HEADER TRANSPORT PROTEIN 26-SEP-05 2B4L TITLE CRYSTAL STRUCTURE OF THE BINDING PROTEIN OPUAC IN COMPLEX WITH GLYCINE TITLE 2 BETAINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE BETAINE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: OPUAC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PBKB76 KEYWDS SUBSTRATE-BINDING PROTEIN, CLOSED LIGANDED, ABC-TRANSPORTER, KEYWDS 2 COMPATIBLE SOLUTES, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.HORN,L.SOHN-BOESSER,J.BREED,W.WELTE,L.SCHMITT,E.BREMER REVDAT 5 03-APR-24 2B4L 1 REMARK REVDAT 4 15-NOV-23 2B4L 1 REMARK ATOM REVDAT 3 13-JUL-11 2B4L 1 VERSN REVDAT 2 24-FEB-09 2B4L 1 VERSN REVDAT 1 21-MAR-06 2B4L 0 JRNL AUTH C.HORN,L.SOHN-BOESSER,J.BREED,W.WELTE,L.SCHMITT,E.BREMER JRNL TITL MOLECULAR DETERMINANTS FOR SUBSTRATE SPECIFICITY OF THE JRNL TITL 2 LIGAND-BINDING PROTEIN OPUAC FROM BACILLUS SUBTILIS FOR THE JRNL TITL 3 COMPATIBLE SOLUTES GLYCINE BETAINE AND PROLINE BETAINE. JRNL REF J.MOL.BIOL. V. 357 592 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16445940 JRNL DOI 10.1016/J.JMB.2005.12.085 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0000 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 16355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 886 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1016 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2091 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.32000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.045 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2160 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1948 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2905 ; 1.129 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4574 ; 0.778 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 8.582 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;40.834 ;26.071 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 389 ;16.422 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;10.358 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 320 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2338 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 381 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 456 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1971 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1181 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 187 ; 0.605 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.093 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.120 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.317 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1719 ; 0.502 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 549 ; 0.089 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2148 ; 0.632 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1005 ; 1.192 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 757 ; 1.819 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 96 REMARK 3 RESIDUE RANGE : A 251 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6973 5.2706 3.9495 REMARK 3 T TENSOR REMARK 3 T11: -0.2318 T22: -0.1891 REMARK 3 T33: -0.1724 T12: -0.0481 REMARK 3 T13: 0.0085 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.4229 L22: 2.4809 REMARK 3 L33: 4.1519 L12: 0.2457 REMARK 3 L13: -1.0479 L23: -0.7392 REMARK 3 S TENSOR REMARK 3 S11: -0.1543 S12: 0.1927 S13: -0.0744 REMARK 3 S21: -0.2828 S22: 0.0654 S23: -0.0264 REMARK 3 S31: 0.3124 S32: -0.2856 S33: 0.0889 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2668 20.3617 26.3768 REMARK 3 T TENSOR REMARK 3 T11: -0.0548 T22: -0.1547 REMARK 3 T33: -0.1151 T12: 0.0655 REMARK 3 T13: 0.0311 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.0827 L22: 1.9782 REMARK 3 L33: 3.6057 L12: 0.1106 REMARK 3 L13: 0.2003 L23: -0.3001 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: -0.0900 S13: 0.1678 REMARK 3 S21: 0.3857 S22: 0.0264 S23: 0.1122 REMARK 3 S31: -0.6792 S32: -0.2729 S33: -0.0325 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 273 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3022 10.4400 16.8242 REMARK 3 T TENSOR REMARK 3 T11: 0.0173 T22: 0.0699 REMARK 3 T33: 0.0743 T12: -0.0251 REMARK 3 T13: -0.0010 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 54.9196 L22: 86.6013 REMARK 3 L33: 35.4222 L12: -50.5897 REMARK 3 L13: 12.9738 L23: -47.9273 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0411 S13: -0.4202 REMARK 3 S21: 1.1651 S22: -0.7751 S23: -0.6034 REMARK 3 S31: 0.0703 S32: -1.2835 S33: 0.7700 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 274 A 282 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9392 12.6518 14.7414 REMARK 3 T TENSOR REMARK 3 T11: 0.2471 T22: 0.2753 REMARK 3 T33: 0.4098 T12: 0.0638 REMARK 3 T13: -0.0421 T23: 0.1326 REMARK 3 L TENSOR REMARK 3 L11: 0.8926 L22: 2.6867 REMARK 3 L33: 5.2697 L12: -0.3688 REMARK 3 L13: -2.0178 L23: 2.1733 REMARK 3 S TENSOR REMARK 3 S11: -0.0374 S12: 0.0567 S13: -0.1888 REMARK 3 S21: -0.3001 S22: 0.1251 S23: -0.2219 REMARK 3 S31: -0.1248 S32: 0.7003 S33: -0.0877 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 283 A 457 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9991 10.6528 16.2196 REMARK 3 T TENSOR REMARK 3 T11: 0.0293 T22: 0.1430 REMARK 3 T33: 0.1249 T12: -0.0005 REMARK 3 T13: -0.0003 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.9807 L22: 1.7073 REMARK 3 L33: 1.8301 L12: 0.0950 REMARK 3 L13: -0.3461 L23: -0.2621 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0729 S13: -0.0619 REMARK 3 S21: 0.1308 S22: 0.0447 S23: -0.0455 REMARK 3 S31: -0.0233 S32: 0.0535 S33: -0.0447 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2B4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18948 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 17.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28600 REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: SELENOMETHIONINE DERIVATIVE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, AMMONIUM ACETATE, PEG 4000, PH REMARK 280 8.25, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 274K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.90900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.85700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.24300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.85700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.90900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.24300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 179 O HOH A 423 1.77 REMARK 500 O HOH A 357 O HOH A 440 1.85 REMARK 500 OE1 GLU A 136 O HOH A 360 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD LYS A 140 OE2 GLU A 158 1655 1.89 REMARK 500 ND2 ASN A 7 O LYS A 238 2554 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 126 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 154 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 21 -149.88 -121.05 REMARK 500 LEU A 40 42.08 -105.09 REMARK 500 ALA A 48 -117.35 -159.93 REMARK 500 HIS A 152 77.32 -110.25 REMARK 500 LYS A 167 74.55 -110.74 REMARK 500 ALA A 177 45.09 -78.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 73 PRO A 74 73.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BET A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 282 DBREF 2B4L A 5 272 UNP P46922 OPUAC_BACSU 26 293 SEQRES 1 A 268 ASP GLU ASN ALA SER ALA ALA GLU GLN VAL ASN LYS THR SEQRES 2 A 268 ILE ILE GLY ILE ASP PRO GLY SER GLY ILE MET SER LEU SEQRES 3 A 268 THR ASP LYS ALA MET LYS ASP TYR ASP LEU ASN ASP TRP SEQRES 4 A 268 THR LEU ILE SER ALA SER SER ALA ALA MET THR ALA THR SEQRES 5 A 268 LEU LYS LYS SER TYR ASP ARG LYS LYS PRO ILE ILE ILE SEQRES 6 A 268 THR GLY TRP THR PRO HIS TRP MET PHE SER ARG TYR LYS SEQRES 7 A 268 LEU LYS TYR LEU ASP ASP PRO LYS GLN SER TYR GLY SER SEQRES 8 A 268 ALA GLU GLU ILE HIS THR ILE THR ARG LYS GLY PHE SER SEQRES 9 A 268 LYS GLU GLN PRO ASN ALA ALA LYS LEU LEU SER GLN PHE SEQRES 10 A 268 LYS TRP THR GLN ASP GLU MET GLY GLU ILE MET ILE LYS SEQRES 11 A 268 VAL GLU GLU GLY GLU LYS PRO ALA LYS VAL ALA ALA GLU SEQRES 12 A 268 TYR VAL ASN LYS HIS LYS ASP GLN ILE ALA GLU TRP THR SEQRES 13 A 268 LYS GLY VAL GLN LYS VAL LYS GLY ASP LYS ILE ASN LEU SEQRES 14 A 268 ALA TYR VAL ALA TRP ASP SER GLU ILE ALA SER THR ASN SEQRES 15 A 268 VAL ILE GLY LYS VAL LEU GLU ASP LEU GLY TYR GLU VAL SEQRES 16 A 268 THR LEU THR GLN VAL GLU ALA GLY PRO MET TRP THR ALA SEQRES 17 A 268 ILE ALA THR GLY SER ALA ASP ALA SER LEU SER ALA TRP SEQRES 18 A 268 LEU PRO ASN THR HIS LYS ALA TYR ALA ALA LYS TYR LYS SEQRES 19 A 268 GLY LYS TYR ASP ASP ILE GLY THR SER MET THR GLY VAL SEQRES 20 A 268 LYS MET GLY LEU VAL VAL PRO GLN TYR MET LYS ASN VAL SEQRES 21 A 268 ASN SER ILE GLU ASP LEU LYS LYS HET BET A 273 8 HET EDO A 274 4 HET EDO A 275 4 HET EDO A 276 4 HET EDO A 277 4 HET EDO A 278 4 HET EDO A 279 4 HET EDO A 280 4 HET EDO A 281 4 HET EDO A 282 4 HETNAM BET TRIMETHYL GLYCINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 BET C5 H12 N O2 1+ FORMUL 3 EDO 9(C2 H6 O2) FORMUL 12 HOH *162(H2 O) HELIX 1 1 SER A 9 VAL A 14 1 6 HELIX 2 2 SER A 25 TYR A 38 1 14 HELIX 3 3 SER A 49 ARG A 63 1 15 HELIX 4 4 TRP A 76 TYR A 81 1 6 HELIX 5 5 GLY A 106 GLN A 111 1 6 HELIX 6 6 GLN A 111 GLN A 120 1 10 HELIX 7 7 THR A 124 GLU A 137 1 14 HELIX 8 8 LYS A 140 HIS A 152 1 13 HELIX 9 9 HIS A 152 THR A 160 1 9 HELIX 10 10 TRP A 178 GLY A 196 1 19 HELIX 11 11 GLY A 207 THR A 215 1 9 HELIX 12 12 HIS A 230 TYR A 237 1 8 HELIX 13 13 SER A 266 LYS A 271 5 6 SHEET 1 A 2 THR A 17 ILE A 19 0 SHEET 2 A 2 THR A 44 ILE A 46 1 O ILE A 46 N ILE A 18 SHEET 1 B 3 ILE A 69 THR A 73 0 SHEET 2 B 3 TYR A 241 PRO A 258 -1 O VAL A 256 N ILE A 69 SHEET 3 B 3 LEU A 83 TYR A 85 -1 N LYS A 84 O VAL A 257 SHEET 1 C 6 ILE A 69 THR A 73 0 SHEET 2 C 6 TYR A 241 PRO A 258 -1 O VAL A 256 N ILE A 69 SHEET 3 C 6 GLU A 97 ARG A 104 -1 N THR A 103 O ASP A 242 SHEET 4 C 6 ALA A 220 LEU A 226 -1 O ALA A 224 N HIS A 100 SHEET 5 C 6 LYS A 170 TYR A 175 1 N ALA A 174 O ALA A 220 SHEET 6 C 6 GLU A 198 GLN A 203 1 O THR A 202 N LEU A 173 CISPEP 1 LEU A 226 PRO A 227 0 4.63 SITE 1 AC1 9 ILE A 21 SER A 25 GLY A 26 ILE A 27 SITE 2 AC1 9 TRP A 178 GLU A 181 TRP A 225 THR A 229 SITE 3 AC1 9 HIS A 230 SITE 1 AC2 2 ILE A 19 THR A 56 SITE 1 AC3 5 ARG A 63 SER A 79 ARG A 80 ILE A 133 SITE 2 AC3 5 HOH A 313 SITE 1 AC4 6 TYR A 93 GLY A 94 SER A 95 ALA A 96 SITE 2 AC4 6 VAL A 251 MET A 253 SITE 1 AC5 4 ILE A 171 ASN A 172 THR A 200 EDO A 278 SITE 1 AC6 6 ASN A 172 GLY A 216 SER A 217 ALA A 218 SITE 2 AC6 6 ASP A 219 EDO A 277 SITE 1 AC7 3 ASP A 5 GLU A 12 HOH A 444 SITE 1 AC8 3 SER A 29 ASP A 32 LYS A 33 SITE 1 AC9 8 THR A 54 LYS A 58 TRP A 76 ARG A 80 SITE 2 AC9 8 TYR A 81 GLU A 136 HOH A 329 HOH A 440 SITE 1 BC1 6 LYS A 122 TRP A 123 SER A 247 MET A 248 SITE 2 BC1 6 THR A 249 HOH A 336 CRYST1 29.818 88.486 95.714 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033537 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011301 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010448 0.00000