HEADER HORMONE/GROWTH FACTOR 06-OCT-05 2B8A TITLE HIGH RESOLUTION STRUCTURE OF THE HDGF PWWP DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOMA-DERIVED GROWTH FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PWWP DOMAIN; COMPND 5 SYNONYM: HDGF; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: HDGF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS PARALLEL II KEYWDS PWWP, HDGF, HORMONE-GROWTH FACTOR COMPLEX EXPDTA SOLUTION NMR NUMMDL 26 AUTHOR S.M.LUKASIK,T.CIERPICKI,M.BORLOZ,J.GREMBECKA,A.EVERETT,J.H.BUSHWELLER REVDAT 4 09-MAR-22 2B8A 1 REMARK REVDAT 3 24-FEB-09 2B8A 1 VERSN REVDAT 2 21-MAR-06 2B8A 1 JRNL REVDAT 1 06-DEC-05 2B8A 0 JRNL AUTH S.M.LUKASIK,T.CIERPICKI,M.BORLOZ,J.GREMBECKA,A.EVERETT, JRNL AUTH 2 J.H.BUSHWELLER JRNL TITL HIGH RESOLUTION STRUCTURE OF THE HDGF PWWP DOMAIN: A JRNL TITL 2 POTENTIAL DNA BINDING DOMAIN. JRNL REF PROTEIN SCI. V. 15 314 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16384999 JRNL DOI 10.1110/PS.051751706 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.3, CNS 1.1 REMARK 3 AUTHORS : DELAGLIO ET AL (NMRPIPE), BRUNGER ET AL (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE IS BAED ON 1415 DISTANCE REMARK 3 RESTRAINTS, 79 DIHEDRAL ANGLES, 23 HYDROGEN BONDS, 54 JHNHA REMARK 3 COUPLINGS AND 258 RDCS REMARK 4 REMARK 4 2B8A COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034799. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 301; 301 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 50 MM; 200 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : HDGF U-15N,13C; 20 MM PHOSPHATE REMARK 210 BUFFER 6.5; 50 MM KCL; 1 MM DTT; REMARK 210 HDGF U-15N,13C; 20 MM PHOSPHATE REMARK 210 BUFFER 6.5; 200 MM NACL; 1 MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA; TROSY- REMARK 210 HNCO WITH HN COUPLINGS; TROSY- REMARK 210 HNCO WITH NCO COUPLINGS; TROSY- REMARK 210 HNCO WITH COCA COUPLINGS REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.110, CYANA 1.0.5 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 26 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 3 78.85 -118.45 REMARK 500 1 SER A 4 93.00 58.15 REMARK 500 1 GLU A 35 -80.24 -60.73 REMARK 500 1 ALA A 36 -63.02 -169.94 REMARK 500 1 ALA A 37 26.20 -166.36 REMARK 500 1 LYS A 39 -164.65 41.58 REMARK 500 1 SER A 40 56.09 -90.44 REMARK 500 1 ASN A 43 56.11 -153.98 REMARK 500 1 PHE A 50 178.53 -56.47 REMARK 500 1 PRO A 76 158.59 -48.26 REMARK 500 1 LYS A 80 141.28 66.34 REMARK 500 1 LYS A 96 159.92 62.52 REMARK 500 1 SER A 103 108.49 60.90 REMARK 500 2 SER A 2 -36.41 179.17 REMARK 500 2 ARG A 3 98.49 64.27 REMARK 500 2 SER A 4 -58.73 -136.68 REMARK 500 2 GLU A 35 -78.31 -84.21 REMARK 500 2 ALA A 36 -40.31 -168.76 REMARK 500 2 ALA A 37 86.19 -160.74 REMARK 500 2 VAL A 38 19.01 -150.17 REMARK 500 2 LYS A 39 -172.01 46.05 REMARK 500 2 THR A 41 89.78 -165.12 REMARK 500 2 ALA A 42 -75.18 -75.29 REMARK 500 2 ASN A 43 52.81 -156.64 REMARK 500 2 LYS A 80 144.15 63.37 REMARK 500 2 ASN A 92 87.43 -155.30 REMARK 500 2 CYS A 108 101.50 60.53 REMARK 500 3 GLN A 7 172.03 69.55 REMARK 500 3 GLU A 35 -86.05 -66.40 REMARK 500 3 ALA A 36 -54.58 -173.80 REMARK 500 3 ALA A 37 65.67 -170.30 REMARK 500 3 LYS A 39 -72.04 67.54 REMARK 500 3 SER A 40 40.56 176.31 REMARK 500 3 ASN A 43 56.65 -156.44 REMARK 500 3 PHE A 50 179.32 -57.57 REMARK 500 3 LYS A 80 141.22 62.70 REMARK 500 3 ASN A 92 84.09 -156.24 REMARK 500 3 TYR A 100 77.12 58.36 REMARK 500 3 GLN A 101 -46.86 -163.38 REMARK 500 3 CYS A 108 109.44 60.54 REMARK 500 4 ARG A 3 105.65 61.56 REMARK 500 4 SER A 4 141.49 -170.40 REMARK 500 4 GLU A 35 -94.54 -55.29 REMARK 500 4 ALA A 36 -48.69 -174.33 REMARK 500 4 ALA A 37 80.76 179.06 REMARK 500 4 VAL A 38 14.36 -146.78 REMARK 500 4 LYS A 39 -60.60 -166.05 REMARK 500 4 SER A 40 43.05 171.98 REMARK 500 4 ASN A 43 56.52 -156.06 REMARK 500 4 LYS A 80 144.56 63.65 REMARK 500 REMARK 500 THIS ENTRY HAS 404 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2B8A A 1 110 UNP Q8VHK7 HDGF_RAT 1 110 SEQRES 1 A 110 MET SER ARG SER ASN ARG GLN LYS GLU TYR LYS CYS GLY SEQRES 2 A 110 ASP LEU VAL PHE ALA LYS MET LYS GLY TYR PRO HIS TRP SEQRES 3 A 110 PRO ALA ARG ILE ASP GLU MET PRO GLU ALA ALA VAL LYS SEQRES 4 A 110 SER THR ALA ASN LYS TYR GLN VAL PHE PHE PHE GLY THR SEQRES 5 A 110 HIS GLU THR ALA PHE LEU GLY PRO LYS ASP LEU PHE PRO SEQRES 6 A 110 TYR GLU GLU SER LYS GLU LYS PHE GLY LYS PRO ASN LYS SEQRES 7 A 110 ARG LYS GLY PHE SER GLU GLY LEU TRP GLU ILE GLU ASN SEQRES 8 A 110 ASN PRO THR VAL LYS ALA SER GLY TYR GLN SER SER GLN SEQRES 9 A 110 LYS LYS SER CYS ALA GLU HELIX 1 1 GLY A 59 LYS A 61 5 3 HELIX 2 2 TYR A 66 GLY A 74 1 9 HELIX 3 3 GLY A 81 ASN A 92 1 12 SHEET 1 A 5 GLU A 54 LEU A 58 0 SHEET 2 A 5 TYR A 45 PHE A 49 -1 N PHE A 49 O GLU A 54 SHEET 3 A 5 TYR A 23 GLU A 32 -1 N ARG A 29 O PHE A 48 SHEET 4 A 5 LEU A 15 MET A 20 -1 N VAL A 16 O ALA A 28 SHEET 5 A 5 LEU A 63 PRO A 65 -1 O PHE A 64 N PHE A 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1