HEADER TRANSFERASE/RNA BINDING PROTEIN 26-SEP-05 2B4V TITLE STRUCTURAL BASIS FOR UTP SPECIFICITY OF RNA EDITING TUTASES FROM TITLE 2 TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA EDITING COMPLEX PROTEIN MP57; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TBRET2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: TBMP57; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX HTA KEYWDS TBRET2, TBMP57, RNA EDITING, TERMINAL URIDYLYL TRANSFERASE, KEYWDS 2 TRYPANOSOMA BRUCEI, EDITOSOME, TRANSFERASE-RNA BINDING PROTEIN KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.DENG,N.L.ERNST,S.TURLEY,K.D.STUART,W.G.HOL REVDAT 4 20-OCT-21 2B4V 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2B4V 1 VERSN REVDAT 2 27-DEC-05 2B4V 1 JRNL REVDAT 1 22-NOV-05 2B4V 0 JRNL AUTH J.DENG,N.L.ERNST,S.TURLEY,K.D.STUART,W.G.HOL JRNL TITL STRUCTURAL BASIS FOR UTP SPECIFICITY OF RNA EDITING TUTASES JRNL TITL 2 FROM TRYPANOSOMA BRUCEI. JRNL REF EMBO J. V. 24 4007 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 16281058 JRNL DOI 10.1038/SJ.EMBOJ.7600861 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 61639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3265 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3520 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 522 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B4V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034677. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-04; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-ID; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.95667; 0.97943 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65185 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 39.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.66200 REMARK 200 R SYM FOR SHELL (I) : 0.66200 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0 M KCL, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.64150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.78650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.78650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.82075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.78650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.78650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.46225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.78650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.78650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.82075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.78650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.78650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.46225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.64150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 20 REMARK 465 PRO A 21 REMARK 465 LEU A 22 REMARK 465 SER A 23 REMARK 465 LEU A 24 REMARK 465 PRO A 25 REMARK 465 SER A 26 REMARK 465 THR A 27 REMARK 465 LYS A 28 REMARK 465 LEU A 29 REMARK 465 VAL A 308 REMARK 465 GLY A 309 REMARK 465 ALA A 310 REMARK 465 GLY A 311 REMARK 465 SER A 312 REMARK 465 VAL A 472 REMARK 465 LYS A 473 REMARK 465 ARG A 474 REMARK 465 ALA A 475 REMARK 465 ASP A 476 REMARK 465 LEU A 477 REMARK 465 ARG A 478 REMARK 465 HIS A 479 REMARK 465 PHE A 480 REMARK 465 GLU A 481 REMARK 465 ARG A 482 REMARK 465 ASP A 483 REMARK 465 ARG A 484 REMARK 465 ASP A 485 REMARK 465 ARG A 486 REMARK 465 GLU A 487 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 30 CG OD1 ND2 REMARK 470 ASP A 105 OD2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 LYS A 157 CD CE NZ REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 213 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 434 CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 104 -153.20 -121.94 REMARK 500 ASN A 183 -4.16 81.73 REMARK 500 THR A 211 -169.08 -111.79 REMARK 500 ARG A 394 174.57 178.06 REMARK 500 ASN A 404 76.93 -103.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 213 GLY A 214 -63.92 REMARK 500 GLY A 214 CYS A 215 127.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 1 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 285 O REMARK 620 2 HIS A 286 O 76.9 REMARK 620 3 GLY A 288 O 108.6 85.5 REMARK 620 4 PRO A 289 O 104.9 146.9 62.2 REMARK 620 5 HOH A 516 O 69.2 135.6 131.7 71.7 REMARK 620 6 HOH A 696 O 126.9 95.0 123.2 108.6 83.7 REMARK 620 7 HOH A 701 O 158.7 82.2 65.4 90.5 130.8 58.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1 DBREF 2B4V A 20 487 UNP Q86MV5 Q86MV5_9TRYP 20 487 SEQADV 2B4V MSE A 44 UNP Q86MV5 MET 44 MODIFIED RESIDUE SEQADV 2B4V MSE A 56 UNP Q86MV5 MET 56 MODIFIED RESIDUE SEQADV 2B4V MSE A 86 UNP Q86MV5 MET 86 MODIFIED RESIDUE SEQADV 2B4V MSE A 92 UNP Q86MV5 MET 92 MODIFIED RESIDUE SEQADV 2B4V ARG A 94 UNP Q86MV5 TRP 94 ENGINEERED MUTATION SEQADV 2B4V MSE A 103 UNP Q86MV5 MET 103 MODIFIED RESIDUE SEQADV 2B4V ARG A 122 UNP Q86MV5 TRP 122 ENGINEERED MUTATION SEQADV 2B4V MSE A 198 UNP Q86MV5 MET 198 MODIFIED RESIDUE SEQADV 2B4V ARG A 207 UNP Q86MV5 TRP 207 ENGINEERED MUTATION SEQADV 2B4V MSE A 227 UNP Q86MV5 MET 227 MODIFIED RESIDUE SEQADV 2B4V MSE A 240 UNP Q86MV5 MET 240 MODIFIED RESIDUE SEQADV 2B4V MSE A 244 UNP Q86MV5 MET 244 MODIFIED RESIDUE SEQADV 2B4V MSE A 261 UNP Q86MV5 MET 261 MODIFIED RESIDUE SEQADV 2B4V MSE A 263 UNP Q86MV5 MET 263 MODIFIED RESIDUE SEQADV 2B4V MSE A 297 UNP Q86MV5 MET 297 MODIFIED RESIDUE SEQADV 2B4V MSE A 315 UNP Q86MV5 MET 315 MODIFIED RESIDUE SEQADV 2B4V MSE A 324 UNP Q86MV5 MET 324 MODIFIED RESIDUE SEQADV 2B4V MSE A 456 UNP Q86MV5 MET 456 MODIFIED RESIDUE SEQRES 1 A 468 SER PRO LEU SER LEU PRO SER THR LYS LEU ASN PRO SER SEQRES 2 A 468 PRO ASP HIS TYR ALA VAL TRP GLY LYS ALA ILE MSE ALA SEQRES 3 A 468 GLU ASN ASN ARG ARG VAL GLY PRO GLU HIS MSE PHE ARG SEQRES 4 A 468 THR ALA ILE ARG ALA GLN GLN GLN LEU GLN GLY LEU ALA SEQRES 5 A 468 ASP LYS TRP THR PRO ASP ALA LYS VAL TYR CYS CYS GLY SEQRES 6 A 468 SER MSE VAL THR TYR GLY GLN MSE GLU ARG GLY SER ASP SEQRES 7 A 468 LEU ASP LEU ALA CYS MSE PHE ASP ASP PRO TYR PRO SER SEQRES 8 A 468 HIS GLU VAL GLN ALA LYS ARG THR ASP LYS LEU ARG THR SEQRES 9 A 468 VAL ILE LYS ARG TYR VAL PRO HIS TYR LEU ARG ASN ASN SEQRES 10 A 468 LEU LEU GLY LEU THR GLU ALA ARG THR PRO VAL VAL LYS SEQRES 11 A 468 LEU ARG PHE ALA ASN ASP GLU LYS VAL ALA ARG ALA ARG SEQRES 12 A 468 TYR THR PRO LEU SER GLU GLU GLU ASP ARG LYS ALA ARG SEQRES 13 A 468 THR ALA LEU LEU ASP VAL ARG ASN GLN CYS VAL GLY ASP SEQRES 14 A 468 ASN ASP VAL GLU TYR ILE ALA GLU LYS MSE GLY ARG ASP SEQRES 15 A 468 ASN VAL GLU GLY ILE ARG VAL ASP ARG THR THR TYR GLY SEQRES 16 A 468 CYS ARG ILE ALA ILE GLN CYS THR SER LYS GLU GLN MSE SEQRES 17 A 468 ILE GLU ALA ILE GLY PHE PHE PRO ASP GLY LYS ILE MSE SEQRES 18 A 468 THR ARG GLY MSE ARG GLU ASP TYR THR ARG ASP VAL LEU SEQRES 19 A 468 ASP VAL ARG PHE VAL PRO GLU MSE PHE MSE TYR ARG TRP SEQRES 20 A 468 ASP ILE SER PHE VAL GLY TYR GLY VAL LYS ASN SER TYR SEQRES 21 A 468 LEU ILE ARG HIS TYR LEU HIS ASN GLY PRO VAL ALA ALA SEQRES 22 A 468 ARG HIS THR ALA MSE ALA VAL LYS ALA TRP GLY LYS ALA SEQRES 23 A 468 THR ASN VAL GLY ALA GLY SER GLY ALA MSE LEU THR SER SEQRES 24 A 468 TYR ALA VAL THR VAL MSE PHE ILE TYR TYR LEU LEU VAL SEQRES 25 A 468 THR ARG GLN VAL LEU TRP VAL ASP PRO TRP SER LEU PRO SEQRES 26 A 468 HIS PRO ALA HIS LEU PRO ARG TYR PRO ASP PHE SER PRO SEQRES 27 A 468 LEU TYR ASP CYS ASP PRO THR GLU LEU GLY ARG LEU LEU SEQRES 28 A 468 HIS GLY PHE PHE ILE PHE TYR ALA HIS HIS PHE ASP TYR SEQRES 29 A 468 GLU ARG GLU VAL VAL SER LEU ASN ARG ASN ARG ARG SER SEQRES 30 A 468 TYR ARG SER ASP ILE GLY TRP ASN PHE PRO GLN ASN LYS SEQRES 31 A 468 LYS GLY THR PHE SER TYR ASN PHE CYS ILE GLU ASP PRO SEQRES 32 A 468 TYR GLU ASP VAL GLY THR GLY GLY LEU ASN LEU VAL ARG SEQRES 33 A 468 HIS LEU HIS PRO ALA LYS PHE GLN LEU VAL LYS GLN GLU SEQRES 34 A 468 PHE LEU ARG ALA ALA GLN CYS MSE GLU ARG PHE LEU PRO SEQRES 35 A 468 THR ASN ALA PRO GLU LYS SER ILE LEU GLY VAL LYS ARG SEQRES 36 A 468 ALA ASP LEU ARG HIS PHE GLU ARG ASP ARG ASP ARG GLU MODRES 2B4V MSE A 44 MET SELENOMETHIONINE MODRES 2B4V MSE A 56 MET SELENOMETHIONINE MODRES 2B4V MSE A 86 MET SELENOMETHIONINE MODRES 2B4V MSE A 92 MET SELENOMETHIONINE MODRES 2B4V MSE A 103 MET SELENOMETHIONINE MODRES 2B4V MSE A 198 MET SELENOMETHIONINE MODRES 2B4V MSE A 227 MET SELENOMETHIONINE MODRES 2B4V MSE A 240 MET SELENOMETHIONINE MODRES 2B4V MSE A 244 MET SELENOMETHIONINE MODRES 2B4V MSE A 261 MET SELENOMETHIONINE MODRES 2B4V MSE A 263 MET SELENOMETHIONINE MODRES 2B4V MSE A 297 MET SELENOMETHIONINE MODRES 2B4V MSE A 315 MET SELENOMETHIONINE MODRES 2B4V MSE A 324 MET SELENOMETHIONINE MODRES 2B4V MSE A 456 MET SELENOMETHIONINE HET MSE A 44 8 HET MSE A 56 8 HET MSE A 86 8 HET MSE A 92 8 HET MSE A 103 8 HET MSE A 198 8 HET MSE A 227 8 HET MSE A 240 8 HET MSE A 244 8 HET MSE A 261 8 HET MSE A 263 8 HET MSE A 297 8 HET MSE A 315 8 HET MSE A 324 8 HET MSE A 456 8 HET K A 1 1 HETNAM MSE SELENOMETHIONINE HETNAM K POTASSIUM ION FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 2 K K 1+ FORMUL 3 HOH *522(H2 O) HELIX 1 1 SER A 32 VAL A 51 1 20 HELIX 2 2 PRO A 53 THR A 75 1 23 HELIX 3 3 GLY A 84 GLY A 90 1 7 HELIX 4 4 SER A 110 ARG A 127 1 18 HELIX 5 5 PRO A 130 ASN A 135 1 6 HELIX 6 6 ASN A 154 THR A 164 1 11 HELIX 7 7 SER A 167 ARG A 175 1 9 HELIX 8 8 GLY A 187 GLY A 199 1 13 HELIX 9 9 SER A 223 GLY A 232 1 10 HELIX 10 10 THR A 241 GLU A 246 5 6 HELIX 11 11 PRO A 259 MSE A 263 5 5 HELIX 12 12 GLY A 272 GLY A 288 1 17 HELIX 13 13 ALA A 291 ALA A 305 1 15 HELIX 14 14 THR A 317 THR A 332 1 16 HELIX 15 15 ASP A 339 LEU A 343 5 5 HELIX 16 16 HIS A 345 LEU A 349 5 5 HELIX 17 17 ASP A 362 HIS A 380 1 19 HELIX 18 18 ARG A 398 GLY A 402 1 5 HELIX 19 19 PHE A 405 GLN A 407 5 3 HELIX 20 20 HIS A 438 PHE A 459 1 22 HELIX 21 21 LYS A 467 GLY A 471 5 5 SHEET 1 A 5 LYS A 79 CYS A 83 0 SHEET 2 A 5 LEU A 98 MSE A 103 -1 O MSE A 103 N LYS A 79 SHEET 3 A 5 TRP A 266 SER A 269 1 O SER A 269 N CYS A 102 SHEET 4 A 5 VAL A 147 LEU A 150 -1 N LEU A 150 O TRP A 266 SHEET 5 A 5 LEU A 137 LEU A 140 -1 N LEU A 138 O LYS A 149 SHEET 1 B 4 VAL A 203 ASP A 209 0 SHEET 2 B 4 GLY A 214 CYS A 221 -1 O ALA A 218 N ARG A 207 SHEET 3 B 4 THR A 176 ARG A 182 -1 N VAL A 181 O CYS A 215 SHEET 4 B 4 TYR A 248 VAL A 252 -1 O THR A 249 N ASP A 180 SHEET 1 C 2 GLU A 386 VAL A 387 0 SHEET 2 C 2 SER A 396 TYR A 397 -1 O SER A 396 N VAL A 387 SHEET 1 D 2 LYS A 409 LYS A 410 0 SHEET 2 D 2 PHE A 413 SER A 414 -1 O PHE A 413 N LYS A 410 LINK C ILE A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N ALA A 45 1555 1555 1.33 LINK C HIS A 55 N MSE A 56 1555 1555 1.34 LINK C MSE A 56 N PHE A 57 1555 1555 1.34 LINK C SER A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N VAL A 87 1555 1555 1.33 LINK C GLN A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N GLU A 93 1555 1555 1.33 LINK C CYS A 102 N MSE A 103 1555 1555 1.33 LINK C MSE A 103 N PHE A 104 1555 1555 1.33 LINK C LYS A 197 N MSE A 198 1555 1555 1.33 LINK C MSE A 198 N GLY A 199 1555 1555 1.33 LINK C GLN A 226 N MSE A 227 1555 1555 1.33 LINK C MSE A 227 N ILE A 228 1555 1555 1.34 LINK C ILE A 239 N MSE A 240 1555 1555 1.34 LINK C MSE A 240 N THR A 241 1555 1555 1.33 LINK C GLY A 243 N MSE A 244 1555 1555 1.33 LINK C MSE A 244 N ARG A 245 1555 1555 1.33 LINK C GLU A 260 N MSE A 261 1555 1555 1.33 LINK C MSE A 261 N PHE A 262 1555 1555 1.33 LINK C PHE A 262 N MSE A 263 1555 1555 1.33 LINK C MSE A 263 N TYR A 264 1555 1555 1.33 LINK C ALA A 296 N MSE A 297 1555 1555 1.33 LINK C MSE A 297 N ALA A 298 1555 1555 1.33 LINK C ALA A 314 N MSE A 315 1555 1555 1.33 LINK C MSE A 315 N LEU A 316 1555 1555 1.34 LINK C VAL A 323 N MSE A 324 1555 1555 1.33 LINK C MSE A 324 N PHE A 325 1555 1555 1.33 LINK C CYS A 455 N MSE A 456 1555 1555 1.33 LINK C MSE A 456 N GLU A 457 1555 1555 1.33 LINK K K A 1 O LEU A 285 1555 1555 2.84 LINK K K A 1 O HIS A 286 1555 1555 2.82 LINK K K A 1 O GLY A 288 1555 1555 2.90 LINK K K A 1 O PRO A 289 1555 1555 2.89 LINK K K A 1 O HOH A 516 1555 1555 2.75 LINK K K A 1 O HOH A 696 1555 1555 2.99 LINK K K A 1 O HOH A 701 1555 1555 2.68 CISPEP 1 PHE A 234 PRO A 235 0 -3.04 SITE 1 AC1 7 LEU A 285 HIS A 286 GLY A 288 PRO A 289 SITE 2 AC1 7 HOH A 516 HOH A 696 HOH A 701 CRYST1 91.573 91.573 163.283 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010920 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006124 0.00000