HEADER APOPTOSIS 16-SEP-05 2B1W TITLE SOLUTION STRUCTURE OF THE NOD1 CASPASE ACTIVATING AND RECRUITMENT TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE RECRUITMENT DOMAIN PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARD; COMPND 5 SYNONYM: NOD1 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CARD4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM-11 KEYWDS CARD4, SIX-HELIX BUNDLE, CASPASE RECRUITMENT DOMAIN, INFLAMMATION, KEYWDS 2 NF-KB, GREEK KEY, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR F.MANON,A.FAVIER,J.P.SIMORRE,S.CUSACK REVDAT 5 01-MAY-24 2B1W 1 REMARK REVDAT 4 26-FEB-20 2B1W 1 SEQADV REVDAT 3 05-OCT-11 2B1W 1 VERSN JRNL REMARK REVDAT 2 24-FEB-09 2B1W 1 VERSN REVDAT 1 26-SEP-06 2B1W 0 JRNL AUTH F.MANON,A.FAVIER,G.NUNEZ,J.P.SIMORRE,S.CUSACK JRNL TITL SOLUTION STRUCTURE OF NOD1 CARD AND MUTATIONAL ANALYSIS OF JRNL TITL 2 ITS INTERACTION WITH THE CARD OF DOWNSTREAM KINASE RICK. JRNL REF J.MOL.BIOL. V. 365 160 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17054981 JRNL DOI 10.1016/J.JMB.2006.09.067 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.3, ARIA 2.0 REMARK 3 AUTHORS : F.DELAGLIO, S.GRZESIEK, G.W.VUISTER, G.ZHU, REMARK 3 J.PFEIFER, A.BAX (NMRPIPE), M.HABECK, W.RIEPING, REMARK 3 J.P.LINGE, M.NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B1W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034572. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.4MM NOD1 CARD 15N, 13C; 25MM REMARK 210 PHOSPHATE BUFFER NA; 100MM NACL, REMARK 210 5MM DTT; 95% H2O, 5% D2O; 1.4MM REMARK 210 NOD1 CARD 15N; 25MM PHOSPHATE REMARK 210 BUFFER NA; 100MM NACL, 5MM DTT; REMARK 210 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D METHYL REMARK 210 SELECTED NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, CNS 1.1, ARIA 2.0, REMARK 210 NMRDRAW 2.3 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS, REFINEMENT IN REMARK 210 EXPLICIT WATER REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 PRO A 111 REMARK 465 SER A 112 REMARK 465 LEU A 113 REMARK 465 LEU A 114 REMARK 465 THR A 115 REMARK 465 GLN A 116 REMARK 465 SER A 117 REMARK 465 LYS A 118 REMARK 465 VAL A 119 REMARK 465 VAL A 120 REMARK 465 VAL A 121 REMARK 465 ASN A 122 REMARK 465 THR A 123 REMARK 465 ASP A 124 REMARK 465 PRO A 125 REMARK 465 VAL A 126 REMARK 465 SER A 127 REMARK 465 ARG A 128 REMARK 465 TYR A 129 REMARK 465 THR A 130 REMARK 465 GLN A 131 REMARK 465 GLN A 132 REMARK 465 LEU A 133 REMARK 465 ARG A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 LEU A 137 REMARK 465 GLY A 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE1 PHE A 50 HZ2 LYS A 70 1.25 REMARK 500 HG2 GLN A 91 HG2 GLN A 92 1.25 REMARK 500 HG21 VAL A 75 H GLY A 79 1.27 REMARK 500 HB VAL A 58 HD3 LYS A 67 1.32 REMARK 500 HE21 GLN A 91 HE21 GLN A 92 1.35 REMARK 500 O PRO A 62 HG1 THR A 63 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 15 -99.80 47.59 REMARK 500 1 PRO A 18 -76.11 -89.85 REMARK 500 1 ASN A 26 42.54 -100.87 REMARK 500 1 ILE A 34 -70.76 -171.06 REMARK 500 1 ARG A 35 -51.84 -123.79 REMARK 500 1 ASN A 36 -48.85 70.37 REMARK 500 1 TYR A 49 -15.03 -169.00 REMARK 500 1 PHE A 50 43.74 -76.36 REMARK 500 1 CYS A 61 -69.19 -108.21 REMARK 500 1 THR A 63 -176.41 54.19 REMARK 500 1 GLN A 76 -22.76 67.74 REMARK 500 1 SER A 77 -72.24 -135.06 REMARK 500 1 GLN A 92 91.56 157.28 REMARK 500 2 ALA A 13 -69.76 -121.63 REMARK 500 2 MET A 14 56.60 -151.89 REMARK 500 2 SER A 16 -68.26 -141.07 REMARK 500 2 HIS A 17 67.69 -152.95 REMARK 500 2 ILE A 34 -52.97 -150.31 REMARK 500 2 ARG A 35 -28.34 172.94 REMARK 500 2 ASN A 36 -28.01 78.04 REMARK 500 2 TYR A 49 -15.83 -175.95 REMARK 500 2 PHE A 50 37.44 -75.30 REMARK 500 2 THR A 63 -178.13 57.52 REMARK 500 2 GLN A 76 -41.65 81.34 REMARK 500 2 SER A 77 -44.53 -142.21 REMARK 500 2 GLN A 92 78.57 163.16 REMARK 500 3 MET A 14 -33.63 72.30 REMARK 500 3 GLU A 15 -90.51 61.88 REMARK 500 3 SER A 16 32.06 -152.16 REMARK 500 3 HIS A 17 67.67 61.56 REMARK 500 3 PRO A 18 -91.28 -76.60 REMARK 500 3 ILE A 34 -66.66 -139.67 REMARK 500 3 ARG A 35 -39.63 -137.20 REMARK 500 3 ASN A 36 -46.67 71.66 REMARK 500 3 TYR A 49 -20.10 -171.92 REMARK 500 3 PHE A 50 27.66 -75.64 REMARK 500 3 CYS A 61 -65.46 -105.54 REMARK 500 3 THR A 63 -177.61 56.39 REMARK 500 3 GLN A 76 -12.47 67.01 REMARK 500 3 SER A 77 -68.78 -147.53 REMARK 500 3 LYS A 78 47.47 -81.06 REMARK 500 3 GLN A 92 89.61 160.05 REMARK 500 3 PHE A 109 111.63 70.53 REMARK 500 4 SER A 16 -83.96 -139.25 REMARK 500 4 ILE A 34 -63.71 -149.26 REMARK 500 4 ARG A 35 -25.57 -149.85 REMARK 500 4 ASN A 36 -48.38 74.38 REMARK 500 4 TYR A 49 -20.59 -169.80 REMARK 500 4 CYS A 61 -63.45 -103.76 REMARK 500 4 THR A 63 177.11 54.40 REMARK 500 REMARK 500 THIS ENTRY HAS 114 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6843 RELATED DB: BMRB DBREF 2B1W A 15 138 UNP Q9Y239 CARD4_HUMAN 15 138 SEQADV 2B1W GLY A 12 UNP Q9Y239 EXPRESSION TAG SEQADV 2B1W ALA A 13 UNP Q9Y239 EXPRESSION TAG SEQADV 2B1W MET A 14 UNP Q9Y239 EXPRESSION TAG SEQRES 1 A 127 GLY ALA MET GLU SER HIS PRO HIS ILE GLN LEU LEU LYS SEQRES 2 A 127 SER ASN ARG GLU LEU LEU VAL THR HIS ILE ARG ASN THR SEQRES 3 A 127 GLN CYS LEU VAL ASP ASN LEU LEU LYS ASN ASP TYR PHE SEQRES 4 A 127 SER ALA GLU ASP ALA GLU ILE VAL CYS ALA CYS PRO THR SEQRES 5 A 127 GLN PRO ASP LYS VAL ARG LYS ILE LEU ASP LEU VAL GLN SEQRES 6 A 127 SER LYS GLY GLU GLU VAL SER GLU PHE PHE LEU TYR LEU SEQRES 7 A 127 LEU GLN GLN LEU ALA ASP ALA TYR VAL ASP LEU ARG PRO SEQRES 8 A 127 TRP LEU LEU GLU ILE GLY PHE SER PRO SER LEU LEU THR SEQRES 9 A 127 GLN SER LYS VAL VAL VAL ASN THR ASP PRO VAL SER ARG SEQRES 10 A 127 TYR THR GLN GLN LEU ARG HIS HIS LEU GLY HELIX 1 1 PRO A 18 ASN A 26 1 9 HELIX 2 2 ASN A 26 ILE A 34 1 9 HELIX 3 3 THR A 37 ASP A 48 1 12 HELIX 4 4 SER A 51 ALA A 60 1 10 HELIX 5 5 PRO A 62 GLN A 76 1 15 HELIX 6 6 SER A 77 GLN A 92 1 16 HELIX 7 7 GLN A 92 GLY A 108 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1