HEADER LYASE 30-SEP-05 2B69 TITLE CRYSTAL STRUCTURE OF HUMAN UDP-GLUCORONIC ACID DECARBOXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCURONATE DECARBOXYLASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UXS1; COMPND 5 EC: 4.1.1.35; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UXS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 (DE3) METHIONINE AUXOTROPH; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: P11 KEYWDS UDP-GLUCORONIC ACID DECARBOXYLASE, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,E.DUBININA,K.KAVANAGH,M.SUNDSTROM,J.WEIGELT,A.EDWARDS, AUTHOR 2 C.ARROWSMITH,F.VON DELFT,U.OPPERMANN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 4 20-NOV-24 2B69 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2B69 1 VERSN REVDAT 2 24-FEB-09 2B69 1 VERSN REVDAT 1 18-OCT-05 2B69 0 JRNL AUTH E.UGOCHUKWU,E.DUBININA,K.KAVANAGH,M.SUNDSTROM,J.WEIGELT, JRNL AUTH 2 A.EDWARDS,C.ARROWSMITH,F.VON DELFT,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF HUMAN UDP-GLUCORONIC ACID DECARBOXYLASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 3 NUMBER OF REFLECTIONS : 84968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4473 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1604 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 21.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.039 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.333 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2675 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2374 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3667 ; 1.506 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5545 ; 0.877 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 336 ; 5.668 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;33.702 ;24.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 439 ;11.353 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.234 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 404 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2953 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 512 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 367 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2040 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1192 ; 0.163 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1157 ; 0.076 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 177 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.300 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 38 ; 0.210 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.284 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1910 ; 3.841 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 648 ; 2.356 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2584 ; 3.951 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1211 ; 5.245 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1070 ; 6.620 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5826 ; 2.682 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 353 ; 7.810 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4973 ; 4.290 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2B69 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93023 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 42.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, ZN (AC)2, PH 4.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 81.64111 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 84.36642 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 ARG A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 465 MSE A 0 REMARK 465 GLU A 1 REMARK 465 LYS A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 316 REMARK 465 ASN A 317 REMARK 465 GLN A 318 REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 5 CE NZ REMARK 470 LYS A 42 NZ REMARK 470 GLU A 52 CD OE1 OE2 REMARK 470 LYS A 90 CE NZ REMARK 470 LYS A 163 CD CE NZ REMARK 470 TYR A 313 CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 314 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 265 O HOH A 1249 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1083 O HOH A 1083 2755 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 77 145.18 -176.21 REMARK 500 THR A 96 -68.46 -95.20 REMARK 500 PRO A 129 -176.02 -64.21 REMARK 500 ARG A 181 -2.43 92.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 901 DBREF 2B69 A 1 318 UNP Q8NBZ7 UXS1_HUMAN 85 402 SEQADV 2B69 MSE A -22 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 GLY A -21 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 SER A -20 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 SER A -19 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 HIS A -18 UNP Q8NBZ7 EXPRESSION TAG SEQADV 2B69 HIS A -17 UNP Q8NBZ7 EXPRESSION TAG SEQADV 2B69 HIS A -16 UNP Q8NBZ7 EXPRESSION TAG SEQADV 2B69 HIS A -15 UNP Q8NBZ7 EXPRESSION TAG SEQADV 2B69 HIS A -14 UNP Q8NBZ7 EXPRESSION TAG SEQADV 2B69 HIS A -13 UNP Q8NBZ7 EXPRESSION TAG SEQADV 2B69 SER A -12 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 SER A -11 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 GLY A -10 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 ARG A -9 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 GLU A -8 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 ASN A -7 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 LEU A -6 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 TYR A -5 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 PHE A -4 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 GLN A -3 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 GLY A -2 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 HIS A -1 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 MSE A 0 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 MSE A 25 UNP Q8NBZ7 MET 109 MODIFIED RESIDUE SEQADV 2B69 MSE A 26 UNP Q8NBZ7 MET 110 MODIFIED RESIDUE SEQADV 2B69 MSE A 85 UNP Q8NBZ7 MET 169 MODIFIED RESIDUE SEQADV 2B69 MSE A 102 UNP Q8NBZ7 MET 186 MODIFIED RESIDUE SEQADV 2B69 MSE A 157 UNP Q8NBZ7 MET 241 MODIFIED RESIDUE SEQADV 2B69 MSE A 162 UNP Q8NBZ7 MET 246 MODIFIED RESIDUE SEQADV 2B69 MSE A 182 UNP Q8NBZ7 MET 266 MODIFIED RESIDUE SEQADV 2B69 MSE A 184 UNP Q8NBZ7 MET 268 MODIFIED RESIDUE SEQADV 2B69 MSE A 229 UNP Q8NBZ7 MET 313 MODIFIED RESIDUE SEQADV 2B69 MSE A 287 UNP Q8NBZ7 MET 371 MODIFIED RESIDUE SEQADV 2B69 GLY A 319 UNP Q8NBZ7 CLONING ARTIFACT SEQADV 2B69 SER A 320 UNP Q8NBZ7 CLONING ARTIFACT SEQRES 1 A 343 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 343 ARG GLU ASN LEU TYR PHE GLN GLY HIS MSE GLU LYS ASP SEQRES 3 A 343 ARG LYS ARG ILE LEU ILE THR GLY GLY ALA GLY PHE VAL SEQRES 4 A 343 GLY SER HIS LEU THR ASP LYS LEU MSE MSE ASP GLY HIS SEQRES 5 A 343 GLU VAL THR VAL VAL ASP ASN PHE PHE THR GLY ARG LYS SEQRES 6 A 343 ARG ASN VAL GLU HIS TRP ILE GLY HIS GLU ASN PHE GLU SEQRES 7 A 343 LEU ILE ASN HIS ASP VAL VAL GLU PRO LEU TYR ILE GLU SEQRES 8 A 343 VAL ASP GLN ILE TYR HIS LEU ALA SER PRO ALA SER PRO SEQRES 9 A 343 PRO ASN TYR MSE TYR ASN PRO ILE LYS THR LEU LYS THR SEQRES 10 A 343 ASN THR ILE GLY THR LEU ASN MSE LEU GLY LEU ALA LYS SEQRES 11 A 343 ARG VAL GLY ALA ARG LEU LEU LEU ALA SER THR SER GLU SEQRES 12 A 343 VAL TYR GLY ASP PRO GLU VAL HIS PRO GLN SER GLU ASP SEQRES 13 A 343 TYR TRP GLY HIS VAL ASN PRO ILE GLY PRO ARG ALA CYS SEQRES 14 A 343 TYR ASP GLU GLY LYS ARG VAL ALA GLU THR MSE CYS TYR SEQRES 15 A 343 ALA TYR MSE LYS GLN GLU GLY VAL GLU VAL ARG VAL ALA SEQRES 16 A 343 ARG ILE PHE ASN THR PHE GLY PRO ARG MSE HIS MSE ASN SEQRES 17 A 343 ASP GLY ARG VAL VAL SER ASN PHE ILE LEU GLN ALA LEU SEQRES 18 A 343 GLN GLY GLU PRO LEU THR VAL TYR GLY SER GLY SER GLN SEQRES 19 A 343 THR ARG ALA PHE GLN TYR VAL SER ASP LEU VAL ASN GLY SEQRES 20 A 343 LEU VAL ALA LEU MSE ASN SER ASN VAL SER SER PRO VAL SEQRES 21 A 343 ASN LEU GLY ASN PRO GLU GLU HIS THR ILE LEU GLU PHE SEQRES 22 A 343 ALA GLN LEU ILE LYS ASN LEU VAL GLY SER GLY SER GLU SEQRES 23 A 343 ILE GLN PHE LEU SER GLU ALA GLN ASP ASP PRO GLN LYS SEQRES 24 A 343 ARG LYS PRO ASP ILE LYS LYS ALA LYS LEU MSE LEU GLY SEQRES 25 A 343 TRP GLU PRO VAL VAL PRO LEU GLU GLU GLY LEU ASN LYS SEQRES 26 A 343 ALA ILE HIS TYR PHE ARG LYS GLU LEU GLU TYR GLN ALA SEQRES 27 A 343 ASN ASN GLN GLY SER MODRES 2B69 MSE A 25 MET SELENOMETHIONINE MODRES 2B69 MSE A 26 MET SELENOMETHIONINE MODRES 2B69 MSE A 85 MET SELENOMETHIONINE MODRES 2B69 MSE A 102 MET SELENOMETHIONINE MODRES 2B69 MSE A 157 MET SELENOMETHIONINE MODRES 2B69 MSE A 162 MET SELENOMETHIONINE MODRES 2B69 MSE A 182 MET SELENOMETHIONINE MODRES 2B69 MSE A 184 MET SELENOMETHIONINE MODRES 2B69 MSE A 229 MET SELENOMETHIONINE MODRES 2B69 MSE A 287 MET SELENOMETHIONINE HET MSE A 25 8 HET MSE A 26 8 HET MSE A 85 8 HET MSE A 102 8 HET MSE A 157 8 HET MSE A 162 8 HET MSE A 182 13 HET MSE A 184 8 HET MSE A 229 8 HET MSE A 287 13 HET NAD A 800 44 HET UDP A 900 25 HET UDP A 901 25 HETNAM MSE SELENOMETHIONINE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 5 HOH *353(H2 O) HELIX 1 1 GLY A 14 ASP A 27 1 14 HELIX 2 2 ARG A 41 ILE A 49 5 9 HELIX 3 3 SER A 80 MSE A 85 1 6 HELIX 4 4 ASN A 87 GLY A 110 1 24 HELIX 5 5 GLU A 120 GLY A 123 5 4 HELIX 6 6 ARG A 144 GLY A 166 1 23 HELIX 7 7 ARG A 188 GLY A 200 1 13 HELIX 8 8 VAL A 218 ASN A 230 1 13 HELIX 9 9 ILE A 247 GLY A 259 1 13 HELIX 10 10 ILE A 281 GLY A 289 1 9 HELIX 11 11 PRO A 295 ALA A 315 1 21 SHEET 1 A 7 PHE A 54 ASN A 58 0 SHEET 2 A 7 GLU A 30 ASP A 35 1 N VAL A 33 O ILE A 57 SHEET 3 A 7 ARG A 6 THR A 10 1 N ILE A 7 O GLU A 30 SHEET 4 A 7 GLN A 71 HIS A 74 1 O TYR A 73 N LEU A 8 SHEET 5 A 7 ARG A 112 THR A 118 1 O LEU A 114 N HIS A 74 SHEET 6 A 7 VAL A 169 ILE A 174 1 O ARG A 170 N LEU A 115 SHEET 7 A 7 VAL A 237 LEU A 239 1 O LEU A 239 N ARG A 173 SHEET 1 B 2 THR A 177 PHE A 178 0 SHEET 2 B 2 GLN A 216 TYR A 217 1 O GLN A 216 N PHE A 178 SHEET 1 C 2 LEU A 203 TYR A 206 0 SHEET 2 C 2 ILE A 264 LEU A 267 1 O LEU A 267 N VAL A 205 SHEET 1 D 2 THR A 212 ALA A 214 0 SHEET 2 D 2 GLU A 244 THR A 246 -1 O HIS A 245 N ARG A 213 LINK C LEU A 24 N MSE A 25 1555 1555 1.33 LINK C MSE A 25 N MSE A 26 1555 1555 1.33 LINK C MSE A 26 N ASP A 27 1555 1555 1.34 LINK C TYR A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N TYR A 86 1555 1555 1.34 LINK C ASN A 101 N MSE A 102 1555 1555 1.33 LINK C MSE A 102 N LEU A 103 1555 1555 1.34 LINK C THR A 156 N MSE A 157 1555 1555 1.33 LINK C MSE A 157 N CYS A 158 1555 1555 1.33 LINK C TYR A 161 N MSE A 162 1555 1555 1.33 LINK C MSE A 162 N LYS A 163 1555 1555 1.33 LINK C ARG A 181 N MSE A 182 1555 1555 1.34 LINK C MSE A 182 N HIS A 183 1555 1555 1.34 LINK C HIS A 183 N MSE A 184 1555 1555 1.34 LINK C MSE A 184 N ASN A 185 1555 1555 1.33 LINK C LEU A 228 N MSE A 229 1555 1555 1.33 LINK C MSE A 229 N ASN A 230 1555 1555 1.33 LINK C LEU A 286 N MSE A 287 1555 1555 1.34 LINK C MSE A 287 N LEU A 288 1555 1555 1.34 CISPEP 1 HIS A 128 PRO A 129 0 -14.71 SITE 1 AC1 32 GLY A 11 ALA A 13 GLY A 14 PHE A 15 SITE 2 AC1 32 VAL A 16 ASP A 35 ASN A 36 PHE A 37 SITE 3 AC1 32 PHE A 38 THR A 39 GLY A 40 HIS A 59 SITE 4 AC1 32 ASP A 60 VAL A 61 LEU A 75 ALA A 76 SITE 5 AC1 32 SER A 77 ALA A 79 THR A 94 SER A 117 SITE 6 AC1 32 THR A 118 TYR A 147 LYS A 151 ILE A 174 SITE 7 AC1 32 ASN A 176 THR A 177 ARG A 188 HOH A 905 SITE 8 AC1 32 HOH A 922 HOH A 925 HOH A 969 HOH A 999 SITE 1 AC2 19 PRO A 81 ARG A 144 ASN A 176 ARG A 188 SITE 2 AC2 19 VAL A 189 ASN A 192 THR A 204 VAL A 205 SITE 3 AC2 19 TYR A 206 GLN A 211 ARG A 213 ILE A 247 SITE 4 AC2 19 ASP A 273 ARG A 277 HOH A 934 HOH A 940 SITE 5 AC2 19 HOH A 942 HOH A 980 HOH A1029 SITE 1 AC3 15 PRO A 64 LEU A 65 TYR A 66 LEU A 100 SITE 2 AC3 15 ASN A 101 GLY A 104 LEU A 105 LYS A 107 SITE 3 AC3 15 ARG A 108 TYR A 161 HOH A 918 HOH A 929 SITE 4 AC3 15 HOH A 981 HOH A 985 HOH A1183 CRYST1 46.000 45.000 85.000 90.00 97.00 90.00 P 1 2 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021739 0.000000 0.002669 0.00000 SCALE2 0.000000 0.022222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011853 0.00000 CONECT 144 150 CONECT 150 144 151 CONECT 151 150 152 154 CONECT 152 151 153 158 CONECT 153 152 CONECT 154 151 155 CONECT 155 154 156 CONECT 156 155 157 CONECT 157 156 CONECT 158 152 159 CONECT 159 158 160 162 CONECT 160 159 161 166 CONECT 161 160 CONECT 162 159 163 CONECT 163 162 164 CONECT 164 163 165 CONECT 165 164 CONECT 166 160 CONECT 635 645 CONECT 645 635 646 CONECT 646 645 647 649 CONECT 647 646 648 653 CONECT 648 647 CONECT 649 646 650 CONECT 650 649 651 CONECT 651 650 652 CONECT 652 651 CONECT 653 647 CONECT 775 781 CONECT 781 775 782 CONECT 782 781 783 785 CONECT 783 782 784 789 CONECT 784 783 CONECT 785 782 786 CONECT 786 785 787 CONECT 787 786 788 CONECT 788 787 CONECT 789 783 CONECT 1209 1214 CONECT 1214 1209 1215 CONECT 1215 1214 1216 1218 CONECT 1216 1215 1217 1222 CONECT 1217 1216 CONECT 1218 1215 1219 CONECT 1219 1218 1220 CONECT 1220 1219 1221 CONECT 1221 1220 CONECT 1222 1216 CONECT 1247 1257 CONECT 1257 1247 1258 CONECT 1258 1257 1259 1261 CONECT 1259 1258 1260 1265 CONECT 1260 1259 CONECT 1261 1258 1262 CONECT 1262 1261 1263 CONECT 1263 1262 1264 CONECT 1264 1263 CONECT 1265 1259 CONECT 1417 1426 CONECT 1426 1417 1427 1428 CONECT 1427 1426 1429 1431 CONECT 1428 1426 1429 1432 CONECT 1429 1427 1428 1430 1439 CONECT 1430 1429 CONECT 1431 1427 1433 CONECT 1432 1428 1434 CONECT 1433 1431 1435 CONECT 1434 1432 1436 CONECT 1435 1433 1437 CONECT 1436 1434 1438 CONECT 1437 1435 CONECT 1438 1436 CONECT 1439 1429 CONECT 1441 1449 CONECT 1449 1441 1450 CONECT 1450 1449 1451 1453 CONECT 1451 1450 1452 1457 CONECT 1452 1451 CONECT 1453 1450 1454 CONECT 1454 1453 1455 CONECT 1455 1454 1456 CONECT 1456 1455 CONECT 1457 1451 CONECT 1788 1794 CONECT 1794 1788 1795 CONECT 1795 1794 1796 1798 CONECT 1796 1795 1797 1802 CONECT 1797 1796 CONECT 1798 1795 1799 CONECT 1799 1798 1800 CONECT 1800 1799 1801 CONECT 1801 1800 CONECT 1802 1796 CONECT 2253 2259 CONECT 2259 2253 2260 2261 CONECT 2260 2259 2262 2264 CONECT 2261 2259 2262 2265 CONECT 2262 2260 2261 2263 2272 CONECT 2263 2262 CONECT 2264 2260 2266 CONECT 2265 2261 2267 CONECT 2266 2264 2268 CONECT 2267 2265 2269 CONECT 2268 2266 2270 CONECT 2269 2267 2271 CONECT 2270 2268 CONECT 2271 2269 CONECT 2272 2262 CONECT 2507 2508 2509 2510 2529 CONECT 2508 2507 CONECT 2509 2507 CONECT 2510 2507 2511 CONECT 2511 2510 2512 CONECT 2512 2511 2513 2514 CONECT 2513 2512 2518 CONECT 2514 2512 2515 2516 CONECT 2515 2514 CONECT 2516 2514 2517 2518 CONECT 2517 2516 CONECT 2518 2513 2516 2519 CONECT 2519 2518 2520 2528 CONECT 2520 2519 2521 CONECT 2521 2520 2522 CONECT 2522 2521 2523 2528 CONECT 2523 2522 2524 2525 CONECT 2524 2523 CONECT 2525 2523 2526 CONECT 2526 2525 2527 CONECT 2527 2526 2528 CONECT 2528 2519 2522 2527 CONECT 2529 2507 2530 CONECT 2530 2529 2531 2532 2533 CONECT 2531 2530 CONECT 2532 2530 CONECT 2533 2530 2534 CONECT 2534 2533 2535 CONECT 2535 2534 2536 2537 CONECT 2536 2535 2541 CONECT 2537 2535 2538 2539 CONECT 2538 2537 CONECT 2539 2537 2540 2541 CONECT 2540 2539 CONECT 2541 2536 2539 2542 CONECT 2542 2541 2543 2550 CONECT 2543 2542 2544 CONECT 2544 2543 2545 2548 CONECT 2545 2544 2546 2547 CONECT 2546 2545 CONECT 2547 2545 CONECT 2548 2544 2549 CONECT 2549 2548 2550 CONECT 2550 2542 2549 CONECT 2551 2552 2556 2559 CONECT 2552 2551 2553 2557 CONECT 2553 2552 2554 CONECT 2554 2553 2555 2558 CONECT 2555 2554 2556 CONECT 2556 2551 2555 CONECT 2557 2552 CONECT 2558 2554 CONECT 2559 2551 2560 2564 CONECT 2560 2559 2561 2562 CONECT 2561 2560 CONECT 2562 2560 2563 2565 CONECT 2563 2562 2564 2566 CONECT 2564 2559 2563 CONECT 2565 2562 CONECT 2566 2563 2567 CONECT 2567 2566 2568 CONECT 2568 2567 2569 2570 2571 CONECT 2569 2568 CONECT 2570 2568 CONECT 2571 2568 2572 CONECT 2572 2571 2573 2574 2575 CONECT 2573 2572 CONECT 2574 2572 CONECT 2575 2572 CONECT 2576 2577 2581 2584 CONECT 2577 2576 2578 2582 CONECT 2578 2577 2579 CONECT 2579 2578 2580 2583 CONECT 2580 2579 2581 CONECT 2581 2576 2580 CONECT 2582 2577 CONECT 2583 2579 CONECT 2584 2576 2585 2589 CONECT 2585 2584 2586 2587 CONECT 2586 2585 CONECT 2587 2585 2588 2590 CONECT 2588 2587 2589 2591 CONECT 2589 2584 2588 CONECT 2590 2587 CONECT 2591 2588 2592 CONECT 2592 2591 2593 CONECT 2593 2592 2594 2595 2596 CONECT 2594 2593 CONECT 2595 2593 CONECT 2596 2593 2597 CONECT 2597 2596 2598 2599 2600 CONECT 2598 2597 CONECT 2599 2597 CONECT 2600 2597 MASTER 349 0 13 11 13 0 17 6 2886 1 202 27 END