HEADER TRANSFERASE/RNA BINDING PROTEIN 27-SEP-05 2B51 TITLE STRUCTURAL BASIS FOR UTP SPECIFICITY OF RNA EDITING TUTASES FROM TITLE 2 TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA EDITING COMPLEX PROTEIN MP57; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: TBMP57; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PPROEX HTA KEYWDS RNA EDITING, TERMINAL URIDYLYL TRANSFERASE, TBRET2, EDITOSOME, KEYWDS 2 TRYPANOSOMA BRUCEI, TRANSFERASE-RNA BINDING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.DENG,N.L.ERNST,S.TURLEY,K.D.STUART,W.G.HOL REVDAT 6 14-FEB-24 2B51 1 REMARK REVDAT 5 20-OCT-21 2B51 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2B51 1 VERSN REVDAT 3 24-FEB-09 2B51 1 VERSN REVDAT 2 27-DEC-05 2B51 1 JRNL REVDAT 1 22-NOV-05 2B51 0 JRNL AUTH J.DENG,N.L.ERNST,S.TURLEY,K.D.STUART,W.G.HOL JRNL TITL STRUCTURAL BASIS FOR UTP SPECIFICITY OF RNA EDITING TUTASES JRNL TITL 2 FROM TRYPANOSOMA BRUCEI. JRNL REF EMBO J. V. 24 4007 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 16281058 JRNL DOI 10.1038/SJ.EMBOJ.7600861 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2198 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2973 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 325 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.885 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3760 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5117 ; 1.514 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ; 8.981 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;34.518 ;22.554 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 599 ;15.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;17.257 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 532 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2897 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1976 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2560 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 384 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2275 ; 0.765 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3567 ; 1.247 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1710 ; 1.933 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1549 ; 3.025 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 473 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1210 39.7870 13.1970 REMARK 3 T TENSOR REMARK 3 T11: -0.0762 T22: -0.2028 REMARK 3 T33: -0.0453 T12: -0.0052 REMARK 3 T13: 0.0122 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 2.1635 L22: 0.8234 REMARK 3 L33: 0.9916 L12: 0.1134 REMARK 3 L13: 0.1000 L23: 0.2730 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: 0.0643 S13: 0.1896 REMARK 3 S21: -0.0517 S22: 0.0067 S23: 0.0647 REMARK 3 S31: -0.0468 S32: -0.1316 S33: -0.0478 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B51 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43582 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 M KCL, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.08650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.50300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.50300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.54325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.50300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.50300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.62975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.50300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.50300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.54325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.50300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.50300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 121.62975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.08650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 20 REMARK 465 PRO A 21 REMARK 465 LEU A 22 REMARK 465 SER A 23 REMARK 465 LEU A 24 REMARK 465 PRO A 25 REMARK 465 SER A 26 REMARK 465 THR A 27 REMARK 465 LYS A 28 REMARK 465 LEU A 29 REMARK 465 ARG A 474 REMARK 465 ALA A 475 REMARK 465 ASP A 476 REMARK 465 LEU A 477 REMARK 465 ARG A 478 REMARK 465 HIS A 479 REMARK 465 PHE A 480 REMARK 465 GLU A 481 REMARK 465 ARG A 482 REMARK 465 ASP A 483 REMARK 465 ARG A 484 REMARK 465 ASP A 485 REMARK 465 ARG A 486 REMARK 465 GLU A 487 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 30 CG OD1 ND2 REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 ALA A 310 CB REMARK 470 VAL A 434 CB CG1 CG2 REMARK 470 LYS A 473 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 120 CE NZ REMARK 480 GLU A 156 CB CG CD OE1 OE2 REMARK 480 ARG A 242 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 104 -153.04 -116.47 REMARK 500 ASN A 183 -6.59 74.47 REMARK 500 ARG A 200 -125.54 55.29 REMARK 500 ASP A 201 -31.21 -33.88 REMARK 500 ASN A 307 -4.42 -59.10 REMARK 500 ALA A 310 -154.51 82.62 REMARK 500 SER A 312 48.63 -86.35 REMARK 500 HIS A 345 131.42 -35.36 REMARK 500 PRO A 346 -39.36 -39.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 199 ARG A 200 86.34 REMARK 500 TYR A 213 GLY A 214 -77.13 REMARK 500 GLY A 214 CYS A 215 123.91 REMARK 500 ASN A 307 VAL A 308 -138.46 REMARK 500 VAL A 308 GLY A 309 49.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 488 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 97 OD1 REMARK 620 2 ASP A 99 OD2 96.2 REMARK 620 3 UTP A 501 O1A 103.9 92.9 REMARK 620 4 UTP A 501 O1B 168.8 88.2 86.1 REMARK 620 5 UTP A 501 O3G 88.9 173.9 89.0 86.1 REMARK 620 6 HOH A 525 O 86.0 83.1 169.7 84.3 94.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 488 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B4V RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH UTP DBREF 2B51 A 20 487 UNP Q86MV5 Q86MV5_9TRYP 20 487 SEQADV 2B51 ARG A 94 UNP Q86MV5 TRP 94 ENGINEERED MUTATION SEQADV 2B51 ARG A 122 UNP Q86MV5 TRP 122 ENGINEERED MUTATION SEQADV 2B51 ARG A 207 UNP Q86MV5 TRP 207 ENGINEERED MUTATION SEQRES 1 A 468 SER PRO LEU SER LEU PRO SER THR LYS LEU ASN PRO SER SEQRES 2 A 468 PRO ASP HIS TYR ALA VAL TRP GLY LYS ALA ILE MET ALA SEQRES 3 A 468 GLU ASN ASN ARG ARG VAL GLY PRO GLU HIS MET PHE ARG SEQRES 4 A 468 THR ALA ILE ARG ALA GLN GLN GLN LEU GLN GLY LEU ALA SEQRES 5 A 468 ASP LYS TRP THR PRO ASP ALA LYS VAL TYR CYS CYS GLY SEQRES 6 A 468 SER MET VAL THR TYR GLY GLN MET GLU ARG GLY SER ASP SEQRES 7 A 468 LEU ASP LEU ALA CYS MET PHE ASP ASP PRO TYR PRO SER SEQRES 8 A 468 HIS GLU VAL GLN ALA LYS ARG THR ASP LYS LEU ARG THR SEQRES 9 A 468 VAL ILE LYS ARG TYR VAL PRO HIS TYR LEU ARG ASN ASN SEQRES 10 A 468 LEU LEU GLY LEU THR GLU ALA ARG THR PRO VAL VAL LYS SEQRES 11 A 468 LEU ARG PHE ALA ASN ASP GLU LYS VAL ALA ARG ALA ARG SEQRES 12 A 468 TYR THR PRO LEU SER GLU GLU GLU ASP ARG LYS ALA ARG SEQRES 13 A 468 THR ALA LEU LEU ASP VAL ARG ASN GLN CYS VAL GLY ASP SEQRES 14 A 468 ASN ASP VAL GLU TYR ILE ALA GLU LYS MET GLY ARG ASP SEQRES 15 A 468 ASN VAL GLU GLY ILE ARG VAL ASP ARG THR THR TYR GLY SEQRES 16 A 468 CYS ARG ILE ALA ILE GLN CYS THR SER LYS GLU GLN MET SEQRES 17 A 468 ILE GLU ALA ILE GLY PHE PHE PRO ASP GLY LYS ILE MET SEQRES 18 A 468 THR ARG GLY MET ARG GLU ASP TYR THR ARG ASP VAL LEU SEQRES 19 A 468 ASP VAL ARG PHE VAL PRO GLU MET PHE MET TYR ARG TRP SEQRES 20 A 468 ASP ILE SER PHE VAL GLY TYR GLY VAL LYS ASN SER TYR SEQRES 21 A 468 LEU ILE ARG HIS TYR LEU HIS ASN GLY PRO VAL ALA ALA SEQRES 22 A 468 ARG HIS THR ALA MET ALA VAL LYS ALA TRP GLY LYS ALA SEQRES 23 A 468 THR ASN VAL GLY ALA GLY SER GLY ALA MET LEU THR SER SEQRES 24 A 468 TYR ALA VAL THR VAL MET PHE ILE TYR TYR LEU LEU VAL SEQRES 25 A 468 THR ARG GLN VAL LEU TRP VAL ASP PRO TRP SER LEU PRO SEQRES 26 A 468 HIS PRO ALA HIS LEU PRO ARG TYR PRO ASP PHE SER PRO SEQRES 27 A 468 LEU TYR ASP CYS ASP PRO THR GLU LEU GLY ARG LEU LEU SEQRES 28 A 468 HIS GLY PHE PHE ILE PHE TYR ALA HIS HIS PHE ASP TYR SEQRES 29 A 468 GLU ARG GLU VAL VAL SER LEU ASN ARG ASN ARG ARG SER SEQRES 30 A 468 TYR ARG SER ASP ILE GLY TRP ASN PHE PRO GLN ASN LYS SEQRES 31 A 468 LYS GLY THR PHE SER TYR ASN PHE CYS ILE GLU ASP PRO SEQRES 32 A 468 TYR GLU ASP VAL GLY THR GLY GLY LEU ASN LEU VAL ARG SEQRES 33 A 468 HIS LEU HIS PRO ALA LYS PHE GLN LEU VAL LYS GLN GLU SEQRES 34 A 468 PHE LEU ARG ALA ALA GLN CYS MET GLU ARG PHE LEU PRO SEQRES 35 A 468 THR ASN ALA PRO GLU LYS SER ILE LEU GLY VAL LYS ARG SEQRES 36 A 468 ALA ASP LEU ARG HIS PHE GLU ARG ASP ARG ASP ARG GLU HET MN A 488 1 HET UTP A 501 29 HET UTP A 502 29 HET UTP A 503 29 HETNAM MN MANGANESE (II) ION HETNAM UTP URIDINE 5'-TRIPHOSPHATE FORMUL 2 MN MN 2+ FORMUL 3 UTP 3(C9 H15 N2 O15 P3) FORMUL 6 HOH *325(H2 O) HELIX 1 1 SER A 32 VAL A 51 1 20 HELIX 2 2 PRO A 53 THR A 75 1 23 HELIX 3 3 GLY A 84 GLY A 90 1 7 HELIX 4 4 SER A 110 ARG A 127 1 18 HELIX 5 5 PRO A 130 ASN A 135 1 6 HELIX 6 6 ASN A 154 THR A 164 1 11 HELIX 7 7 SER A 167 ARG A 175 1 9 HELIX 8 8 GLY A 187 GLY A 199 1 13 HELIX 9 9 SER A 223 GLY A 232 1 10 HELIX 10 10 THR A 241 GLU A 246 5 6 HELIX 11 11 PRO A 259 MET A 263 5 5 HELIX 12 12 GLY A 272 ASN A 287 1 16 HELIX 13 13 ALA A 291 ALA A 305 1 15 HELIX 14 14 THR A 317 THR A 332 1 16 HELIX 15 15 ASP A 339 LEU A 343 5 5 HELIX 16 16 HIS A 345 LEU A 349 5 5 HELIX 17 17 ASP A 362 HIS A 380 1 19 HELIX 18 18 ARG A 398 GLY A 402 1 5 HELIX 19 19 PHE A 405 GLN A 407 5 3 HELIX 20 20 HIS A 438 PHE A 459 1 22 HELIX 21 21 LYS A 467 GLY A 471 5 5 SHEET 1 A 5 LYS A 79 CYS A 83 0 SHEET 2 A 5 LEU A 98 MET A 103 -1 O MET A 103 N LYS A 79 SHEET 3 A 5 TRP A 266 SER A 269 1 O SER A 269 N CYS A 102 SHEET 4 A 5 VAL A 147 LEU A 150 -1 N VAL A 148 O ILE A 268 SHEET 5 A 5 LEU A 137 GLY A 139 -1 N LEU A 138 O LYS A 149 SHEET 1 B 4 VAL A 203 ASP A 209 0 SHEET 2 B 4 GLY A 214 CYS A 221 -1 O ALA A 218 N ARG A 207 SHEET 3 B 4 THR A 176 ARG A 182 -1 N VAL A 181 O CYS A 215 SHEET 4 B 4 TYR A 248 VAL A 252 -1 O THR A 249 N ASP A 180 SHEET 1 C 3 SER A 396 TYR A 397 0 SHEET 2 C 3 GLU A 386 SER A 389 -1 N VAL A 387 O SER A 396 SHEET 3 C 3 ILE A 419 GLU A 420 1 O GLU A 420 N VAL A 388 SHEET 1 D 2 LYS A 409 LYS A 410 0 SHEET 2 D 2 PHE A 413 SER A 414 -1 O PHE A 413 N LYS A 410 LINK OD1 ASP A 97 MN MN A 488 1555 1555 2.13 LINK OD2 ASP A 99 MN MN A 488 1555 1555 2.04 LINK MN MN A 488 O1A UTP A 501 1555 1555 2.20 LINK MN MN A 488 O1B UTP A 501 1555 1555 2.13 LINK MN MN A 488 O3G UTP A 501 1555 1555 2.11 LINK MN MN A 488 O HOH A 525 1555 1555 2.29 CISPEP 1 PHE A 234 PRO A 235 0 -2.31 CISPEP 2 ALA A 310 GLY A 311 0 -19.50 CISPEP 3 GLY A 311 SER A 312 0 -26.72 SITE 1 AC1 4 ASP A 97 ASP A 99 UTP A 501 HOH A 525 SITE 1 AC2 25 GLY A 84 SER A 85 SER A 96 ASP A 97 SITE 2 AC2 25 ASP A 99 GLY A 274 ASN A 277 SER A 278 SITE 3 AC2 25 LYS A 300 LYS A 304 SER A 318 TYR A 319 SITE 4 AC2 25 MN A 488 HOH A 518 HOH A 519 HOH A 520 SITE 5 AC2 25 HOH A 521 HOH A 525 HOH A 529 HOH A 542 SITE 6 AC2 25 HOH A 557 HOH A 567 HOH A 606 HOH A 659 SITE 7 AC2 25 HOH A 828 SITE 1 AC3 15 ARG A 144 SER A 312 GLY A 313 ALA A 314 SITE 2 AC3 15 MET A 315 THR A 317 PHE A 413 ARG A 435 SITE 3 AC3 15 HIS A 436 HOH A 539 HOH A 549 HOH A 578 SITE 4 AC3 15 HOH A 743 HOH A 755 HOH A 803 SITE 1 AC4 10 ARG A 282 HIS A 283 ASN A 287 PRO A 350 SITE 2 AC4 10 TYR A 352 PRO A 353 ASP A 354 HOH A 666 SITE 3 AC4 10 HOH A 777 HOH A 780 CRYST1 91.006 91.006 162.173 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010988 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006166 0.00000