protein without the catalytic residue: a novel member in the cysteine proteinase family' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 358 _citation.page_first 97 _citation.page_last 105 _citation.year 2006 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16497323 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2006.01.065 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, M.' 1 ? primary 'Wei, Z.' 2 ? primary 'Chang, S.' 3 ? primary 'Teng, M.' 4 ? primary 'Gong, W.' 5 ? # _cell.length_a 61.518 _cell.length_b 61.518 _cell.length_c 142.191 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 2B1M _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 2B1M _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 92 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat SPE31 27123.848 1 ? ? ? ? 2 branched man 'alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose' 570.542 1 ? ? ? ? 3 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 5 water nat water 18.015 271 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDESEGCYNGWHYQSFEWVVKHG GIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDGGNC SSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIEKSETLKFGRVKADPR VEHSPL ; _entity_poly.pdbx_seq_one_letter_code_can ;DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDESEGCYNGWHYQSFEWVVKHG GIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDGGNC SSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIEKSETLKFGRVKADPR VEHSPL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ALA n 1 3 PRO n 1 4 GLU n 1 5 SER n 1 6 TRP n 1 7 ASP n 1 8 TRP n 1 9 SER n 1 10 LYS n 1 11 LYS n 1 12 GLY n 1 13 VAL n 1 14 ILE n 1 15 THR n 1 16 LYS n 1 17 VAL n 1 18 LYS n 1 19 PHE n 1 20 GLN n 1 21 GLY n 1 22 GLN n 1 23 CYS n 1 24 GLY n 1 25 SER n 1 26 GLY n 1 27 TRP n 1 28 ALA n 1 29 PHE n 1 30 SER n 1 31 ALA n 1 32 THR n 1 33 GLY n 1 34 ALA n 1 35 ILE n 1 36 GLU n 1 37 ALA n 1 38 ALA n 1 39 HIS n 1 40 ALA n 1 41 ILE n 1 42 ALA n 1 43 THR n 1 44 GLY n 1 45 ASN n 1 46 LEU n 1 47 VAL n 1 48 SER n 1 49 LEU n 1 50 SER n 1 51 GLU n 1 52 GLN n 1 53 GLU n 1 54 LEU n 1 55 ILE n 1 56 ASP n 1 57 CYS n 1 58 VAL n 1 59 ASP n 1 60 GLU n 1 61 SER n 1 62 GLU n 1 63 GLY n 1 64 CYS n 1 65 TYR n 1 66 ASN n 1 67 GLY n 1 68 TRP n 1 69 HIS n 1 70 TYR n 1 71 GLN n 1 72 SER n 1 73 PHE n 1 74 GLU n 1 75 TRP n 1 76 VAL n 1 77 VAL n 1 78 LYS n 1 79 HIS n 1 80 GLY n 1 81 GLY n 1 82 ILE n 1 83 ALA n 1 84 SER n 1 85 GLU n 1 86 ALA n 1 87 ASP n 1 88 TYR n 1 89 PRO n 1 90 TYR n 1 91 LYS n 1 92 ALA n 1 93 ARG n 1 94 ASP n 1 95 GLY n 1 96 LYS n 1 97 CYS n 1 98 LYS n 1 99 ALA n 1 100 ASN n 1 101 GLU n 1 102 ILE n 1 103 GLN n 1 104 ASP n 1 105 LYS n 1 106 VAL n 1 107 THR n 1 108 ILE n 1 109 ASP n 1 110 ASN n 1 111 TYR n 1 112 GLY n 1 113 VAL n 1 114 GLN n 1 115 ILE n 1 116 LEU n 1 117 SER n 1 118 ASN n 1 119 GLU n 1 120 SER n 1 121 THR n 1 122 GLU n 1 123 SER n 1 124 GLU n 1 125 ALA n 1 126 GLU n 1 127 SER n 1 128 SER n 1 129 LEU n 1 130 GLN n 1 131 SER n 1 132 PHE n 1 133 VAL n 1 134 LEU n 1 135 GLU n 1 136 GLN n 1 137 PRO n 1 138 ILE n 1 139 SER n 1 140 VAL n 1 141 SER n 1 142 ILE n 1 143 ASP n 1 144 ALA n 1 145 LYS n 1 146 ASP n 1 147 PHE n 1 148 HIS n 1 149 PHE n 1 150 TYR n 1 151 SER n 1 152 GLY n 1 153 GLY n 1 154 ILE n 1 155 TYR n 1 156 ASP n 1 157 GLY n 1 158 GLY n 1 159 ASN n 1 160 CYS n 1 161 SER n 1 162 SER n 1 163 PRO n 1 164 TYR n 1 165 GLY n 1 166 ILE n 1 167 ASN n 1 168 HIS n 1 169 PHE n 1 170 VAL n 1 171 LEU n 1 172 ILE n 1 173 VAL n 1 174 GLY n 1 175 TYR n 1 176 GLY n 1 177 SER n 1 178 GLU n 1 179 ASP n 1 180 GLY n 1 181 VAL n 1 182 ASP n 1 183 TYR n 1 184 TRP n 1 185 ILE n 1 186 ALA n 1 187 LYS n 1 188 ASN n 1 189 SER n 1 190 TRP n 1 191 GLY n 1 192 GLU n 1 193 ASP n 1 194 TRP n 1 195 GLY n 1 196 ILE n 1 197 ASP n 1 198 GLY n 1 199 TYR n 1 200 ILE n 1 201 ARG n 1 202 ILE n 1 203 GLN n 1 204 ARG n 1 205 ASN n 1 206 THR n 1 207 GLY n 1 208 ASN n 1 209 LEU n 1 210 LEU n 1 211 GLY n 1 212 VAL n 1 213 CYS n 1 214 GLY n 1 215 MET n 1 216 ASN n 1 217 TYR n 1 218 PHE n 1 219 ALA n 1 220 SER n 1 221 TYR n 1 222 PRO n 1 223 ILE n 1 224 ILE n 1 225 GLU n 1 226 LYS n 1 227 SER n 1 228 GLU n 1 229 THR n 1 230 LEU n 1 231 LYS n 1 232 PHE n 1 233 GLY n 1 234 ARG n 1 235 VAL n 1 236 LYS n 1 237 ALA n 1 238 ASP n 1 239 PRO n 1 240 ARG n 1 241 VAL n 1 242 GLU n 1 243 HIS n 1 244 SER n 1 245 PRO n 1 246 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Pachyrhizus erosus' _entity_src_nat.pdbx_ncbi_taxonomy_id 109171 _entity_src_nat.genus Pachyrhizus _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AAZ78496 _struct_ref.pdbx_db_accession 73623011 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2B1M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 246 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 73623011 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 246 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 246 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose ? 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2B1M _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '30% PEG 4000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-06-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2B1M _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 2.00 _reflns.number_obs 19291 _reflns.percent_possible_obs 99.900 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_chi_squared 1.026 _reflns.pdbx_redundancy 12.400 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.number_measured_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.percent_possible_all _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.05 2.00 1254 99.900 0.386 1.002 12.100 ? ? ? ? ? ? 1 1 2.10 2.05 1233 100.000 0.327 1.116 12.100 ? ? ? ? ? ? 2 1 2.15 2.10 1261 100.000 0.276 1.044 12.300 ? ? ? ? ? ? 3 1 2.22 2.15 1269 100.000 0.228 1.015 12.200 ? ? ? ? ? ? 4 1 2.29 2.22 1270 100.000 0.209 1.176 12.100 ? ? ? ? ? ? 5 1 2.37 2.29 1252 100.000 0.171 1.079 12.300 ? ? ? ? ? ? 6 1 2.47 2.37 1268 100.000 0.153 1.089 12.300 ? ? ? ? ? ? 7 1 2.58 2.47 1255 100.000 0.124 1.070 12.400 ? ? ? ? ? ? 8 1 2.71 2.58 1284 100.000 0.113 1.095 12.400 ? ? ? ? ? ? 9 1 2.88 2.71 1268 100.000 0.088 1.020 12.500 ? ? ? ? ? ? 10 1 3.11 2.88 1293 100.000 0.068 1.037 12.400 ? ? ? ? ? ? 11 1 3.42 3.11 1305 100.000 0.055 0.978 12.700 ? ? ? ? ? ? 12 1 3.91 3.42 1301 100.000 0.046 0.938 13.000 ? ? ? ? ? ? 13 1 4.93 3.91 1338 100.000 0.038 0.869 13.400 ? ? ? ? ? ? 14 1 30.00 4.93 1440 99.000 0.034 0.921 12.400 ? ? ? ? ? ? 15 1 # _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 22.120 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF 1598145.625 _refine.pdbx_data_cutoff_low_absF 0.000 _refine.ls_percent_reflns_obs 99.900 _refine.ls_number_reflns_obs 19206 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_R_work 0.18 _refine.ls_R_factor_R_free 0.209 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 977 _refine.ls_R_factor_R_free_error 0.007 _refine.B_iso_mean 24.900 _refine.solvent_model_param_bsol 48.557 _refine.solvent_model_param_ksol 0.354 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] -2.290 _refine.aniso_B[2][2] -2.290 _refine.aniso_B[3][3] 4.580 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT MODEL' _refine.entry_id 2B1M _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.occupancy_max ? _refine.occupancy_min ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.Luzzati_coordinate_error_obs 0.200 _refine_analyze.Luzzati_sigma_a_obs 0.120 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.250 _refine_analyze.Luzzati_sigma_a_free 0.170 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2B1M _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1734 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 271 _refine_hist.number_atoms_total 2063 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 22.120 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.005 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 1.100 ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? 23.000 ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? 0.620 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.130 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 2958 _refine_ls_shell.R_factor_R_work 0.195 _refine_ls_shell.R_factor_R_free 0.244 _refine_ls_shell.percent_reflns_R_free 5.500 _refine_ls_shell.number_reflns_R_free 171 _refine_ls_shell.R_factor_R_free_error 0.019 _refine_ls_shell.number_reflns_all 3129 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2B1M _struct.title 'Crystal structure of a papain-fold protein without the catalytic cysteine from seeds of Pachyrhizus erosus' _struct.pdbx_descriptor SPE31 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2B1M _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'papain-like, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 9 ? LYS A 11 ? SER A 9 LYS A 11 5 ? 3 HELX_P HELX_P2 2 SER A 25 ? GLY A 44 ? SER A 25 GLY A 44 1 ? 20 HELX_P HELX_P3 3 SER A 50 ? VAL A 58 ? SER A 50 VAL A 58 1 ? 9 HELX_P HELX_P4 4 TRP A 68 ? HIS A 79 ? TRP A 68 HIS A 79 1 ? 12 HELX_P HELX_P5 5 LYS A 98 ? ILE A 102 ? LYS A 98 ILE A 102 5 ? 5 HELX_P HELX_P6 6 THR A 121 ? GLN A 136 ? THR A 121 GLN A 136 1 ? 16 HELX_P HELX_P7 7 ASP A 146 ? TYR A 150 ? ASP A 146 TYR A 150 5 ? 5 HELX_P HELX_P8 8 GLY A 211 ? MET A 215 ? GLY A 211 MET A 215 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 64 SG ? ? A CYS 23 A CYS 64 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf2 disulf ? ? A CYS 57 SG ? ? ? 1_555 A CYS 97 SG ? ? A CYS 57 A CYS 97 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf3 disulf ? ? A CYS 160 SG ? ? ? 1_555 A CYS 213 SG ? ? A CYS 160 A CYS 213 1_555 ? ? ? ? ? ? ? 2.026 ? ? covale1 covale one ? A ASN 159 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 159 B NAG 1 1_555 ? ? ? ? ? ? ? 1.448 ? N-Glycosylation covale2 covale both ? B NAG . O3 ? ? ? 1_555 B FUC . C1 ? ? B NAG 1 B FUC 2 1_555 ? ? ? ? ? ? ? 1.402 ? ? covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 3 1_555 ? ? ? ? ? ? ? 1.388 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 162 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 162 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 163 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 163 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.04 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 6 ? ASP A 7 ? TRP A 6 ASP A 7 A 2 HIS A 168 ? GLU A 178 ? HIS A 168 GLU A 178 A 3 ILE A 138 ? ILE A 142 ? ILE A 138 ILE A 142 A 4 PHE A 218 ? ILE A 223 ? PHE A 218 ILE A 223 A 5 ASN A 110 ? ILE A 115 ? ASN A 110 ILE A 115 B 1 TRP A 6 ? ASP A 7 ? TRP A 6 ASP A 7 B 2 HIS A 168 ? GLU A 178 ? HIS A 168 GLU A 178 B 3 VAL A 181 ? LYS A 187 ? VAL A 181 LYS A 187 B 4 TYR A 199 ? GLN A 203 ? TYR A 199 GLN A 203 B 5 ILE A 154 ? TYR A 155 ? ILE A 154 TYR A 155 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP A 6 ? N TRP A 6 O TYR A 175 ? O TYR A 175 A 2 3 O ILE A 172 ? O ILE A 172 N ILE A 138 ? N ILE A 138 A 3 4 N SER A 139 ? N SER A 139 O SER A 220 ? O SER A 220 A 4 5 O ILE A 223 ? O ILE A 223 N ASN A 110 ? N ASN A 110 B 1 2 N TRP A 6 ? N TRP A 6 O TYR A 175 ? O TYR A 175 B 2 3 N LEU A 171 ? N LEU A 171 O LYS A 187 ? O LYS A 187 B 3 4 N TRP A 184 ? N TRP A 184 O ILE A 202 ? O ILE A 202 B 4 5 O ARG A 201 ? O ARG A 201 N TYR A 155 ? N TYR A 155 # _database_PDB_matrix.entry_id 2B1M _database_PDB_matrix.origx[1][1] 1.00000 _database_PDB_matrix.origx[1][2] 0.00000 _database_PDB_matrix.origx[1][3] 0.00000 _database_PDB_matrix.origx[2][1] 0.00000 _database_PDB_matrix.origx[2][2] 1.00000 _database_PDB_matrix.origx[2][3] 0.00000 _database_PDB_matrix.origx[3][1] 0.00000 _database_PDB_matrix.origx[3][2] 0.00000 _database_PDB_matrix.origx[3][3] 1.00000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2B1M _atom_sites.fract_transf_matrix[1][1] 0.01626 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01626 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00703 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 ? ? ? A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 TRP 27 27 27 TRP TRP A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 HIS 39 39 39 HIS HIS A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 CYS 57 57 57 CYS CYS A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 TRP 68 68 68 TRP TRP A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 TRP 75 75 75 TRP TRP A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 HIS 79 79 79 HIS HIS A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 CYS 97 97 97 CYS CYS A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 GLN 103 103 103 GLN GLN A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 GLN 130 130 130 GLN GLN A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 GLN 136 136 136 GLN GLN A . n A 1 137 PRO 137 137 137 PRO PRO A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 ASP 143 143 143 ASP ASP A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 ASP 146 146 146 ASP ASP A . n A 1 147 PHE 147 147 147 PHE PHE A . n A 1 148 HIS 148 148 148 HIS HIS A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 TYR 150 150 150 TYR TYR A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 TYR 155 155 155 TYR TYR A . n A 1 156 ASP 156 156 156 ASP ASP A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 CYS 160 160 160 CYS CYS A . n A 1 161 SER 161 161 161 SER SER A . n A 1 162 SER 162 162 162 SER SER A . n A 1 163 PRO 163 163 163 PRO PRO A . n A 1 164 TYR 164 164 164 TYR TYR A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 ASN 167 167 167 ASN ASN A . n A 1 168 HIS 168 168 168 HIS HIS A . n A 1 169 PHE 169 169 169 PHE PHE A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 VAL 173 173 173 VAL VAL A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 TYR 175 175 175 TYR TYR A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 SER 177 177 177 SER SER A . n A 1 178 GLU 178 178 178 GLU GLU A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 GLY 180 180 180 GLY GLY A . n A 1 181 VAL 181 181 181 VAL VAL A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 TYR 183 183 183 TYR TYR A . n A 1 184 TRP 184 184 184 TRP TRP A . n A 1 185 ILE 185 185 185 ILE ILE A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 LYS 187 187 187 LYS LYS A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 SER 189 189 189 SER SER A . n A 1 190 TRP 190 190 190 TRP TRP A . n A 1 191 GLY 191 191 191 GLY GLY A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 ASP 193 193 193 ASP ASP A . n A 1 194 TRP 194 194 194 TRP TRP A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 ILE 196 196 196 ILE ILE A . n A 1 197 ASP 197 197 197 ASP ASP A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 TYR 199 199 199 TYR TYR A . n A 1 200 ILE 200 200 200 ILE ILE A . n A 1 201 ARG 201 201 201 ARG ARG A . n A 1 202 ILE 202 202 202 ILE ILE A . n A 1 203 GLN 203 203 203 GLN GLN A . n A 1 204 ARG 204 204 204 ARG ARG A . n A 1 205 ASN 205 205 205 ASN ASN A . n A 1 206 THR 206 206 206 THR THR A . n A 1 207 GLY 207 207 207 GLY GLY A . n A 1 208 ASN 208 208 208 ASN ASN A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 LEU 210 210 210 LEU LEU A . n A 1 211 GLY 211 211 211 GLY GLY A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 CYS 213 213 213 CYS CYS A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 MET 215 215 215 MET MET A . n A 1 216 ASN 216 216 216 ASN ASN A . n A 1 217 TYR 217 217 217 TYR TYR A . n A 1 218 PHE 218 218 218 PHE PHE A . n A 1 219 ALA 219 219 219 ALA ALA A . n A 1 220 SER 220 220 220 SER SER A . n A 1 221 TYR 221 221 221 TYR TYR A . n A 1 222 PRO 222 222 222 PRO PRO A . n A 1 223 ILE 223 223 223 ILE ILE A . n A 1 224 ILE 224 224 224 ILE ILE A . n A 1 225 GLU 225 225 225 GLU GLU A . n A 1 226 LYS 226 226 226 LYS LYS A . n A 1 227 SER 227 227 ? ? ? A . n A 1 228 GLU 228 228 ? ? ? A . n A 1 229 THR 229 229 ? ? ? A . n A 1 230 LEU 230 230 ? ? ? A . n A 1 231 LYS 231 231 ? ? ? A . n A 1 232 PHE 232 232 ? ? ? A . n A 1 233 GLY 233 233 ? ? ? A . n A 1 234 ARG 234 234 ? ? ? A . n A 1 235 VAL 235 235 ? ? ? A . n A 1 236 LYS 236 236 ? ? ? A . n A 1 237 ALA 237 237 ? ? ? A . n A 1 238 ASP 238 238 ? ? ? A . n A 1 239 PRO 239 239 ? ? ? A . n A 1 240 ARG 240 240 ? ? ? A . n A 1 241 VAL 241 241 ? ? ? A . n A 1 242 GLU 242 242 ? ? ? A . n A 1 243 HIS 243 243 ? ? ? A . n A 1 244 SER 244 244 ? ? ? A . n A 1 245 PRO 245 245 ? ? ? A . n A 1 246 LEU 246 246 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PG4 1 700 700 PG4 PG4 A . D 4 PEG 1 701 701 PEG PEG A . E 5 HOH 1 702 1 HOH HOH A . E 5 HOH 2 703 2 HOH HOH A . E 5 HOH 3 704 3 HOH HOH A . E 5 HOH 4 705 4 HOH HOH A . E 5 HOH 5 706 5 HOH HOH A . E 5 HOH 6 707 6 HOH HOH A . E 5 HOH 7 708 7 HOH HOH A . E 5 HOH 8 709 8 HOH HOH A . E 5 HOH 9 710 9 HOH HOH A . E 5 HOH 10 711 10 HOH HOH A . E 5 HOH 11 712 11 HOH HOH A . E 5 HOH 12 713 12 HOH HOH A . E 5 HOH 13 714 13 HOH HOH A . E 5 HOH 14 715 14 HOH HOH A . E 5 HOH 15 716 15 HOH HOH A . E 5 HOH 16 717 16 HOH HOH A . E 5 HOH 17 718 17 HOH HOH A . E 5 HOH 18 719 18 HOH HOH A . E 5 HOH 19 720 19 HOH HOH A . E 5 HOH 20 721 20 HOH HOH A . E 5 HOH 21 722 21 HOH HOH A . E 5 HOH 22 723 22 HOH HOH A . E 5 HOH 23 724 23 HOH HOH A . E 5 HOH 24 725 24 HOH HOH A . E 5 HOH 25 726 25 HOH HOH A . E 5 HOH 26 727 26 HOH HOH A . E 5 HOH 27 728 27 HOH HOH A . E 5 HOH 28 729 28 HOH HOH A . E 5 HOH 29 730 29 HOH HOH A . E 5 HOH 30 731 30 HOH HOH A . E 5 HOH 31 732 31 HOH HOH A . E 5 HOH 32 733 32 HOH HOH A . E 5 HOH 33 734 33 HOH HOH A . E 5 HOH 34 735 34 HOH HOH A . E 5 HOH 35 736 35 HOH HOH A . E 5 HOH 36 737 36 HOH HOH A . E 5 HOH 37 738 37 HOH HOH A . E 5 HOH 38 739 38 HOH HOH A . E 5 HOH 39 740 39 HOH HOH A . E 5 HOH 40 741 40 HOH HOH A . E 5 HOH 41 742 41 HOH HOH A . E 5 HOH 42 743 42 HOH HOH A . E 5 HOH 43 744 43 HOH HOH A . E 5 HOH 44 745 44 HOH HOH A . E 5 HOH 45 746 45 HOH HOH A . E 5 HOH 46 747 46 HOH HOH A . E 5 HOH 47 748 47 HOH HOH A . E 5 HOH 48 749 48 HOH HOH A . E 5 HOH 49 750 49 HOH HOH A . E 5 HOH 50 751 50 HOH HOH A . E 5 HOH 51 752 51 HOH HOH A . E 5 HOH 52 753 52 HOH HOH A . E 5 HOH 53 754 53 HOH HOH A . E 5 HOH 54 755 54 HOH HOH A . E 5 HOH 55 756 55 HOH HOH A . E 5 HOH 56 757 56 HOH HOH A . E 5 HOH 57 758 57 HOH HOH A . E 5 HOH 58 759 58 HOH HOH A . E 5 HOH 59 760 59 HOH HOH A . E 5 HOH 60 761 60 HOH HOH A . E 5 HOH 61 762 61 HOH HOH A . E 5 HOH 62 763 62 HOH HOH A . E 5 HOH 63 764 63 HOH HOH A . E 5 HOH 64 765 64 HOH HOH A . E 5 HOH 65 766 65 HOH HOH A . E 5 HOH 66 767 66 HOH HOH A . E 5 HOH 67 768 67 HOH HOH A . E 5 HOH 68 769 68 HOH HOH A . E 5 HOH 69 770 69 HOH HOH A . E 5 HOH 70 771 70 HOH HOH A . E 5 HOH 71 772 71 HOH HOH A . E 5 HOH 72 773 72 HOH HOH A . E 5 HOH 73 774 73 HOH HOH A . E 5 HOH 74 775 74 HOH HOH A . E 5 HOH 75 776 75 HOH HOH A . E 5 HOH 76 777 76 HOH HOH A . E 5 HOH 77 778 77 HOH HOH A . E 5 HOH 78 779 78 HOH HOH A . E 5 HOH 79 780 79 HOH HOH A . E 5 HOH 80 781 80 HOH HOH A . E 5 HOH 81 782 81 HOH HOH A . E 5 HOH 82 783 82 HOH HOH A . E 5 HOH 83 784 83 HOH HOH A . E 5 HOH 84 785 84 HOH HOH A . E 5 HOH 85 786 85 HOH HOH A . E 5 HOH 86 787 86 HOH HOH A . E 5 HOH 87 788 87 HOH HOH A . E 5 HOH 88 789 88 HOH HOH A . E 5 HOH 89 790 89 HOH HOH A . E 5 HOH 90 791 90 HOH HOH A . E 5 HOH 91 792 91 HOH HOH A . E 5 HOH 92 793 92 HOH HOH A . E 5 HOH 93 794 93 HOH HOH A . E 5 HOH 94 795 94 HOH HOH A . E 5 HOH 95 796 95 HOH HOH A . E 5 HOH 96 797 96 HOH HOH A . E 5 HOH 97 798 97 HOH HOH A . E 5 HOH 98 799 98 HOH HOH A . E 5 HOH 99 800 99 HOH HOH A . E 5 HOH 100 801 100 HOH HOH A . E 5 HOH 101 802 101 HOH HOH A . E 5 HOH 102 803 102 HOH HOH A . E 5 HOH 103 804 103 HOH HOH A . E 5 HOH 104 805 104 HOH HOH A . E 5 HOH 105 806 105 HOH HOH A . E 5 HOH 106 807 106 HOH HOH A . E 5 HOH 107 808 107 HOH HOH A . E 5 HOH 108 809 108 HOH HOH A . E 5 HOH 109 810 109 HOH HOH A . E 5 HOH 110 811 110 HOH HOH A . E 5 HOH 111 812 111 HOH HOH A . E 5 HOH 112 813 112 HOH HOH A . E 5 HOH 113 814 113 HOH HOH A . E 5 HOH 114 815 114 HOH HOH A . E 5 HOH 115 816 115 HOH HOH A . E 5 HOH 116 817 116 HOH HOH A . E 5 HOH 117 818 117 HOH HOH A . E 5 HOH 118 819 118 HOH HOH A . E 5 HOH 119 820 119 HOH HOH A . E 5 HOH 120 821 120 HOH HOH A . E 5 HOH 121 822 121 HOH HOH A . E 5 HOH 122 823 122 HOH HOH A . E 5 HOH 123 824 123 HOH HOH A . E 5 HOH 124 825 124 HOH HOH A . E 5 HOH 125 826 125 HOH HOH A . E 5 HOH 126 827 126 HOH HOH A . E 5 HOH 127 828 127 HOH HOH A . E 5 HOH 128 829 128 HOH HOH A . E 5 HOH 129 830 129 HOH HOH A . E 5 HOH 130 831 130 HOH HOH A . E 5 HOH 131 832 131 HOH HOH A . E 5 HOH 132 833 132 HOH HOH A . E 5 HOH 133 834 133 HOH HOH A . E 5 HOH 134 835 134 HOH HOH A . E 5 HOH 135 836 135 HOH HOH A . E 5 HOH 136 837 136 HOH HOH A . E 5 HOH 137 838 137 HOH HOH A . E 5 HOH 138 839 138 HOH HOH A . E 5 HOH 139 840 139 HOH HOH A . E 5 HOH 140 841 140 HOH HOH A . E 5 HOH 141 842 141 HOH HOH A . E 5 HOH 142 843 142 HOH HOH A . E 5 HOH 143 844 143 HOH HOH A . E 5 HOH 144 845 144 HOH HOH A . E 5 HOH 145 846 145 HOH HOH A . E 5 HOH 146 847 146 HOH HOH A . E 5 HOH 147 848 147 HOH HOH A . E 5 HOH 148 849 148 HOH HOH A . E 5 HOH 149 850 149 HOH HOH A . E 5 HOH 150 851 150 HOH HOH A . E 5 HOH 151 852 151 HOH HOH A . E 5 HOH 152 853 152 HOH HOH A . E 5 HOH 153 854 153 HOH HOH A . E 5 HOH 154 855 154 HOH HOH A . E 5 HOH 155 856 155 HOH HOH A . E 5 HOH 156 857 156 HOH HOH A . E 5 HOH 157 858 157 HOH HOH A . E 5 HOH 158 859 158 HOH HOH A . E 5 HOH 159 860 159 HOH HOH A . E 5 HOH 160 861 160 HOH HOH A . E 5 HOH 161 862 161 HOH HOH A . E 5 HOH 162 863 162 HOH HOH A . E 5 HOH 163 864 163 HOH HOH A . E 5 HOH 164 865 164 HOH HOH A . E 5 HOH 165 866 165 HOH HOH A . E 5 HOH 166 867 166 HOH HOH A . E 5 HOH 167 868 167 HOH HOH A . E 5 HOH 168 869 168 HOH HOH A . E 5 HOH 169 870 169 HOH HOH A . E 5 HOH 170 871 170 HOH HOH A . E 5 HOH 171 872 171 HOH HOH A . E 5 HOH 172 873 172 HOH HOH A . E 5 HOH 173 874 173 HOH HOH A . E 5 HOH 174 875 174 HOH HOH A . E 5 HOH 175 876 175 HOH HOH A . E 5 HOH 176 877 176 HOH HOH A . E 5 HOH 177 878 177 HOH HOH A . E 5 HOH 178 879 178 HOH HOH A . E 5 HOH 179 880 179 HOH HOH A . E 5 HOH 180 881 180 HOH HOH A . E 5 HOH 181 882 181 HOH HOH A . E 5 HOH 182 883 182 HOH HOH A . E 5 HOH 183 884 183 HOH HOH A . E 5 HOH 184 885 184 HOH HOH A . E 5 HOH 185 886 185 HOH HOH A . E 5 HOH 186 887 186 HOH HOH A . E 5 HOH 187 888 187 HOH HOH A . E 5 HOH 188 889 188 HOH HOH A . E 5 HOH 189 890 189 HOH HOH A . E 5 HOH 190 891 190 HOH HOH A . E 5 HOH 191 892 191 HOH HOH A . E 5 HOH 192 893 192 HOH HOH A . E 5 HOH 193 894 193 HOH HOH A . E 5 HOH 194 895 194 HOH HOH A . E 5 HOH 195 896 195 HOH HOH A . E 5 HOH 196 897 196 HOH HOH A . E 5 HOH 197 898 197 HOH HOH A . E 5 HOH 198 899 198 HOH HOH A . E 5 HOH 199 900 199 HOH HOH A . E 5 HOH 200 901 200 HOH HOH A . E 5 HOH 201 902 201 HOH HOH A . E 5 HOH 202 903 202 HOH HOH A . E 5 HOH 203 904 203 HOH HOH A . E 5 HOH 204 905 204 HOH HOH A . E 5 HOH 205 906 205 HOH HOH A . E 5 HOH 206 907 206 HOH HOH A . E 5 HOH 207 908 207 HOH HOH A . E 5 HOH 208 909 208 HOH HOH A . E 5 HOH 209 910 209 HOH HOH A . E 5 HOH 210 911 210 HOH HOH A . E 5 HOH 211 912 211 HOH HOH A . E 5 HOH 212 913 212 HOH HOH A . E 5 HOH 213 914 213 HOH HOH A . E 5 HOH 214 915 214 HOH HOH A . E 5 HOH 215 916 215 HOH HOH A . E 5 HOH 216 917 216 HOH HOH A . E 5 HOH 217 918 217 HOH HOH A . E 5 HOH 218 919 218 HOH HOH A . E 5 HOH 219 920 219 HOH HOH A . E 5 HOH 220 921 220 HOH HOH A . E 5 HOH 221 922 221 HOH HOH A . E 5 HOH 222 923 222 HOH HOH A . E 5 HOH 223 924 223 HOH HOH A . E 5 HOH 224 925 224 HOH HOH A . E 5 HOH 225 926 225 HOH HOH A . E 5 HOH 226 927 226 HOH HOH A . E 5 HOH 227 928 227 HOH HOH A . E 5 HOH 228 929 228 HOH HOH A . E 5 HOH 229 930 229 HOH HOH A . E 5 HOH 230 931 230 HOH HOH A . E 5 HOH 231 932 231 HOH HOH A . E 5 HOH 232 933 232 HOH HOH A . E 5 HOH 233 934 233 HOH HOH A . E 5 HOH 234 935 234 HOH HOH A . E 5 HOH 235 936 235 HOH HOH A . E 5 HOH 236 937 236 HOH HOH A . E 5 HOH 237 938 237 HOH HOH A . E 5 HOH 238 939 238 HOH HOH A . E 5 HOH 239 940 239 HOH HOH A . E 5 HOH 240 941 240 HOH HOH A . E 5 HOH 241 942 241 HOH HOH A . E 5 HOH 242 943 242 HOH HOH A . E 5 HOH 243 944 243 HOH HOH A . E 5 HOH 244 945 244 HOH HOH A . E 5 HOH 245 946 245 HOH HOH A . E 5 HOH 246 947 246 HOH HOH A . E 5 HOH 247 948 247 HOH HOH A . E 5 HOH 248 949 248 HOH HOH A . E 5 HOH 249 950 249 HOH HOH A . E 5 HOH 250 951 250 HOH HOH A . E 5 HOH 251 952 251 HOH HOH A . E 5 HOH 252 953 252 HOH HOH A . E 5 HOH 253 954 253 HOH HOH A . E 5 HOH 254 955 254 HOH HOH A . E 5 HOH 255 956 255 HOH HOH A . E 5 HOH 256 957 256 HOH HOH A . E 5 HOH 257 958 257 HOH HOH A . E 5 HOH 258 959 258 HOH HOH A . E 5 HOH 259 960 259 HOH HOH A . E 5 HOH 260 961 260 HOH HOH A . E 5 HOH 261 962 261 HOH HOH A . E 5 HOH 262 963 262 HOH HOH A . E 5 HOH 263 964 263 HOH HOH A . E 5 HOH 264 965 264 HOH HOH A . E 5 HOH 265 966 265 HOH HOH A . E 5 HOH 266 967 266 HOH HOH A . E 5 HOH 267 968 267 HOH HOH A . E 5 HOH 268 969 268 HOH HOH A . E 5 HOH 269 970 269 HOH HOH A . E 5 HOH 270 971 270 HOH HOH A . E 5 HOH 271 972 271 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 159 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 159 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-03 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Atomic model' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' atom_site 3 5 'Structure model' chem_comp 4 5 'Structure model' entity 5 5 'Structure model' pdbx_branch_scheme 6 5 'Structure model' pdbx_chem_comp_identifier 7 5 'Structure model' pdbx_entity_branch 8 5 'Structure model' pdbx_entity_branch_descriptor 9 5 'Structure model' pdbx_entity_branch_link 10 5 'Structure model' pdbx_entity_branch_list 11 5 'Structure model' pdbx_entity_nonpoly 12 5 'Structure model' pdbx_nonpoly_scheme 13 5 'Structure model' pdbx_struct_assembly_gen 14 5 'Structure model' struct_asym 15 5 'Structure model' struct_conn 16 5 'Structure model' struct_site 17 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' 10 5 'Structure model' '_atom_site.auth_asym_id' 11 5 'Structure model' '_atom_site.auth_seq_id' 12 5 'Structure model' '_atom_site.label_asym_id' 13 5 'Structure model' '_atom_site.label_entity_id' 14 5 'Structure model' '_chem_comp.name' 15 5 'Structure model' '_chem_comp.type' 16 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 17 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 5 'Structure model' '_struct_conn.pdbx_role' 19 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 27 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 CNS 1.1 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 PDB_EXTRACT 1.700 'May. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 AMoRE . ? ? ? ? phasing ? ? ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 103 ? ? -91.05 -64.54 2 1 ASN A 110 ? ? -166.51 -162.64 3 1 ASN A 118 ? ? -65.94 1.68 4 1 ALA A 144 ? ? -93.86 31.57 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 4 ? CG ? A GLU 4 CG 2 1 Y 1 A GLU 4 ? CD ? A GLU 4 CD 3 1 Y 1 A GLU 4 ? OE1 ? A GLU 4 OE1 4 1 Y 1 A GLU 4 ? OE2 ? A GLU 4 OE2 5 1 Y 1 A GLU 225 ? CG ? A GLU 225 CG 6 1 Y 1 A GLU 225 ? CD ? A GLU 225 CD 7 1 Y 1 A GLU 225 ? OE1 ? A GLU 225 OE1 8 1 Y 1 A GLU 225 ? OE2 ? A GLU 225 OE2 9 1 Y 1 A LYS 226 ? CG ? A LYS 226 CG 10 1 Y 1 A LYS 226 ? CD ? A LYS 226 CD 11 1 Y 1 A LYS 226 ? CE ? A LYS 226 CE 12 1 Y 1 A LYS 226 ? NZ ? A LYS 226 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 1 ? A ASP 1 2 1 Y 1 A SER 227 ? A SER 227 3 1 Y 1 A GLU 228 ? A GLU 228 4 1 Y 1 A THR 229 ? A THR 229 5 1 Y 1 A LEU 230 ? A LEU 230 6 1 Y 1 A LYS 231 ? A LYS 231 7 1 Y 1 A PHE 232 ? A PHE 232 8 1 Y 1 A GLY 233 ? A GLY 233 9 1 Y 1 A ARG 234 ? A ARG 234 10 1 Y 1 A VAL 235 ? A VAL 235 11 1 Y 1 A LYS 236 ? A LYS 236 12 1 Y 1 A ALA 237 ? A ALA 237 13 1 Y 1 A ASP 238 ? A ASP 238 14 1 Y 1 A PRO 239 ? A PRO 239 15 1 Y 1 A ARG 240 ? A ARG 240 16 1 Y 1 A VAL 241 ? A VAL 241 17 1 Y 1 A GLU 242 ? A GLU 242 18 1 Y 1 A HIS 243 ? A HIS 243 19 1 Y 1 A SER 244 ? A SER 244 20 1 Y 1 A PRO 245 ? A PRO 245 21 1 Y 1 A LEU 246 ? A LEU 246 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 ? NAG 600 n B 2 FUC 2 B FUC 2 ? FUC 601 n B 2 NAG 3 B NAG 3 ? NAG 602 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'LFucpa1-3[DGlcpNAcb1-4]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-1/a3-b1_a4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 FUC C1 O1 1 NAG O3 HO3 sing ? 2 2 3 NAG C1 O1 1 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 FUC 2 n 2 NAG 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'TETRAETHYLENE GLYCOL' PG4 4 'DI(HYDROXYETHYL)ETHER' PEG 5 water HOH #