HEADER PEPTIDE BINDING PROTEIN 19-SEP-05 2B2T TITLE TANDEM CHROMODOMAINS OF HUMAN CHD1 COMPLEXED WITH HISTONE H3 TAIL TITLE 2 CONTAINING TRIMETHYLLYSINE 4 AND PHOSPHOTHREONINE 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 268-443; COMPND 5 SYNONYM: CHD-1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1; COMPND 10 CHAIN: C; COMPND 11 FRAGMENT: RESIDUES 268-373; COMPND 12 SYNONYM: CHD-1; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: HISTONE H3 TAIL; COMPND 16 CHAIN: D; COMPND 17 FRAGMENT: RESIDUES 1-19; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CHD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CHD1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HOMO SAPIENS SOURCE 24 (HUMANS). KEYWDS CHD, CHROMODOMAIN, THREE STRANDED ANTIPARALLEL BETA SHEET, ALPHA KEYWDS 2 HELIX LINKER, HISTONE H3, TRIMETHYLLYSINE, PHOSPHOTHREONINE, PEPTIDE KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.F.FLANAGAN IV,L.-Z.MI,M.CHRUSZCZ,M.CYMBOROWSKI,K.L.CLINES,Y.KIM, AUTHOR 2 W.MINOR,F.RASTINEJAD,S.KHORASANIZADEH REVDAT 4 13-APR-22 2B2T 1 AUTHOR JRNL SEQADV LINK REVDAT 3 11-OCT-17 2B2T 1 REMARK REVDAT 2 24-FEB-09 2B2T 1 VERSN REVDAT 1 27-DEC-05 2B2T 0 JRNL AUTH J.F.FLANAGAN,L.Z.MI,M.CHRUSZCZ,M.CYMBOROWSKI,K.L.CLINES, JRNL AUTH 2 Y.KIM,W.MINOR,F.RASTINEJAD,S.KHORASANIZADEH JRNL TITL DOUBLE CHROMODOMAINS COOPERATE TO RECOGNIZE THE METHYLATED JRNL TITL 2 HISTONE H3 TAIL. JRNL REF NATURE V. 438 1181 2005 JRNL REFN ISSN 0028-0836 JRNL PMID 16372014 JRNL DOI 10.1038/NATURE04290 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 41.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 19575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1337 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1964 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.79400 REMARK 3 B22 (A**2) : -3.65400 REMARK 3 B33 (A**2) : -3.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.54200 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.880 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 43.21 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034605. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-04; NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0; NULL; NULL REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; NULL; NULL REMARK 200 RADIATION SOURCE : APS; NULL; NULL REMARK 200 BEAMLINE : 22-ID; NULL; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926, 0.97939, 0.97240; NULL; REMARK 200 NULL REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYSTAL DOUBLE REMARK 200 CRYSTAL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL; NULL REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21731 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42600 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; NULL; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% PEG3350, 0.05M HEPES, PH 8.0, 10MM REMARK 280 BTP, 12.5MM NACL, 5MM TCEP, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 283K, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.99300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.34300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.99300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.34300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). ACCORDING TO AUTHORS, THE REMARK 300 BIOLOGICAL UNIT OF THE PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 311 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 GLU A 10 REMARK 465 LYS A 187 REMARK 465 MSE B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 ASN B 52 REMARK 465 ALA B 145 REMARK 465 ALA B 146 REMARK 465 LYS B 187 REMARK 465 MSE C 1 REMARK 465 LYS C 2 REMARK 465 LYS C 3 REMARK 465 HIS C 4 REMARK 465 HIS C 5 REMARK 465 HIS C 6 REMARK 465 HIS C 7 REMARK 465 HIS C 8 REMARK 465 HIS C 9 REMARK 465 GLU C 10 REMARK 465 GLU C 11 REMARK 465 ASP C 98 REMARK 465 GLN C 99 REMARK 465 GLU C 100 REMARK 465 THR C 101 REMARK 465 LYS C 102 REMARK 465 ARG C 103 REMARK 465 TRP C 104 REMARK 465 LEU C 105 REMARK 465 LYS C 106 REMARK 465 ASN C 107 REMARK 465 ALA C 108 REMARK 465 SER C 109 REMARK 465 PRO C 110 REMARK 465 GLU C 111 REMARK 465 ASP C 112 REMARK 465 VAL C 113 REMARK 465 GLU C 114 REMARK 465 TYR C 115 REMARK 465 THR D 6 REMARK 465 ALA D 7 REMARK 465 ARG D 8 REMARK 465 LYS D 9 REMARK 465 SER D 10 REMARK 465 THR D 11 REMARK 465 GLY D 12 REMARK 465 GLY D 13 REMARK 465 LYS D 14 REMARK 465 ALA D 15 REMARK 465 PRO D 16 REMARK 465 ARG D 17 REMARK 465 LYS D 18 REMARK 465 GLN D 19 REMARK 465 TYR D 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLU B 10 CG CD OE1 OE2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 GLU B 12 CG CD OE1 OE2 REMARK 470 PHE B 13 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 GLN B 142 CG CD OE1 NE2 REMARK 470 SER B 144 OG REMARK 470 ARG B 185 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 50 OE1 GLU A 50 2555 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 51 N - CA - C ANGL. DEV. = -27.3 DEGREES REMARK 500 PRO A 55 C - N - CD ANGL. DEV. = -18.0 DEGREES REMARK 500 GLY A 56 N - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 GLU A 57 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 ALA A 108 CB - CA - C ANGL. DEV. = 21.7 DEGREES REMARK 500 LYS A 186 CB - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 GLU B 11 CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 ALA B 32 CB - CA - C ANGL. DEV. = -20.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 12 -74.14 -117.71 REMARK 500 PHE A 13 174.31 85.89 REMARK 500 MSE A 20 -114.28 -94.65 REMARK 500 ALA A 47 -75.84 -32.87 REMARK 500 GLU A 50 73.69 27.47 REMARK 500 ASN A 52 -16.86 91.87 REMARK 500 GLU A 54 131.10 -25.80 REMARK 500 PRO A 55 -117.86 -5.36 REMARK 500 TRP A 104 65.70 -104.57 REMARK 500 LYS A 106 -61.91 -25.22 REMARK 500 ASN A 107 -62.58 -141.90 REMARK 500 ALA A 108 175.91 70.72 REMARK 500 ARG A 135 132.78 -178.38 REMARK 500 GLU B 11 173.50 64.12 REMARK 500 ALA B 32 2.99 56.33 REMARK 500 PRO B 55 167.59 -49.55 REMARK 500 ARG B 103 -74.98 -65.37 REMARK 500 ARG B 135 135.93 174.29 REMARK 500 LYS B 143 150.47 176.74 REMARK 500 ARG B 185 46.24 -78.18 REMARK 500 ARG C 18 148.86 -171.33 REMARK 500 ALA C 47 -125.27 20.18 REMARK 500 LYS C 51 37.76 -99.21 REMARK 500 PRO C 55 83.28 -29.34 REMARK 500 ASN C 84 37.37 70.58 REMARK 500 LEU C 91 -70.90 -73.90 REMARK 500 LYS C 95 24.73 -69.96 REMARK 500 LYS C 96 -35.08 -148.41 REMARK 500 M3L D 4 -7.65 -52.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 48 PHE A 49 -125.95 REMARK 500 GLY B 48 PHE B 49 -139.86 REMARK 500 LYS C 53 GLU C 54 147.58 REMARK 500 GLU C 54 PRO C 55 46.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KNA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TH CHROMO DOMAIN OF HP1 COMPLEXED WITH HISTONE REMARK 900 H3 TAIL CONTAINING DIMETHYLLYSINE 9 REMARK 900 RELATED ID: 1KNE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CHROMO DOMAIN OF HP1 COMPLEXED WITH REMARK 900 HISTONE H3 TAIL CONTAINING TRIMETHYLLYSINE 9 REMARK 900 RELATED ID: 1Q3L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CHROMODOMAIN OF HP1 COMPLEXED WITH HISTONE REMARK 900 H3 TAIL CONTAINING MONOMETHYLLYSINE 9 REMARK 900 RELATED ID: 1PDQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE POLYCOMB CHROMODOMAIN COMPLEXED WITH THE REMARK 900 HISTONE H3 TAIL CONTAINING TRIMETHYLLYSINE 27 REMARK 900 RELATED ID: 2B2U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TANDEM CHROMODOMAINS OF HUMAN CHD1 REMARK 900 COMPLEXED WITH HISTONE H3 TAIL CONTAINING TRIMETHYLLYSINE 4 AND REMARK 900 DIMETHYLARGININE 2 REMARK 900 RELATED ID: 2B2V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CHD1 CHROMODOMAINS 1 AND 2 BOUND TO REMARK 900 HISTONE H3 RESI 1-15 MEK4 REMARK 900 RELATED ID: 2B2W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF THE TANDEM CHROMODOMAINS OF HUMAN CHD1 REMARK 900 COMPLEXED WITH HISTONE H3 TAIL CONTAINING TRIMETHYLLYSINE 4 REMARK 900 RELATED ID: 2B2Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TANDEM CHROMODOMAINS OF HUMAN CHD1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SELENOMETHIONINE AT POSITION 1 IN CHAINS A, B, C IS A REMARK 999 MODIFIED METHIONINE RESIDUE AND A CLONING ARTIFACT. REMARK 999 SELENOMETHIONINE AT POSITION 178 IS A MODIFIED RESIDUE REMARK 999 AND A RESULT OF C436M MUTATION IN CHAINS A AND B. TYROSINE REMARK 999 AT POSITION 20 IS A SYNTHETIC MODIFICATION AND DOES NOT REMARK 999 EXIST IN HISTONE H3 DBREF 2B2T A 10 185 UNP O14646 CHD1_HUMAN 268 443 DBREF 2B2T B 10 185 UNP O14646 CHD1_HUMAN 268 443 DBREF 2B2T C 10 115 UNP O14646 CHD1_HUMAN 268 373 DBREF 2B2T D 1 19 UNP P68431 H31_HUMAN 1 19 SEQADV 2B2T MSE A 1 UNP O14646 SEE REMARK 999 SEQADV 2B2T LYS A 2 UNP O14646 CLONING ARTIFACT SEQADV 2B2T LYS A 3 UNP O14646 CLONING ARTIFACT SEQADV 2B2T HIS A 4 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS A 5 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS A 6 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS A 7 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS A 8 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS A 9 UNP O14646 EXPRESSION TAG SEQADV 2B2T MSE A 20 UNP O14646 MET 278 MODIFIED RESIDUE SEQADV 2B2T MSE A 88 UNP O14646 MET 346 MODIFIED RESIDUE SEQADV 2B2T MSE A 178 UNP O14646 CYS 436 SEE REMARK 999 SEQADV 2B2T LYS A 186 UNP O14646 CLONING ARTIFACT SEQADV 2B2T LYS A 187 UNP O14646 CLONING ARTIFACT SEQADV 2B2T MSE B 1 UNP O14646 SEE REMARK 999 SEQADV 2B2T LYS B 2 UNP O14646 CLONING ARTIFACT SEQADV 2B2T LYS B 3 UNP O14646 CLONING ARTIFACT SEQADV 2B2T HIS B 4 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS B 5 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS B 6 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS B 7 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS B 8 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS B 9 UNP O14646 EXPRESSION TAG SEQADV 2B2T MSE B 20 UNP O14646 MET 278 MODIFIED RESIDUE SEQADV 2B2T MSE B 88 UNP O14646 MET 346 MODIFIED RESIDUE SEQADV 2B2T MSE B 178 UNP O14646 CYS 436 SEE REMARK 999 SEQADV 2B2T LYS B 186 UNP O14646 CLONING ARTIFACT SEQADV 2B2T LYS B 187 UNP O14646 CLONING ARTIFACT SEQADV 2B2T MSE C 1 UNP O14646 SEE REMARK 999 SEQADV 2B2T LYS C 2 UNP O14646 CLONING ARTIFACT SEQADV 2B2T LYS C 3 UNP O14646 CLONING ARTIFACT SEQADV 2B2T HIS C 4 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS C 5 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS C 6 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS C 7 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS C 8 UNP O14646 EXPRESSION TAG SEQADV 2B2T HIS C 9 UNP O14646 EXPRESSION TAG SEQADV 2B2T MSE C 20 UNP O14646 MET 278 MODIFIED RESIDUE SEQADV 2B2T MSE C 88 UNP O14646 MET 346 MODIFIED RESIDUE SEQADV 2B2T TPO D 3 UNP P68431 THR 3 MODIFIED RESIDUE SEQADV 2B2T M3L D 4 UNP P68431 LYS 4 MODIFIED RESIDUE SEQADV 2B2T TYR D 20 UNP P68431 SEE REMARK 999 SEQRES 1 A 187 MSE LYS LYS HIS HIS HIS HIS HIS HIS GLU GLU GLU PHE SEQRES 2 A 187 GLU THR ILE GLU ARG PHE MSE ASP CYS ARG ILE GLY ARG SEQRES 3 A 187 LYS GLY ALA THR GLY ALA THR THR THR ILE TYR ALA VAL SEQRES 4 A 187 GLU ALA ASP GLY ASP PRO ASN ALA GLY PHE GLU LYS ASN SEQRES 5 A 187 LYS GLU PRO GLY GLU ILE GLN TYR LEU ILE LYS TRP LYS SEQRES 6 A 187 GLY TRP SER HIS ILE HIS ASN THR TRP GLU THR GLU GLU SEQRES 7 A 187 THR LEU LYS GLN GLN ASN VAL ARG GLY MSE LYS LYS LEU SEQRES 8 A 187 ASP ASN TYR LYS LYS LYS ASP GLN GLU THR LYS ARG TRP SEQRES 9 A 187 LEU LYS ASN ALA SER PRO GLU ASP VAL GLU TYR TYR ASN SEQRES 10 A 187 CYS GLN GLN GLU LEU THR ASP ASP LEU HIS LYS GLN TYR SEQRES 11 A 187 GLN ILE VAL GLY ARG ILE ILE ALA HIS SER ASN GLN LYS SEQRES 12 A 187 SER ALA ALA GLY TYR PRO ASP TYR TYR CYS LYS TRP GLN SEQRES 13 A 187 GLY LEU PRO TYR SER GLU CYS SER TRP GLU ASP GLY ALA SEQRES 14 A 187 LEU ILE SER LYS LYS PHE GLN ALA MSE ILE ASP GLU TYR SEQRES 15 A 187 PHE SER ARG LYS LYS SEQRES 1 B 187 MSE LYS LYS HIS HIS HIS HIS HIS HIS GLU GLU GLU PHE SEQRES 2 B 187 GLU THR ILE GLU ARG PHE MSE ASP CYS ARG ILE GLY ARG SEQRES 3 B 187 LYS GLY ALA THR GLY ALA THR THR THR ILE TYR ALA VAL SEQRES 4 B 187 GLU ALA ASP GLY ASP PRO ASN ALA GLY PHE GLU LYS ASN SEQRES 5 B 187 LYS GLU PRO GLY GLU ILE GLN TYR LEU ILE LYS TRP LYS SEQRES 6 B 187 GLY TRP SER HIS ILE HIS ASN THR TRP GLU THR GLU GLU SEQRES 7 B 187 THR LEU LYS GLN GLN ASN VAL ARG GLY MSE LYS LYS LEU SEQRES 8 B 187 ASP ASN TYR LYS LYS LYS ASP GLN GLU THR LYS ARG TRP SEQRES 9 B 187 LEU LYS ASN ALA SER PRO GLU ASP VAL GLU TYR TYR ASN SEQRES 10 B 187 CYS GLN GLN GLU LEU THR ASP ASP LEU HIS LYS GLN TYR SEQRES 11 B 187 GLN ILE VAL GLY ARG ILE ILE ALA HIS SER ASN GLN LYS SEQRES 12 B 187 SER ALA ALA GLY TYR PRO ASP TYR TYR CYS LYS TRP GLN SEQRES 13 B 187 GLY LEU PRO TYR SER GLU CYS SER TRP GLU ASP GLY ALA SEQRES 14 B 187 LEU ILE SER LYS LYS PHE GLN ALA MSE ILE ASP GLU TYR SEQRES 15 B 187 PHE SER ARG LYS LYS SEQRES 1 C 115 MSE LYS LYS HIS HIS HIS HIS HIS HIS GLU GLU GLU PHE SEQRES 2 C 115 GLU THR ILE GLU ARG PHE MSE ASP CYS ARG ILE GLY ARG SEQRES 3 C 115 LYS GLY ALA THR GLY ALA THR THR THR ILE TYR ALA VAL SEQRES 4 C 115 GLU ALA ASP GLY ASP PRO ASN ALA GLY PHE GLU LYS ASN SEQRES 5 C 115 LYS GLU PRO GLY GLU ILE GLN TYR LEU ILE LYS TRP LYS SEQRES 6 C 115 GLY TRP SER HIS ILE HIS ASN THR TRP GLU THR GLU GLU SEQRES 7 C 115 THR LEU LYS GLN GLN ASN VAL ARG GLY MSE LYS LYS LEU SEQRES 8 C 115 ASP ASN TYR LYS LYS LYS ASP GLN GLU THR LYS ARG TRP SEQRES 9 C 115 LEU LYS ASN ALA SER PRO GLU ASP VAL GLU TYR SEQRES 1 D 20 ALA ARG TPO M3L GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 D 20 LYS ALA PRO ARG LYS GLN TYR MODRES 2B2T MSE A 20 MET SELENOMETHIONINE MODRES 2B2T MSE A 88 MET SELENOMETHIONINE MODRES 2B2T MSE A 178 MET SELENOMETHIONINE MODRES 2B2T MSE B 20 MET SELENOMETHIONINE MODRES 2B2T MSE B 88 MET SELENOMETHIONINE MODRES 2B2T MSE B 178 MET SELENOMETHIONINE MODRES 2B2T MSE C 20 MET SELENOMETHIONINE MODRES 2B2T MSE C 88 MET SELENOMETHIONINE MODRES 2B2T TPO D 3 THR PHOSPHOTHREONINE MODRES 2B2T M3L D 4 LYS N-TRIMETHYLLYSINE HET MSE A 20 8 HET MSE A 88 8 HET MSE A 178 8 HET MSE B 20 8 HET MSE B 88 8 HET MSE B 178 8 HET MSE C 20 8 HET MSE C 88 8 HET TPO D 3 11 HET M3L D 4 12 HETNAM MSE SELENOMETHIONINE HETNAM TPO PHOSPHOTHREONINE HETNAM M3L N-TRIMETHYLLYSINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 4 TPO C4 H10 N O6 P FORMUL 4 M3L C9 H21 N2 O2 1+ FORMUL 5 HOH *258(H2 O) HELIX 1 1 GLY A 31 THR A 34 5 4 HELIX 2 2 THR A 35 GLY A 43 1 9 HELIX 3 3 SER A 68 ASN A 72 5 5 HELIX 4 4 THR A 76 GLN A 83 1 8 HELIX 5 5 MSE A 88 TRP A 104 1 17 HELIX 6 6 SER A 109 TYR A 130 1 22 HELIX 7 7 PRO A 159 CYS A 163 5 5 HELIX 8 8 ASP A 167 ARG A 185 1 19 HELIX 9 9 THR B 35 GLY B 43 1 9 HELIX 10 10 SER B 68 ASN B 72 5 5 HELIX 11 11 THR B 76 GLN B 83 1 8 HELIX 12 12 MSE B 88 LEU B 105 1 18 HELIX 13 13 SER B 109 TYR B 130 1 22 HELIX 14 14 PRO B 159 CYS B 163 5 5 HELIX 15 15 ASP B 167 ARG B 185 1 19 HELIX 16 16 GLY C 31 THR C 34 5 4 HELIX 17 17 THR C 35 GLY C 43 1 9 HELIX 18 18 SER C 68 ASN C 72 5 5 HELIX 19 19 THR C 76 ASN C 84 1 9 HELIX 20 20 MSE C 88 LYS C 95 1 8 SHEET 1 A 3 ILE A 16 ILE A 24 0 SHEET 2 A 3 ILE A 58 TRP A 64 -1 O GLN A 59 N ARG A 23 SHEET 3 A 3 THR A 73 GLU A 75 -1 O GLU A 75 N TYR A 60 SHEET 1 B 3 VAL A 133 HIS A 139 0 SHEET 2 B 3 TYR A 151 TRP A 155 -1 O TYR A 152 N ILE A 137 SHEET 3 B 3 SER A 164 GLU A 166 -1 O GLU A 166 N TYR A 151 SHEET 1 C 3 ILE B 16 GLY B 25 0 SHEET 2 C 3 GLU B 57 TRP B 64 -1 O LEU B 61 N ASP B 21 SHEET 3 C 3 THR B 73 GLU B 75 -1 O GLU B 75 N TYR B 60 SHEET 1 D 3 VAL B 133 HIS B 139 0 SHEET 2 D 3 TYR B 151 TRP B 155 -1 O TYR B 152 N ILE B 137 SHEET 3 D 3 SER B 164 GLU B 166 -1 O SER B 164 N CYS B 153 SHEET 1 E 3 ILE C 16 GLY C 25 0 SHEET 2 E 3 GLU C 57 TRP C 64 -1 O GLN C 59 N ARG C 23 SHEET 3 E 3 THR C 73 GLU C 75 -1 O THR C 73 N ILE C 62 LINK C PHE A 19 N MSE A 20 1555 1555 1.33 LINK C MSE A 20 N ASP A 21 1555 1555 1.32 LINK C GLY A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N LYS A 89 1555 1555 1.33 LINK C ALA A 177 N MSE A 178 1555 1555 1.34 LINK C MSE A 178 N ILE A 179 1555 1555 1.33 LINK C PHE B 19 N MSE B 20 1555 1555 1.33 LINK C MSE B 20 N ASP B 21 1555 1555 1.33 LINK C GLY B 87 N MSE B 88 1555 1555 1.33 LINK C MSE B 88 N LYS B 89 1555 1555 1.33 LINK C ALA B 177 N MSE B 178 1555 1555 1.33 LINK C MSE B 178 N ILE B 179 1555 1555 1.33 LINK C PHE C 19 N MSE C 20 1555 1555 1.33 LINK C MSE C 20 N ASP C 21 1555 1555 1.33 LINK C GLY C 87 N MSE C 88 1555 1555 1.33 LINK C MSE C 88 N LYS C 89 1555 1555 1.33 LINK C ARG D 2 N TPO D 3 1555 1555 1.33 LINK C TPO D 3 N M3L D 4 1555 1555 1.32 LINK C M3L D 4 N GLN D 5 1555 1555 1.33 CRYST1 111.986 54.686 100.989 90.00 112.15 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008930 0.000000 0.003635 0.00000 SCALE2 0.000000 0.018286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010691 0.00000