HEADER HYDROLASE 28-SEP-05 2B5D TITLE CRYSTAL STRUCTURE OF THE NOVEL ALPHA-AMYLASE AMYC FROM THERMOTOGA TITLE 2 MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-AMYLASE; COMPND 3 CHAIN: X; COMPND 4 EC: 3.2.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM1438; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24C KEYWDS (BETA/ALPHA)7 BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DICKMANNS,M.BALLSCHMITER,W.LIEBL,R.FICNER REVDAT 4 13-MAR-24 2B5D 1 REMARK REVDAT 3 13-JUL-11 2B5D 1 VERSN REVDAT 2 24-FEB-09 2B5D 1 VERSN REVDAT 1 07-MAR-06 2B5D 0 JRNL AUTH A.DICKMANNS,M.BALLSCHMITER,W.LIEBL,R.FICNER JRNL TITL STRUCTURE OF THE NOVEL ALPHA-AMYLASE AMYC FROM THERMOTOGA JRNL TITL 2 MARITIMA. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 262 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 16510973 JRNL DOI 10.1107/S0907444905041363 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0013 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 47176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2512 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2225 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.99000 REMARK 3 B22 (A**2) : 1.99000 REMARK 3 B33 (A**2) : -3.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.205 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.646 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4465 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6031 ; 1.698 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 516 ; 7.406 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 239 ;39.175 ;23.389 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 783 ;20.253 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;20.493 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 615 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3457 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2234 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2997 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 286 ; 0.228 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2674 ; 1.082 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4168 ; 1.809 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2098 ; 2.341 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1863 ; 3.497 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2B5D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12710, 0.97972, 0.97997, REMARK 200 0.98393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50618 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M NA-FORMIATE, 5% ISOPROPANOL, 2MM REMARK 280 DTT, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 56.08200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 56.08200 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 167.77200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.08200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.88600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.08200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 251.65800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.08200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 251.65800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.08200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.88600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 56.08200 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 56.08200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 167.77200 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 56.08200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 56.08200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 167.77200 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 56.08200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 251.65800 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 56.08200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 83.88600 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.08200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 83.88600 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 56.08200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 251.65800 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 56.08200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 56.08200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 167.77200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -56.08200 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 56.08200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 167.77200 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 112.16400 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 56.08200 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 56.08200 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 167.77200 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 112.16400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY X 405 REMARK 465 GLY X 406 REMARK 465 TYR X 407 REMARK 465 TYR X 408 REMARK 465 GLU X 409 REMARK 465 THR X 410 REMARK 465 TRP X 411 REMARK 465 LEU X 412 REMARK 465 ASN X 413 REMARK 465 GLY X 414 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR X 415 OG1 CG2 REMARK 470 PHE X 466 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE X 467 CB CG1 CG2 CD1 REMARK 470 THR X 469 CB OG1 CG2 REMARK 470 ARG X 471 CB CG CD NE CZ NH1 NH2 REMARK 470 THR X 472 CB OG1 CG2 REMARK 470 SER X 473 CB OG REMARK 470 VAL X 474 CB CG1 CG2 REMARK 470 GLN X 475 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG X 454 N PHE X 515 1.50 REMARK 500 OE2 GLU X 63 O ILE X 514 1.74 REMARK 500 NH2 ARG X 179 OE2 GLU X 202 1.83 REMARK 500 O HOH X 595 O HOH X 630 1.99 REMARK 500 OD1 ASP X 207 NH2 ARG X 237 2.03 REMARK 500 NE ARG X 179 O HOH X 709 2.08 REMARK 500 O LEU X 377 O HOH X 529 2.09 REMARK 500 O HOH X 569 O HOH X 656 2.12 REMARK 500 NH1 ARG X 179 O HOH X 709 2.12 REMARK 500 O HOH X 529 O HOH X 619 2.13 REMARK 500 NH2 ARG X 454 C ILE X 514 2.18 REMARK 500 O HIS X 17 O HOH X 665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 237 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 MET X 338 CG - SD - CE ANGL. DEV. = -9.9 DEGREES REMARK 500 ARG X 525 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS X 186 27.75 44.65 REMARK 500 TYR X 262 35.63 -93.23 REMARK 500 ASP X 276 35.34 -96.56 REMARK 500 THR X 295 -48.98 77.79 REMARK 500 HIS X 355 -66.27 -103.18 REMARK 500 SER X 461 124.97 -34.69 REMARK 500 PHE X 466 72.54 -152.02 REMARK 500 MET X 468 47.82 -109.42 REMARK 500 THR X 470 -84.61 -60.91 REMARK 500 THR X 472 -60.73 -98.76 REMARK 500 SER X 473 121.67 63.33 REMARK 500 VAL X 474 72.92 -49.98 REMARK 500 GLN X 475 -67.87 -159.17 REMARK 500 ARG X 499 51.04 -102.65 REMARK 500 ASP X 512 72.38 -108.09 REMARK 500 ILE X 514 -70.20 -32.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP X 402 GLY X 403 -147.72 REMARK 500 VAL X 527 ILE X 528 139.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UFA RELATED DB: PDB REMARK 900 PUTATIVE ORTHOLOGUE FROM THERMUS THERMOPHILUS DBREF 2B5D X 1 528 PDB 2B5D 2B5D 1 528 SEQRES 1 X 528 MET ARG GLY LYS ILE LEU ILE PHE LEU HIS ALA HIS LEU SEQRES 2 X 528 PRO TYR VAL HIS HIS PRO GLU TYR ASP HIS PHE LEU GLU SEQRES 3 X 528 GLU ARG TRP LEU PHE GLU ALA ILE THR GLU THR TYR ILE SEQRES 4 X 528 PRO LEU LEU MET MET PHE ASP GLU ILE GLU ASP PHE ARG SEQRES 5 X 528 LEU THR MET SER ILE THR PRO PRO LEU MET GLU MET LEU SEQRES 6 X 528 SER SER ARG ASP LEU GLN GLU LYS TYR GLU ARG HIS MET SEQRES 7 X 528 GLU LYS LEU ILE GLU LEU ALA ASN LYS GLU VAL GLU ARG SEQRES 8 X 528 THR LYS LYS GLU HIS PRO LEU LYS HIS LYS MET ALA LYS SEQRES 9 X 528 PHE TYR ARG GLU HIS PHE GLU LYS ILE LEU ASN VAL PHE SEQRES 10 X 528 ARG SER TYR ASP GLY ASN ILE LEU GLU GLY PHE LYS LYS SEQRES 11 X 528 TYR GLN GLU THR GLY LYS LEU GLU ILE VAL THR CYS ASN SEQRES 12 X 528 ALA THR HIS ALA PHE LEU PRO LEU TYR GLN MET TYR PRO SEQRES 13 X 528 GLU VAL VAL ASN ALA GLN ILE THR VAL GLY VAL LYS ASN SEQRES 14 X 528 TYR GLU LYS HIS MET LYS LYS HIS PRO ARG GLY ILE TRP SEQRES 15 X 528 LEU ALA GLU CYS GLY TYR TYR GLN GLY LEU ASP LEU TYR SEQRES 16 X 528 LEU ALA GLN ASN ASN VAL GLU TYR PHE PHE VAL ASP SER SEQRES 17 X 528 HIS ALA PHE TRP PHE ALA ASP GLU GLN PRO ARG TYR GLY SEQRES 18 X 528 VAL TYR ARG PRO ILE MET THR PRO SER GLY VAL PHE ALA SEQRES 19 X 528 PHE ALA ARG ASP PRO GLU SER SER GLU GLN VAL TRP SER SEQRES 20 X 528 ALA ALA VAL GLY TYR PRO GLY ASP PRO ARG TYR ARG GLU SEQRES 21 X 528 PHE TYR ARG ASP ILE GLY PHE ASP ARG GLU MET GLU TYR SEQRES 22 X 528 ILE LYS ASP TYR ILE ASP PRO SER GLY VAL ARG ILE ASN SEQRES 23 X 528 THR GLY ILE LYS TYR HIS ARG ILE THR SER LYS SER LEU SEQRES 24 X 528 ASP ALA SER GLN LYS GLU TYR TYR ASP ILE ASP LEU ALA SEQRES 25 X 528 MET GLU ALA VAL GLU GLU HIS ALA ARG ASP PHE LEU HIS SEQRES 26 X 528 LYS LYS GLU SER GLN ALA ARG ARG LEU MET ASP ILE MET SEQRES 27 X 528 GLY VAL GLU PRO VAL ILE VAL ALA PRO PHE ASP ALA GLU SEQRES 28 X 528 LEU PHE GLY HIS TRP TRP PHE GLU GLY VAL PHE PHE LEU SEQRES 29 X 528 LYS ARG PHE PHE GLU LEU VAL ASN GLU SER LYS ASP LEU SEQRES 30 X 528 LYS LEU VAL THR ALA SER GLU VAL ILE ASP THR LEU GLU SEQRES 31 X 528 GLU VAL GLN ILE ALA THR PRO ALA ASP SER SER TRP GLY SEQRES 32 X 528 ALA GLY GLY TYR TYR GLU THR TRP LEU ASN GLY THR ASN SEQRES 33 X 528 ASP TRP ILE TYR ARG HIS LEU HIS GLU MET ILE GLU ARG SEQRES 34 X 528 MET ILE ASP LEU SER LYS LYS TYR TYR ASN SER SER ASP SEQRES 35 X 528 PRO LEU VAL GLU ARG VAL LEU ASN GLN MET LEU ARG GLU SEQRES 36 X 528 LEU PHE LEU ALA GLN SER SER ASP TRP ALA PHE ILE MET SEQRES 37 X 528 THR THR ARG THR SER VAL GLN TYR ALA GLU ASN ARG THR SEQRES 38 X 528 LYS LEU HIS ILE LYS ARG PHE LEU ASN LEU TYR ASP GLN SEQRES 39 X 528 LEU VAL SER GLY ARG ILE ASP GLU GLU MET LEU ARG TYR SEQRES 40 X 528 TYR GLU TRP THR ASP ALA ILE PHE PRO GLU ILE ASN PHE SEQRES 41 X 528 ARG VAL MET ALA ARG ASP VAL ILE FORMUL 2 HOH *317(H2 O) HELIX 1 1 GLU X 26 THR X 37 1 12 HELIX 2 2 THR X 37 ILE X 48 1 12 HELIX 3 3 THR X 58 SER X 67 1 10 HELIX 4 4 SER X 67 THR X 92 1 26 HELIX 5 5 HIS X 96 TYR X 120 1 25 HELIX 6 6 ILE X 124 GLY X 135 1 12 HELIX 7 7 PHE X 148 GLN X 153 5 6 HELIX 8 8 TYR X 155 LYS X 175 1 21 HELIX 9 9 LEU X 183 GLY X 187 5 5 HELIX 10 10 GLY X 191 ASN X 199 1 9 HELIX 11 11 SER X 208 PHE X 213 1 6 HELIX 12 12 TYR X 220 ARG X 224 5 5 HELIX 13 13 ASP X 238 SER X 247 5 10 HELIX 14 14 GLY X 251 ASP X 255 5 5 HELIX 15 15 ASP X 264 ARG X 269 1 6 HELIX 16 16 GLU X 270 LYS X 275 1 6 HELIX 17 17 ASP X 276 ILE X 278 5 3 HELIX 18 18 ASP X 300 LYS X 304 5 5 HELIX 19 19 ASP X 308 GLY X 339 1 32 HELIX 20 20 GLU X 351 PHE X 353 5 3 HELIX 21 21 GLU X 359 SER X 374 1 16 HELIX 22 22 THR X 381 LEU X 389 1 9 HELIX 23 23 ASP X 417 TYR X 437 1 21 HELIX 24 24 ASP X 442 ALA X 459 1 18 HELIX 25 25 GLN X 460 ALA X 465 5 6 HELIX 26 26 GLN X 475 SER X 497 1 23 HELIX 27 27 ASP X 501 ASP X 512 1 12 HELIX 28 28 ASN X 519 ARG X 525 5 7 SHEET 1 A 8 ILE X 226 MET X 227 0 SHEET 2 A 8 PHE X 233 ALA X 236 -1 O ALA X 234 N ILE X 226 SHEET 3 A 8 TYR X 203 VAL X 206 1 N VAL X 206 O PHE X 235 SHEET 4 A 8 GLY X 180 TRP X 182 1 N ILE X 181 O TYR X 203 SHEET 5 A 8 LEU X 137 CYS X 142 1 N THR X 141 O TRP X 182 SHEET 6 A 8 LEU X 53 ILE X 57 1 N MET X 55 O GLU X 138 SHEET 7 A 8 GLY X 3 ALA X 11 1 N LEU X 9 O THR X 54 SHEET 8 A 8 VAL X 343 ASP X 349 1 O PHE X 348 N PHE X 8 SHEET 1 B 8 ILE X 226 MET X 227 0 SHEET 2 B 8 PHE X 233 ALA X 236 -1 O ALA X 234 N ILE X 226 SHEET 3 B 8 TYR X 203 VAL X 206 1 N VAL X 206 O PHE X 235 SHEET 4 B 8 GLY X 180 TRP X 182 1 N ILE X 181 O TYR X 203 SHEET 5 B 8 LEU X 137 CYS X 142 1 N THR X 141 O TRP X 182 SHEET 6 B 8 LEU X 53 ILE X 57 1 N MET X 55 O GLU X 138 SHEET 7 B 8 GLY X 3 ALA X 11 1 N LEU X 9 O THR X 54 SHEET 8 B 8 LEU X 377 LEU X 379 1 O LYS X 378 N ILE X 5 CRYST1 112.164 112.164 335.544 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008916 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008916 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002980 0.00000