HEADER TRANSPORT PROTEIN 10-OCT-05 2B95 TITLE SOLUTION NMR STRUCTURE OF PROTEIN DYNEIN LIGHT CHAIN 2A, CYTOPLASMIC; TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR2106 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNEIN LIGHT CHAIN 2A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DYNEIN-ASSOCIATED PROTEIN KM23, BITHORAXOID-LIKE PROTEIN, COMPND 5 BLP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHR2106.14.1 DERIVED FROM PET14 KEYWDS DYNEIN LIGHT CHAIN 2A, CYTOPLASMIC, HOMODIMER, STRUCTURAL GENOMICS, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,H.S.ATREYA,R.XIAO,T.ACTON,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 09-MAR-22 2B95 1 REMARK SEQADV REVDAT 2 24-FEB-09 2B95 1 VERSN REVDAT 1 01-NOV-05 2B95 0 SPRSDE 01-NOV-05 2B95 1TGQ JRNL AUTH G.LIU,H.S.ATREYA,R.XIAO,T.ACTON,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF PROTEIN DYNEIN LIGHT CHAIN 2A, JRNL TITL 2 CYTOPLASMIC; NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET JRNL TITL 3 HR2106 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.1, CYANA 2.1 REMARK 3 AUTHORS : DELAGLIO, F. (NMRPIPE), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B95 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034830. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM DYNEIN LIGHT CHAIN 2A, U REMARK 210 -15N, 13C, 50 MM MES, 95% H2O, 5% REMARK 210 D2O, 0.02% NAN3, PH 6.0 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_15N_13C_ REMARK 210 FILTER-EDIT SIMULTANEOUS NOESY; REMARK 210 RD 3D HABCABCONHN; GFT (4,3) REMARK 210 HNCABCA; GFT (4,3) CABCACONHN REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3.1, DYANA 1.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY TORSION ANGLE REMARK 210 DYNAMICS SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING GFT/RD NMR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 HIS A 10 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 SER B 9 REMARK 465 HIS B 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 39 89.12 -69.74 REMARK 500 1 MET A 44 -174.63 -64.55 REMARK 500 1 THR A 77 20.38 -153.08 REMARK 500 1 PHE A 78 132.04 -179.08 REMARK 500 1 ASP A 93 -168.59 -109.71 REMARK 500 1 ASP A 95 18.89 -153.47 REMARK 500 1 PRO B 39 82.15 -69.81 REMARK 500 1 MET B 44 -171.52 -68.81 REMARK 500 1 ASP B 75 116.96 -171.46 REMARK 500 1 THR B 77 17.18 -143.22 REMARK 500 1 PHE B 78 125.26 -171.42 REMARK 500 1 ASP B 93 -168.29 -111.96 REMARK 500 1 ASP B 95 19.15 -153.68 REMARK 500 2 PRO A 39 77.21 -69.76 REMARK 500 2 MET A 44 -171.34 -63.73 REMARK 500 2 LYS A 85 -66.29 -99.24 REMARK 500 2 ASP A 95 17.80 -151.22 REMARK 500 2 ASN B 34 -169.72 -67.55 REMARK 500 2 MET B 44 -168.76 -76.54 REMARK 500 2 ASP B 75 116.97 -167.29 REMARK 500 2 THR B 77 18.69 -142.49 REMARK 500 2 PHE B 78 123.53 -174.62 REMARK 500 2 ASN B 86 -178.94 -179.18 REMARK 500 2 ASP B 93 -168.52 -73.75 REMARK 500 2 ASP B 95 16.00 -148.47 REMARK 500 3 PRO A 39 82.19 -69.76 REMARK 500 3 MET A 44 -169.16 -68.07 REMARK 500 3 PHE A 78 121.86 -175.73 REMARK 500 3 ASP A 93 -168.70 -106.93 REMARK 500 3 ASP A 95 17.82 -151.51 REMARK 500 3 MET B 44 -171.73 -62.37 REMARK 500 3 PHE B 78 134.24 -179.31 REMARK 500 3 ASP B 93 -167.06 -103.58 REMARK 500 3 ASP B 95 18.89 -153.06 REMARK 500 4 PRO A 39 78.35 -69.77 REMARK 500 4 MET A 44 -168.68 -103.65 REMARK 500 4 ASP A 75 116.83 -162.00 REMARK 500 4 THR A 77 18.35 -143.73 REMARK 500 4 PHE A 78 124.07 -171.25 REMARK 500 4 ASP A 95 16.40 -149.00 REMARK 500 4 ASN B 34 -169.82 -102.70 REMARK 500 4 PRO B 39 83.49 -69.80 REMARK 500 4 MET B 44 -168.30 -100.45 REMARK 500 4 THR B 77 15.49 -141.78 REMARK 500 4 PHE B 78 141.58 -179.46 REMARK 500 4 ASP B 95 19.23 -153.76 REMARK 500 5 ASN A 34 -169.91 -67.20 REMARK 500 5 SER A 42 111.42 -165.17 REMARK 500 5 MET A 44 -169.54 -61.30 REMARK 500 5 SER A 83 -169.97 -106.58 REMARK 500 REMARK 500 THIS ENTRY HAS 238 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HR2106 RELATED DB: TARGETDB DBREF 2B95 A 11 106 UNP Q9NP97 DLC2A_HUMAN 0 95 DBREF 2B95 B 11 106 UNP Q9NP97 DLC2A_HUMAN 0 95 SEQADV 2B95 MET A 1 UNP Q9NP97 CLONING ARTIFACT SEQADV 2B95 GLY A 2 UNP Q9NP97 CLONING ARTIFACT SEQADV 2B95 HIS A 3 UNP Q9NP97 EXPRESSION TAG SEQADV 2B95 HIS A 4 UNP Q9NP97 EXPRESSION TAG SEQADV 2B95 HIS A 5 UNP Q9NP97 EXPRESSION TAG SEQADV 2B95 HIS A 6 UNP Q9NP97 EXPRESSION TAG SEQADV 2B95 HIS A 7 UNP Q9NP97 EXPRESSION TAG SEQADV 2B95 HIS A 8 UNP Q9NP97 EXPRESSION TAG SEQADV 2B95 SER A 9 UNP Q9NP97 CLONING ARTIFACT SEQADV 2B95 HIS A 10 UNP Q9NP97 CLONING ARTIFACT SEQADV 2B95 MET B 1 UNP Q9NP97 CLONING ARTIFACT SEQADV 2B95 GLY B 2 UNP Q9NP97 CLONING ARTIFACT SEQADV 2B95 HIS B 3 UNP Q9NP97 EXPRESSION TAG SEQADV 2B95 HIS B 4 UNP Q9NP97 EXPRESSION TAG SEQADV 2B95 HIS B 5 UNP Q9NP97 EXPRESSION TAG SEQADV 2B95 HIS B 6 UNP Q9NP97 EXPRESSION TAG SEQADV 2B95 HIS B 7 UNP Q9NP97 EXPRESSION TAG SEQADV 2B95 HIS B 8 UNP Q9NP97 EXPRESSION TAG SEQADV 2B95 SER B 9 UNP Q9NP97 CLONING ARTIFACT SEQADV 2B95 HIS B 10 UNP Q9NP97 CLONING ARTIFACT SEQRES 1 A 106 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET ALA GLU SEQRES 2 A 106 VAL GLU GLU THR LEU LYS ARG LEU GLN SER GLN LYS GLY SEQRES 3 A 106 VAL GLN GLY ILE ILE VAL VAL ASN THR GLU GLY ILE PRO SEQRES 4 A 106 ILE LYS SER THR MET ASP ASN PRO THR THR THR GLN TYR SEQRES 5 A 106 ALA SER LEU MET HIS SER PHE ILE LEU LYS ALA ARG SER SEQRES 6 A 106 THR VAL ARG ASP ILE ASP PRO GLN ASN ASP LEU THR PHE SEQRES 7 A 106 LEU ARG ILE ARG SER LYS LYS ASN GLU ILE MET VAL ALA SEQRES 8 A 106 PRO ASP LYS ASP TYR PHE LEU ILE VAL ILE GLN ASN PRO SEQRES 9 A 106 THR GLU SEQRES 1 B 106 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET ALA GLU SEQRES 2 B 106 VAL GLU GLU THR LEU LYS ARG LEU GLN SER GLN LYS GLY SEQRES 3 B 106 VAL GLN GLY ILE ILE VAL VAL ASN THR GLU GLY ILE PRO SEQRES 4 B 106 ILE LYS SER THR MET ASP ASN PRO THR THR THR GLN TYR SEQRES 5 B 106 ALA SER LEU MET HIS SER PHE ILE LEU LYS ALA ARG SER SEQRES 6 B 106 THR VAL ARG ASP ILE ASP PRO GLN ASN ASP LEU THR PHE SEQRES 7 B 106 LEU ARG ILE ARG SER LYS LYS ASN GLU ILE MET VAL ALA SEQRES 8 B 106 PRO ASP LYS ASP TYR PHE LEU ILE VAL ILE GLN ASN PRO SEQRES 9 B 106 THR GLU HELIX 1 1 MET A 11 GLN A 24 1 14 HELIX 2 2 ASP A 45 ASP A 71 1 27 HELIX 3 3 MET B 11 GLN B 24 1 14 HELIX 4 4 ASP B 45 ASP B 71 1 27 SHEET 1 A10 PRO A 39 SER A 42 0 SHEET 2 A10 VAL A 27 ASN A 34 -1 N VAL A 32 O LYS A 41 SHEET 3 A10 TYR A 96 GLN A 102 -1 O PHE A 97 N VAL A 33 SHEET 4 A10 GLU A 87 PRO A 92 -1 N MET A 89 O VAL A 100 SHEET 5 A10 LEU A 76 ARG A 82 -1 N LEU A 79 O VAL A 90 SHEET 6 A10 PHE B 78 SER B 83 -1 O ARG B 82 N THR A 77 SHEET 7 A10 GLU B 87 PRO B 92 -1 O VAL B 90 N LEU B 79 SHEET 8 A10 TYR B 96 GLN B 102 -1 O VAL B 100 N MET B 89 SHEET 9 A10 VAL B 27 ASN B 34 -1 N VAL B 33 O PHE B 97 SHEET 10 A10 PRO B 39 SER B 42 -1 O LYS B 41 N VAL B 32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1