HEADER HYDROLASE 07-OCT-05 2B8J TITLE CRYSTAL STRUCTURE OF APHA CLASS B ACID PHOSPHATASE/PHOSPHOTRANSFERASE TITLE 2 TERNARY COMPLEX WITH ADENOSINE AND PHOSPHATE AT 2 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS B ACID PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APHA; COMPND 5 EC: 3.1.3.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: APHA, NAPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CLASS B ACID PHOSPHATASE; DDDD ACID PHOSPHATASE; METALLO-ENZYME; AMP, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.CALDERONE,C.FORLEO,M.BENVENUTI,M.C.THALLER,G.M.ROSSOLINI,S.MANGANI REVDAT 5 23-AUG-23 2B8J 1 REMARK LINK REVDAT 4 13-JUL-11 2B8J 1 VERSN REVDAT 3 24-FEB-09 2B8J 1 VERSN REVDAT 2 07-FEB-06 2B8J 1 JRNL REVDAT 1 29-NOV-05 2B8J 0 SPRSDE 29-NOV-05 2B8J 1RM7 JRNL AUTH V.CALDERONE,C.FORLEO,M.BENVENUTI,M.C.THALLER,G.M.ROSSOLINI, JRNL AUTH 2 S.MANGANI JRNL TITL A STRUCTURE-BASED PROPOSAL FOR THE CATALYTIC MECHANISM OF JRNL TITL 2 THE BACTERIAL ACID PHOSPHATASE APHA BELONGING TO THE DDDD JRNL TITL 3 SUPERFAMILY OF PHOSPHOHYDROLASES JRNL REF J.MOL.BIOL. V. 355 708 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16330049 JRNL DOI 10.1016/J.JMB.2005.10.068 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.THALLER,S.SCHIPPA,A.BONCI,S.CRESTI,G.M.ROSSOLINI REMARK 1 TITL IDENTIFICATION OF THE GENE (APHA) ENCODING THE CLASS B ACID REMARK 1 TITL 2 PHOSPHATASE/PHOSPHOTRANSFERASE OF ESCHERICHIA COLI MG1655 REMARK 1 TITL 3 AND CHARACTERIZATION OF ITS PRODUCT REMARK 1 REF FEMS MICROBIOL.LETT. V. 146 191 1997 REMARK 1 REFN ISSN 0378-1097 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.FORLEO,M.BENVENUTI,V.CALDERONE,S.SCHIPPA,J.D.DOCQUIER, REMARK 1 AUTH 2 M.C.THALLER,G.M.ROSSOLINI,S.MANGANI REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 X-RAY CHARACTERIZATION OF THE CLASS B ACID PHOSPHATASE REMARK 1 TITL 3 (APHA) FROM ESCHERICHIA COLI REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 1058 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2330 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1610 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : -0.75000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.199 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3438 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4674 ; 1.591 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 420 ; 6.162 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;42.108 ;24.146 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 539 ;14.273 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.857 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2684 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1602 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2348 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 226 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.009 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 90 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.222 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2112 ; 0.869 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3426 ; 1.560 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1326 ; 2.578 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1248 ; 4.117 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2B8J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000034808. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.001 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 PLUS SI(111) AND SI(220) REMARK 200 OPTICS : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28127 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.033 REMARK 200 RESOLUTION RANGE LOW (A) : 49.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.14700 REMARK 200 R SYM FOR SHELL (I) : 0.14700 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1N8N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: APHA 6MG/ML, 50 MM NA ACETATE, 25% PEG REMARK 280 6000, 10MM AMP, PH 7.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.98300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.27200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.98300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.27200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER, BUT THERE IS A DIMER REMARK 300 IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 157 OE1 REMARK 480 ILE B 185 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 45 -63.85 -98.09 REMARK 500 SER A 64 70.23 -151.81 REMARK 500 SER B 64 63.74 -162.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 311 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD2 REMARK 620 2 ASP A 46 O 91.7 REMARK 620 3 ASP A 167 OD1 90.2 89.3 REMARK 620 4 HOH A 670 O 86.9 98.5 171.8 REMARK 620 5 HOH A 737 O 88.3 178.7 92.0 80.2 REMARK 620 6 HOH A 757 O 174.0 86.7 95.6 87.5 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 312 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 44 OD2 REMARK 620 2 ASP B 46 O 89.7 REMARK 620 3 ASP B 167 OD1 86.9 87.9 REMARK 620 4 HOH B 348 O 90.4 99.5 172.2 REMARK 620 5 HOH B 350 O 86.8 175.2 88.7 83.8 REMARK 620 6 HOH B 352 O 178.0 89.2 94.7 88.1 94.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM A 653 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN B 331 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B82 RELATED DB: PDB REMARK 900 RELATED ID: 1N8N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AU3+ COMPLEX OF APHA CLASS B ACID REMARK 900 PHOSPHATASE/PHOSPHOTRANSFERASE FROM E. COLI AT 1.7 A RESOLUTION REMARK 900 RELATED ID: 1N9K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BROMIDE ADDUCT OF APHA CLASS B ACID REMARK 900 PHOSPHATASE/PHOSPHOTRANSFERASE FROM E. COLI AT 2.2 A RESOLUTION DBREF 2B8J A 2 212 UNP P32697 APHA_ECOLI 27 237 DBREF 2B8J B 2 212 UNP P32697 APHA_ECOLI 27 237 SEQRES 1 A 211 SER PRO SER PRO LEU ASN PRO GLY THR ASN VAL ALA ARG SEQRES 2 A 211 LEU ALA GLU GLN ALA PRO ILE HIS TRP VAL SER VAL ALA SEQRES 3 A 211 GLN ILE GLU ASN SER LEU ALA GLY ARG PRO PRO MET ALA SEQRES 4 A 211 VAL GLY PHE ASP ILE ASP ASP THR VAL LEU PHE SER SER SEQRES 5 A 211 PRO GLY PHE TRP ARG GLY LYS LYS THR PHE SER PRO GLU SEQRES 6 A 211 SER GLU ASP TYR LEU LYS ASN PRO VAL PHE TRP GLU LYS SEQRES 7 A 211 MET ASN ASN GLY TRP ASP GLU PHE SER ILE PRO LYS GLU SEQRES 8 A 211 VAL ALA ARG GLN LEU ILE ASP MET HIS VAL ARG ARG GLY SEQRES 9 A 211 ASP ALA ILE PHE PHE VAL THR GLY ARG SER PRO THR LYS SEQRES 10 A 211 THR GLU THR VAL SER LYS THR LEU ALA ASP ASN PHE HIS SEQRES 11 A 211 ILE PRO ALA THR ASN MET ASN PRO VAL ILE PHE ALA GLY SEQRES 12 A 211 ASP LYS PRO GLY GLN ASN THR LYS SER GLN TRP LEU GLN SEQRES 13 A 211 ASP LYS ASN ILE ARG ILE PHE TYR GLY ASP SER ASP ASN SEQRES 14 A 211 ASP ILE THR ALA ALA ARG ASP VAL GLY ALA ARG GLY ILE SEQRES 15 A 211 ARG ILE LEU ARG ALA SER ASN SER THR TYR LYS PRO LEU SEQRES 16 A 211 PRO GLN ALA GLY ALA PHE GLY GLU GLU VAL ILE VAL ASN SEQRES 17 A 211 SER GLU TYR SEQRES 1 B 211 SER PRO SER PRO LEU ASN PRO GLY THR ASN VAL ALA ARG SEQRES 2 B 211 LEU ALA GLU GLN ALA PRO ILE HIS TRP VAL SER VAL ALA SEQRES 3 B 211 GLN ILE GLU ASN SER LEU ALA GLY ARG PRO PRO MET ALA SEQRES 4 B 211 VAL GLY PHE ASP ILE ASP ASP THR VAL LEU PHE SER SER SEQRES 5 B 211 PRO GLY PHE TRP ARG GLY LYS LYS THR PHE SER PRO GLU SEQRES 6 B 211 SER GLU ASP TYR LEU LYS ASN PRO VAL PHE TRP GLU LYS SEQRES 7 B 211 MET ASN ASN GLY TRP ASP GLU PHE SER ILE PRO LYS GLU SEQRES 8 B 211 VAL ALA ARG GLN LEU ILE ASP MET HIS VAL ARG ARG GLY SEQRES 9 B 211 ASP ALA ILE PHE PHE VAL THR GLY ARG SER PRO THR LYS SEQRES 10 B 211 THR GLU THR VAL SER LYS THR LEU ALA ASP ASN PHE HIS SEQRES 11 B 211 ILE PRO ALA THR ASN MET ASN PRO VAL ILE PHE ALA GLY SEQRES 12 B 211 ASP LYS PRO GLY GLN ASN THR LYS SER GLN TRP LEU GLN SEQRES 13 B 211 ASP LYS ASN ILE ARG ILE PHE TYR GLY ASP SER ASP ASN SEQRES 14 B 211 ASP ILE THR ALA ALA ARG ASP VAL GLY ALA ARG GLY ILE SEQRES 15 B 211 ARG ILE LEU ARG ALA SER ASN SER THR TYR LYS PRO LEU SEQRES 16 B 211 PRO GLN ALA GLY ALA PHE GLY GLU GLU VAL ILE VAL ASN SEQRES 17 B 211 SER GLU TYR HET MG A 311 1 HET SPM A 653 14 HET PO4 A 301 5 HET AU A 320 1 HET AU3 A 321 1 HET MG B 312 1 HET ADN B 331 19 HETNAM MG MAGNESIUM ION HETNAM SPM SPERMINE HETNAM PO4 PHOSPHATE ION HETNAM AU GOLD ION HETNAM AU3 GOLD 3+ ION HETNAM ADN ADENOSINE FORMUL 3 MG 2(MG 2+) FORMUL 4 SPM C10 H26 N4 FORMUL 5 PO4 O4 P 3- FORMUL 6 AU AU 1+ FORMUL 7 AU3 AU 3+ FORMUL 9 ADN C10 H13 N5 O4 FORMUL 10 HOH *209(H2 O) HELIX 1 1 ASN A 11 GLU A 17 1 7 HELIX 2 2 SER A 25 LEU A 33 1 9 HELIX 3 3 SER A 52 SER A 64 1 13 HELIX 4 4 GLU A 68 LYS A 72 5 5 HELIX 5 5 ASN A 73 ASN A 82 1 10 HELIX 6 6 GLY A 83 SER A 88 5 6 HELIX 7 7 LYS A 91 GLY A 105 1 15 HELIX 8 8 THR A 121 PHE A 130 1 10 HELIX 9 9 LYS A 152 LYS A 159 1 8 HELIX 10 10 SER A 168 VAL A 178 1 11 HELIX 11 11 ASN B 11 GLU B 17 1 7 HELIX 12 12 SER B 25 ALA B 34 1 10 HELIX 13 13 SER B 52 SER B 64 1 13 HELIX 14 14 GLU B 68 LYS B 72 5 5 HELIX 15 15 ASN B 73 ASN B 81 1 9 HELIX 16 16 ASN B 82 SER B 88 5 7 HELIX 17 17 LYS B 91 GLY B 105 1 15 HELIX 18 18 THR B 121 PHE B 130 1 10 HELIX 19 19 THR B 151 LYS B 159 1 9 HELIX 20 20 SER B 168 VAL B 178 1 11 SHEET 1 A 7 HIS A 22 VAL A 24 0 SHEET 2 A 7 GLU A 205 ILE A 207 1 O VAL A 206 N VAL A 24 SHEET 3 A 7 ARG A 181 ARG A 184 1 N ARG A 184 O GLU A 205 SHEET 4 A 7 ILE A 161 GLY A 166 1 N ARG A 162 O ARG A 181 SHEET 5 A 7 ALA A 40 PHE A 43 1 N GLY A 42 O ILE A 163 SHEET 6 A 7 ALA A 107 THR A 112 1 O ALA A 107 N VAL A 41 SHEET 7 A 7 ILE A 141 PHE A 142 1 O ILE A 141 N THR A 112 SHEET 1 B 2 LEU A 50 PHE A 51 0 SHEET 2 B 2 ILE A 89 PRO A 90 -1 O ILE A 89 N PHE A 51 SHEET 1 C 7 HIS B 22 VAL B 24 0 SHEET 2 C 7 GLU B 205 ILE B 207 1 O VAL B 206 N VAL B 24 SHEET 3 C 7 ARG B 181 ARG B 184 1 N ARG B 184 O GLU B 205 SHEET 4 C 7 ILE B 161 GLY B 166 1 N ARG B 162 O ARG B 181 SHEET 5 C 7 ALA B 40 PHE B 43 1 N ALA B 40 O ARG B 162 SHEET 6 C 7 ALA B 107 THR B 112 1 O PHE B 109 N VAL B 41 SHEET 7 C 7 ILE B 141 PHE B 142 1 O ILE B 141 N PHE B 110 SHEET 1 D 2 LEU B 50 PHE B 51 0 SHEET 2 D 2 ILE B 89 PRO B 90 -1 O ILE B 89 N PHE B 51 LINK OD2 ASP A 44 MG MG A 311 1555 1555 2.10 LINK O ASP A 46 MG MG A 311 1555 1555 2.08 LINK OD1 ASP A 167 MG MG A 311 1555 1555 1.98 LINK MG MG A 311 O HOH A 670 1555 1555 2.19 LINK MG MG A 311 O HOH A 737 1555 1555 2.11 LINK MG MG A 311 O HOH A 757 1555 1555 2.12 LINK OD2 ASP B 44 MG MG B 312 1555 1555 1.99 LINK O ASP B 46 MG MG B 312 1555 1555 2.08 LINK OD1 ASP B 167 MG MG B 312 1555 1555 2.01 LINK MG MG B 312 O HOH B 348 1555 1555 2.06 LINK MG MG B 312 O HOH B 350 1555 1555 2.09 LINK MG MG B 312 O HOH B 352 1555 1555 2.08 CISPEP 1 LYS A 194 PRO A 195 0 -1.69 CISPEP 2 SER B 2 PRO B 3 0 16.96 CISPEP 3 LYS B 194 PRO B 195 0 1.31 SITE 1 AC1 6 ASP A 44 ASP A 46 ASP A 167 HOH A 670 SITE 2 AC1 6 HOH A 737 HOH A 757 SITE 1 AC2 6 ASP B 44 ASP B 46 ASP B 167 HOH B 348 SITE 2 AC2 6 HOH B 350 HOH B 352 SITE 1 AC3 10 ASP A 46 PHE A 56 LYS A 60 TYR A 70 SITE 2 AC3 10 GLY A 113 THR A 192 TYR A 193 PO4 A 301 SITE 3 AC3 10 AU A 320 HOH A 696 SITE 1 AC4 9 ASP A 44 GLY A 113 ASP A 145 LYS A 152 SITE 2 AC4 9 ASN A 170 SPM A 653 HOH A 660 HOH A 670 SITE 3 AC4 9 HOH A 737 SITE 1 AC5 1 SPM A 653 SITE 1 AC6 10 ASP B 46 SER B 53 PHE B 56 TYR B 70 SITE 2 AC6 10 TRP B 77 GLY B 113 ARG B 114 THR B 192 SITE 3 AC6 10 TYR B 193 HOH B 336 CRYST1 89.966 66.544 91.544 90.00 124.02 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011115 0.000000 0.007503 0.00000 SCALE2 0.000000 0.015028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013179 0.00000