HEADER TRANSFERASE 11-OCT-05 2B98 TITLE CRYSTAL STRUCTURE OF AN ARCHAEAL PENTAMERIC RIBOFLAVIN SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOFLAVIN SYNTHASE; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 EC: 2.5.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: RIBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNCO113 KEYWDS LUMAZINE RIBOFLAVIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.RAMSPERGER,M.AUGUSTIN,A.K.SCHOTT,S.GERHARDT,T.KROJER,W.EISENREICH, AUTHOR 2 B.ILLARIONOV,M.CUSHMAN,A.BACHER,R.HUBER,M.FISCHER REVDAT 5 14-FEB-24 2B98 1 REMARK REVDAT 4 13-JUL-11 2B98 1 VERSN REVDAT 3 24-FEB-09 2B98 1 VERSN REVDAT 2 24-JAN-06 2B98 1 JRNL REVDAT 1 08-NOV-05 2B98 0 JRNL AUTH A.RAMSPERGER,M.AUGUSTIN,A.K.SCHOTT,S.GERHARDT,T.KROJER, JRNL AUTH 2 W.EISENREICH,B.ILLARIONOV,M.CUSHMAN,A.BACHER,R.HUBER, JRNL AUTH 3 M.FISCHER JRNL TITL CRYSTAL STRUCTURE OF AN ARCHAEAL PENTAMERIC RIBOFLAVIN JRNL TITL 2 SYNTHASE IN COMPLEX WITH A SUBSTRATE ANALOG INHIBITOR: JRNL TITL 3 STEREOCHEMICAL IMPLICATIONS JRNL REF J.BIOL.CHEM. V. 281 1224 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16272154 JRNL DOI 10.1074/JBC.M509440200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1677 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2235 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5695 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : 0.57000 REMARK 3 B33 (A**2) : 1.34000 REMARK 3 B12 (A**2) : -0.16000 REMARK 3 B13 (A**2) : -0.32000 REMARK 3 B23 (A**2) : -1.27000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.411 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.771 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5421 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7324 ; 1.233 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 718 ; 5.350 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 867 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3916 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3004 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 318 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.151 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3588 ; 0.400 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5704 ; 0.758 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1833 ; 1.245 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1620 ; 1.948 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 27 5 REMARK 3 1 B 5 B 27 5 REMARK 3 1 C 5 C 27 5 REMARK 3 1 D 5 D 27 5 REMARK 3 1 E 5 E 27 5 REMARK 3 2 A 36 A 100 5 REMARK 3 2 B 36 B 100 5 REMARK 3 2 C 36 C 100 5 REMARK 3 2 D 36 D 100 5 REMARK 3 2 E 36 E 100 5 REMARK 3 3 A 109 A 137 5 REMARK 3 3 B 109 B 137 5 REMARK 3 3 C 109 C 137 5 REMARK 3 3 D 109 D 137 5 REMARK 3 3 E 109 E 137 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 468 ; 0.18 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 468 ; 0.19 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 468 ; 0.16 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 468 ; 0.19 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 E (A): 468 ; 0.15 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 351 ; 0.33 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 351 ; 0.31 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 351 ; 0.26 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 351 ; 0.37 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 E (A): 351 ; 0.34 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 468 ; 0.44 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 468 ; 0.45 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 468 ; 0.44 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 468 ; 0.41 ; 2.00 REMARK 3 MEDIUM THERMAL 1 E (A**2): 468 ; 0.42 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 351 ; 1.22 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 351 ; 1.51 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 351 ; 1.44 ; 10.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 351 ; 1.33 ; 10.00 REMARK 3 LOOSE THERMAL 1 E (A**2): 351 ; 1.36 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1818 -3.5726 -20.8946 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0474 REMARK 3 T33: 0.0172 T12: -0.0025 REMARK 3 T13: 0.0088 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.6485 L22: 0.9517 REMARK 3 L33: 0.5545 L12: -0.2276 REMARK 3 L13: 0.2972 L23: -0.1498 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: 0.0352 S13: -0.0984 REMARK 3 S21: -0.0668 S22: 0.0233 S23: -0.0095 REMARK 3 S31: -0.0147 S32: -0.0399 S33: -0.0355 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7744 -21.3829 -2.7545 REMARK 3 T TENSOR REMARK 3 T11: 0.0467 T22: 0.0082 REMARK 3 T33: 0.0508 T12: 0.0048 REMARK 3 T13: -0.0014 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.7711 L22: 0.7014 REMARK 3 L33: 0.6552 L12: 0.1061 REMARK 3 L13: 0.1527 L23: -0.0738 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: -0.0522 S13: -0.0672 REMARK 3 S21: -0.0492 S22: 0.0065 S23: -0.0137 REMARK 3 S31: 0.0615 S32: 0.0126 S33: -0.0038 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 153 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1484 14.8024 15.9109 REMARK 3 T TENSOR REMARK 3 T11: 0.0237 T22: 0.0275 REMARK 3 T33: 0.0204 T12: -0.0023 REMARK 3 T13: 0.0012 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.4113 L22: 0.5197 REMARK 3 L33: 0.9036 L12: -0.0668 REMARK 3 L13: 0.0236 L23: 0.0596 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: 0.0050 S13: 0.0039 REMARK 3 S21: 0.0090 S22: -0.0071 S23: 0.0165 REMARK 3 S31: -0.0152 S32: -0.0052 S33: -0.0068 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 142 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1287 -9.4417 19.6330 REMARK 3 T TENSOR REMARK 3 T11: 0.0440 T22: 0.0393 REMARK 3 T33: 0.0290 T12: -0.0069 REMARK 3 T13: -0.0207 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.4506 L22: 0.8614 REMARK 3 L33: 0.6965 L12: 0.1600 REMARK 3 L13: -0.1737 L23: -0.1734 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: -0.0730 S13: -0.0631 REMARK 3 S21: 0.0227 S22: -0.0352 S23: -0.0345 REMARK 3 S31: 0.0451 S32: -0.0076 S33: 0.0041 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 153 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9811 19.5137 -9.0937 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0157 REMARK 3 T33: 0.0325 T12: 0.0065 REMARK 3 T13: 0.0026 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.4798 L22: 0.6649 REMARK 3 L33: 0.5614 L12: -0.0784 REMARK 3 L13: -0.1251 L23: 0.0766 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: 0.0801 S13: -0.0093 REMARK 3 S21: -0.0303 S22: 0.0033 S23: 0.0008 REMARK 3 S31: -0.0009 S32: -0.0579 S33: -0.0071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32165 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.0, AND 40% MPD., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A PENTAMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 144 REMARK 465 ARG A 145 REMARK 465 GLN A 146 REMARK 465 GLY A 147 REMARK 465 PHE A 148 REMARK 465 GLU A 149 REMARK 465 ASP A 150 REMARK 465 ALA A 151 REMARK 465 GLY A 152 REMARK 465 PRO A 153 REMARK 465 ALA A 154 REMARK 465 ARG A 155 REMARK 465 GLU A 156 REMARK 465 MET B 1 REMARK 465 GLY B 143 REMARK 465 LEU B 144 REMARK 465 ARG B 145 REMARK 465 GLN B 146 REMARK 465 GLY B 147 REMARK 465 PHE B 148 REMARK 465 GLU B 149 REMARK 465 ASP B 150 REMARK 465 ALA B 151 REMARK 465 GLY B 152 REMARK 465 PRO B 153 REMARK 465 ALA B 154 REMARK 465 ARG B 155 REMARK 465 GLU B 156 REMARK 465 MET C 1 REMARK 465 ALA C 154 REMARK 465 ARG C 155 REMARK 465 GLU C 156 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 GLY D 143 REMARK 465 LEU D 144 REMARK 465 ARG D 145 REMARK 465 GLN D 146 REMARK 465 GLY D 147 REMARK 465 PHE D 148 REMARK 465 GLU D 149 REMARK 465 ASP D 150 REMARK 465 ALA D 151 REMARK 465 GLY D 152 REMARK 465 PRO D 153 REMARK 465 ALA D 154 REMARK 465 ARG D 155 REMARK 465 GLU D 156 REMARK 465 MET E 1 REMARK 465 ALA E 154 REMARK 465 ARG E 155 REMARK 465 GLU E 156 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 23 CB CG CD CE NZ REMARK 480 LYS A 26 CE NZ REMARK 480 ASN A 31 CG OD1 ND2 REMARK 480 LYS A 33 CD CE NZ REMARK 480 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 37 CD CE NZ REMARK 480 LYS A 69 CD CE NZ REMARK 480 GLU A 71 CD OE1 OE2 REMARK 480 LYS A 72 CG CD CE NZ REMARK 480 LYS A 74 CE NZ REMARK 480 ASP A 108 CG OD1 OD2 REMARK 480 LYS A 109 CE NZ REMARK 480 LEU A 111 CB CG CD1 CD2 REMARK 480 ASP A 112 CG OD1 OD2 REMARK 480 ARG A 117 CD NE CZ NH1 NH2 REMARK 480 LYS A 132 CD CE NZ REMARK 480 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 142 CD CE NZ REMARK 480 THR B 2 CB OG1 CG2 REMARK 480 LYS B 3 CD CE NZ REMARK 480 ARG B 14 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 23 CG CD CE NZ REMARK 480 LYS B 26 CD CE NZ REMARK 480 GLU B 27 CG CD OE1 OE2 REMARK 480 ASN B 31 CG OD1 ND2 REMARK 480 LYS B 33 CG CD CE NZ REMARK 480 LYS B 37 CD CE NZ REMARK 480 LYS B 69 CG CD CE NZ REMARK 480 GLU B 71 CG CD OE1 OE2 REMARK 480 LYS B 72 CG CD CE NZ REMARK 480 LYS B 74 CG CD CE NZ REMARK 480 GLU B 79 CB CG CD OE1 OE2 REMARK 480 GLU B 102 CD OE1 OE2 REMARK 480 ASP B 108 CG OD1 OD2 REMARK 480 LEU B 111 CG CD1 CD2 REMARK 480 ARG B 118 CD NE CZ NH1 NH2 REMARK 480 LYS B 132 CE NZ REMARK 480 GLU B 134 OE1 OE2 REMARK 480 TYR B 135 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 480 MET B 139 CB CG SD CE REMARK 480 GLY B 141 C O REMARK 480 LYS B 142 CD CE NZ REMARK 480 THR C 2 N CB OG1 CG2 REMARK 480 LYS C 3 CE NZ REMARK 480 LYS C 23 CD CE NZ REMARK 480 LYS C 26 CD CE NZ REMARK 480 SER C 29 OG REMARK 480 ASN C 31 CG OD1 ND2 REMARK 480 LYS C 37 CG CD CE NZ REMARK 480 LYS C 69 CG CD CE NZ REMARK 480 GLU C 71 CB CG CD OE1 OE2 REMARK 480 LYS C 72 CB CG CD CE NZ REMARK 480 ASP C 73 CB CG OD1 OD2 REMARK 480 LYS C 74 CE NZ REMARK 480 LYS C 106 CG CD CE NZ REMARK 480 LYS C 109 CD CE NZ REMARK 480 LEU C 111 CB CG CD1 CD2 REMARK 480 GLU C 124 CD OE1 OE2 REMARK 480 GLU C 134 CG CD OE1 OE2 REMARK 480 ARG C 138 CD NE CZ NH1 NH2 REMARK 480 LYS C 142 NZ REMARK 480 LEU C 144 CG CD1 REMARK 480 PHE C 148 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS D 23 CG CD CE NZ REMARK 480 LYS D 26 CE NZ REMARK 480 LYS D 33 CD CE NZ REMARK 480 LYS D 37 CB CG CD CE NZ REMARK 480 GLU D 71 CB CG CD OE1 OE2 REMARK 480 LYS D 72 CG CD CE NZ REMARK 480 LYS D 74 CG CD CE NZ REMARK 480 LYS D 106 CG CD CE NZ REMARK 480 LYS D 109 CG CD CE NZ REMARK 480 ASP D 112 CG OD1 OD2 REMARK 480 LYS D 116 NZ REMARK 480 ARG D 117 NE CZ NH1 NH2 REMARK 480 ARG D 118 CD NE CZ NH1 NH2 REMARK 480 GLU D 124 CD OE1 OE2 REMARK 480 GLU D 134 CG CD OE1 OE2 REMARK 480 ARG D 138 CG CD NE CZ NH1 NH2 REMARK 480 GLY D 141 N CA REMARK 480 LYS D 142 CD CE NZ REMARK 480 THR E 2 CG2 REMARK 480 ARG E 14 CB CG CD NE CZ NH1 NH2 REMARK 480 MET E 17 CB CG SD CE REMARK 480 LYS E 23 CG CD CE NZ REMARK 480 LYS E 26 CE NZ REMARK 480 LYS E 37 CD CE NZ REMARK 480 LYS E 69 CD CE NZ REMARK 480 LYS E 72 CB CG CD CE NZ REMARK 480 ASP E 73 CG OD1 OD2 REMARK 480 LYS E 74 CE NZ REMARK 480 LYS E 109 CG CD CE NZ REMARK 480 ARG E 117 CD NE CZ NH1 NH2 REMARK 480 GLU E 134 CG CD OE1 OE2 REMARK 480 ARG E 138 CD NE CZ NH1 NH2 REMARK 480 LYS E 142 NZ REMARK 480 GLU E 149 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CZ ARG E 117 O HOH E 179 0.25 REMARK 500 CZ ARG A 36 O HOH A 170 0.30 REMARK 500 SD MET E 17 O HOH E 166 0.35 REMARK 500 CG LEU C 111 O HOH C 200 0.50 REMARK 500 CD2 TYR B 135 O HOH B 187 0.51 REMARK 500 CD GLU B 79 O HOH B 158 0.54 REMARK 500 OD2 ASP D 112 O HOH D 163 0.57 REMARK 500 SD MET B 139 O HOH B 196 0.64 REMARK 500 CG MET B 139 O HOH B 169 0.68 REMARK 500 NH1 ARG A 117 O HOH A 213 0.73 REMARK 500 OE1 GLU B 27 O HOH B 164 0.75 REMARK 500 CZ ARG A 117 O HOH A 213 0.79 REMARK 500 OD2 ASP A 112 O HOH A 185 0.81 REMARK 500 CG ASP C 73 O HOH C 174 0.83 REMARK 500 OE2 GLU B 79 O HOH B 158 0.92 REMARK 500 OD1 ASP D 112 O HOH D 191 1.00 REMARK 500 OD1 ASP C 73 O HOH C 174 1.01 REMARK 500 CE LYS C 106 O HOH C 188 1.02 REMARK 500 OD1 ASP A 108 O HOH A 210 1.03 REMARK 500 NE ARG A 36 O HOH A 170 1.05 REMARK 500 CD LYS C 106 O HOH C 188 1.07 REMARK 500 CG TYR B 135 O HOH B 187 1.08 REMARK 500 NH1 ARG E 117 O HOH E 179 1.10 REMARK 500 CG LEU A 111 O HOH A 212 1.14 REMARK 500 CD LYS B 33 O HOH B 208 1.15 REMARK 500 NZ LYS D 33 O HOH D 181 1.19 REMARK 500 NZ LYS C 37 O HOH C 204 1.21 REMARK 500 CD1 LEU C 111 O HOH C 200 1.24 REMARK 500 OD2 ASP C 73 O HOH C 174 1.25 REMARK 500 CD LYS A 132 OE1 GLU A 134 1.25 REMARK 500 OD1 ASP B 108 O HOH B 189 1.27 REMARK 500 CE LYS D 106 O HOH D 194 1.27 REMARK 500 OE1 GLU B 79 O HOH B 158 1.30 REMARK 500 CG ASP D 112 O HOH D 163 1.30 REMARK 500 CE MET E 17 O HOH E 176 1.32 REMARK 500 CB MET B 139 O HOH B 169 1.33 REMARK 500 O GLY B 141 N LYS B 142 1.36 REMARK 500 CD2 LEU C 111 O HOH C 200 1.38 REMARK 500 CE2 TYR B 135 O HOH B 187 1.38 REMARK 500 NZ LYS E 37 O HOH E 203 1.38 REMARK 500 CD GLU B 27 O HOH B 164 1.38 REMARK 500 CD ARG A 117 O HOH A 206 1.39 REMARK 500 NE ARG E 117 O HOH E 179 1.39 REMARK 500 NH1 ARG A 36 O HOH A 170 1.42 REMARK 500 CE LYS A 132 OE1 GLU A 134 1.42 REMARK 500 CE LYS C 37 O HOH C 204 1.47 REMARK 500 CE MET E 17 O HOH E 166 1.51 REMARK 500 NH2 ARG E 117 O HOH E 179 1.52 REMARK 500 NZ LYS B 37 O HOH B 168 1.55 REMARK 500 NE ARG A 117 O HOH A 206 1.55 REMARK 500 REMARK 500 THIS ENTRY HAS 98 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 23 CA LYS A 23 CB -0.174 REMARK 500 LYS A 26 CD LYS A 26 CE 0.702 REMARK 500 LYS A 69 CG LYS A 69 CD 0.419 REMARK 500 GLU A 71 CG GLU A 71 CD 0.727 REMARK 500 LYS A 74 CD LYS A 74 CE 0.403 REMARK 500 LYS A 109 CD LYS A 109 CE -0.762 REMARK 500 ASP A 112 CB ASP A 112 CG 0.302 REMARK 500 ARG A 117 CG ARG A 117 CD 0.560 REMARK 500 LYS A 132 CG LYS A 132 CD 1.285 REMARK 500 LYS A 142 CG LYS A 142 CD -0.246 REMARK 500 THR B 2 CA THR B 2 CB 0.529 REMARK 500 ARG B 14 CB ARG B 14 CG 0.561 REMARK 500 GLU B 27 CB GLU B 27 CG -0.268 REMARK 500 LYS B 69 CB LYS B 69 CG 0.302 REMARK 500 GLU B 71 CB GLU B 71 CG -0.161 REMARK 500 LYS B 72 CB LYS B 72 CG 0.199 REMARK 500 GLU B 79 CA GLU B 79 CB -0.189 REMARK 500 GLU B 102 CG GLU B 102 CD 0.256 REMARK 500 LYS B 132 CD LYS B 132 CE -0.247 REMARK 500 GLU B 134 CD GLU B 134 OE1 1.777 REMARK 500 GLU B 134 CD GLU B 134 OE2 0.772 REMARK 500 TYR B 135 CB TYR B 135 CG 0.400 REMARK 500 ARG B 138 CB ARG B 138 CG -0.183 REMARK 500 MET B 139 CA MET B 139 CB 0.278 REMARK 500 GLY B 141 CA GLY B 141 C 0.259 REMARK 500 GLY B 141 C LYS B 142 N 0.280 REMARK 500 LYS B 142 CG LYS B 142 CD 0.597 REMARK 500 LYS C 37 CB LYS C 37 CG -0.382 REMARK 500 LYS C 109 CG LYS C 109 CD 1.386 REMARK 500 ARG C 138 CG ARG C 138 CD -0.178 REMARK 500 LYS C 142 CE LYS C 142 NZ 0.150 REMARK 500 LEU C 144 CB LEU C 144 CG 0.281 REMARK 500 LEU C 144 CG LEU C 144 CD2 1.447 REMARK 500 PHE C 148 CB PHE C 148 CG 0.418 REMARK 500 LYS D 26 CD LYS D 26 CE 0.422 REMARK 500 LYS D 33 CG LYS D 33 CD 0.265 REMARK 500 LYS D 72 CB LYS D 72 CG -0.237 REMARK 500 LYS D 74 CB LYS D 74 CG -0.242 REMARK 500 LYS D 109 CB LYS D 109 CG 0.228 REMARK 500 LYS D 116 CE LYS D 116 NZ 0.364 REMARK 500 ARG D 117 CD ARG D 117 NE 0.155 REMARK 500 ARG D 118 CG ARG D 118 CD 0.282 REMARK 500 GLU D 124 CG GLU D 124 CD 0.750 REMARK 500 ARG D 138 CB ARG D 138 CG 0.254 REMARK 500 LYS D 142 CG LYS D 142 CD -0.399 REMARK 500 THR E 2 CB THR E 2 CG2 0.579 REMARK 500 ARG E 14 CA ARG E 14 CB -0.251 REMARK 500 LYS E 26 CD LYS E 26 CE -0.187 REMARK 500 LYS E 37 CG LYS E 37 CD 0.359 REMARK 500 LYS E 69 CG LYS E 69 CD -0.251 REMARK 500 REMARK 500 THIS ENTRY HAS 57 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 16 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 LYS A 26 CG - CD - CE ANGL. DEV. = -27.2 DEGREES REMARK 500 LYS A 26 CD - CE - NZ ANGL. DEV. = 29.5 DEGREES REMARK 500 ASN A 31 CB - CG - ND2 ANGL. DEV. = -14.6 DEGREES REMARK 500 LYS A 37 CB - CG - CD ANGL. DEV. = -22.5 DEGREES REMARK 500 LYS A 69 CG - CD - CE ANGL. DEV. = -43.9 DEGREES REMARK 500 GLU A 71 CB - CG - CD ANGL. DEV. = -46.8 DEGREES REMARK 500 GLU A 71 CG - CD - OE1 ANGL. DEV. = 29.1 DEGREES REMARK 500 GLU A 71 CG - CD - OE2 ANGL. DEV. = -49.9 DEGREES REMARK 500 ASP A 108 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 ASP A 108 CB - CG - OD1 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP A 108 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 LYS A 109 CG - CD - CE ANGL. DEV. = 42.7 DEGREES REMARK 500 LYS A 109 CD - CE - NZ ANGL. DEV. = 35.3 DEGREES REMARK 500 LEU A 111 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG A 117 CB - CG - CD ANGL. DEV. = -32.7 DEGREES REMARK 500 LYS A 132 CB - CG - CD ANGL. DEV. = -42.8 DEGREES REMARK 500 LYS A 132 CG - CD - CE ANGL. DEV. = 23.9 DEGREES REMARK 500 LYS A 142 CB - CG - CD ANGL. DEV. = -26.9 DEGREES REMARK 500 THR B 2 N - CA - CB ANGL. DEV. = 25.5 DEGREES REMARK 500 ARG B 14 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 14 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP B 16 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 GLU B 27 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 ASN B 31 CB - CG - ND2 ANGL. DEV. = -14.4 DEGREES REMARK 500 GLU B 102 CB - CG - CD ANGL. DEV. = 27.5 DEGREES REMARK 500 GLU B 102 CG - CD - OE2 ANGL. DEV. = -19.1 DEGREES REMARK 500 ASP B 108 CB - CG - OD1 ANGL. DEV. = -16.8 DEGREES REMARK 500 ASP B 108 CB - CG - OD2 ANGL. DEV. = 16.9 DEGREES REMARK 500 LEU B 111 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 ARG B 118 CG - CD - NE ANGL. DEV. = -14.9 DEGREES REMARK 500 ARG B 118 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 118 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 LYS B 132 CD - CE - NZ ANGL. DEV. = 29.8 DEGREES REMARK 500 GLU B 134 OE1 - CD - OE2 ANGL. DEV. = -76.8 DEGREES REMARK 500 TYR B 135 CA - CB - CG ANGL. DEV. = -14.3 DEGREES REMARK 500 TYR B 135 CB - CG - CD2 ANGL. DEV. = 4.7 DEGREES REMARK 500 TYR B 135 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 MET B 139 N - CA - CB ANGL. DEV. = -14.3 DEGREES REMARK 500 GLY B 141 O - C - N ANGL. DEV. = -67.5 DEGREES REMARK 500 LYS B 142 C - N - CA ANGL. DEV. = -36.5 DEGREES REMARK 500 LYS B 142 CB - CG - CD ANGL. DEV. = 56.9 DEGREES REMARK 500 LYS B 142 CG - CD - CE ANGL. DEV. = 18.2 DEGREES REMARK 500 LYS C 3 CD - CE - NZ ANGL. DEV. = 32.9 DEGREES REMARK 500 ASP C 9 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP C 16 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP C 59 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 LYS C 69 CA - CB - CG ANGL. DEV. = -14.4 DEGREES REMARK 500 GLU C 71 N - CA - CB ANGL. DEV. = 11.6 DEGREES REMARK 500 ASP C 73 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 85 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 9 -169.71 -125.72 REMARK 500 ASN A 92 53.83 -63.59 REMARK 500 ASP A 107 163.91 43.26 REMARK 500 LYS A 142 -78.50 82.05 REMARK 500 VAL B 98 75.16 -116.30 REMARK 500 GLU C 71 1.58 -66.44 REMARK 500 ASN C 92 61.06 -101.38 REMARK 500 LYS C 132 58.03 -140.52 REMARK 500 ASN D 92 59.35 -65.21 REMARK 500 ASP D 103 -37.28 -35.49 REMARK 500 ALA D 140 98.40 -45.63 REMARK 500 LYS E 3 117.40 66.16 REMARK 500 ASN E 92 55.67 -40.83 REMARK 500 ASP E 107 174.96 56.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN A 31 0.07 SIDE CHAIN REMARK 500 GLU A 71 0.14 SIDE CHAIN REMARK 500 GLU B 102 0.12 SIDE CHAIN REMARK 500 GLU B 134 0.37 SIDE CHAIN REMARK 500 PHE C 148 0.13 SIDE CHAIN REMARK 500 GLU D 124 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY B 141 64.06 REMARK 500 REMARK 500 REMARK: NULL DBREF 2B98 A 1 156 UNP Q58584 RISC_METJA 1 156 DBREF 2B98 B 1 156 UNP Q58584 RISC_METJA 1 156 DBREF 2B98 C 1 156 UNP Q58584 RISC_METJA 1 156 DBREF 2B98 D 1 156 UNP Q58584 RISC_METJA 1 156 DBREF 2B98 E 1 156 UNP Q58584 RISC_METJA 1 156 SEQRES 1 A 156 MET THR LYS LYS VAL GLY ILE VAL ASP THR THR PHE ALA SEQRES 2 A 156 ARG VAL ASP MET ALA SER ILE ALA ILE LYS LYS LEU LYS SEQRES 3 A 156 GLU LEU SER PRO ASN ILE LYS ILE ILE ARG LYS THR VAL SEQRES 4 A 156 PRO GLY ILE LYS ASP LEU PRO VAL ALA CYS LYS LYS LEU SEQRES 5 A 156 LEU GLU GLU GLU GLY CYS ASP ILE VAL MET ALA LEU GLY SEQRES 6 A 156 MET PRO GLY LYS ALA GLU LYS ASP LYS VAL CYS ALA HIS SEQRES 7 A 156 GLU ALA SER LEU GLY LEU MET LEU ALA GLN LEU MET THR SEQRES 8 A 156 ASN LYS HIS ILE ILE GLU VAL PHE VAL HIS GLU ASP GLU SEQRES 9 A 156 ALA LYS ASP ASP LYS GLU LEU ASP TRP LEU ALA LYS ARG SEQRES 10 A 156 ARG ALA GLU GLU HIS ALA GLU ASN VAL TYR TYR LEU LEU SEQRES 11 A 156 PHE LYS PRO GLU TYR LEU THR ARG MET ALA GLY LYS GLY SEQRES 12 A 156 LEU ARG GLN GLY PHE GLU ASP ALA GLY PRO ALA ARG GLU SEQRES 1 B 156 MET THR LYS LYS VAL GLY ILE VAL ASP THR THR PHE ALA SEQRES 2 B 156 ARG VAL ASP MET ALA SER ILE ALA ILE LYS LYS LEU LYS SEQRES 3 B 156 GLU LEU SER PRO ASN ILE LYS ILE ILE ARG LYS THR VAL SEQRES 4 B 156 PRO GLY ILE LYS ASP LEU PRO VAL ALA CYS LYS LYS LEU SEQRES 5 B 156 LEU GLU GLU GLU GLY CYS ASP ILE VAL MET ALA LEU GLY SEQRES 6 B 156 MET PRO GLY LYS ALA GLU LYS ASP LYS VAL CYS ALA HIS SEQRES 7 B 156 GLU ALA SER LEU GLY LEU MET LEU ALA GLN LEU MET THR SEQRES 8 B 156 ASN LYS HIS ILE ILE GLU VAL PHE VAL HIS GLU ASP GLU SEQRES 9 B 156 ALA LYS ASP ASP LYS GLU LEU ASP TRP LEU ALA LYS ARG SEQRES 10 B 156 ARG ALA GLU GLU HIS ALA GLU ASN VAL TYR TYR LEU LEU SEQRES 11 B 156 PHE LYS PRO GLU TYR LEU THR ARG MET ALA GLY LYS GLY SEQRES 12 B 156 LEU ARG GLN GLY PHE GLU ASP ALA GLY PRO ALA ARG GLU SEQRES 1 C 156 MET THR LYS LYS VAL GLY ILE VAL ASP THR THR PHE ALA SEQRES 2 C 156 ARG VAL ASP MET ALA SER ILE ALA ILE LYS LYS LEU LYS SEQRES 3 C 156 GLU LEU SER PRO ASN ILE LYS ILE ILE ARG LYS THR VAL SEQRES 4 C 156 PRO GLY ILE LYS ASP LEU PRO VAL ALA CYS LYS LYS LEU SEQRES 5 C 156 LEU GLU GLU GLU GLY CYS ASP ILE VAL MET ALA LEU GLY SEQRES 6 C 156 MET PRO GLY LYS ALA GLU LYS ASP LYS VAL CYS ALA HIS SEQRES 7 C 156 GLU ALA SER LEU GLY LEU MET LEU ALA GLN LEU MET THR SEQRES 8 C 156 ASN LYS HIS ILE ILE GLU VAL PHE VAL HIS GLU ASP GLU SEQRES 9 C 156 ALA LYS ASP ASP LYS GLU LEU ASP TRP LEU ALA LYS ARG SEQRES 10 C 156 ARG ALA GLU GLU HIS ALA GLU ASN VAL TYR TYR LEU LEU SEQRES 11 C 156 PHE LYS PRO GLU TYR LEU THR ARG MET ALA GLY LYS GLY SEQRES 12 C 156 LEU ARG GLN GLY PHE GLU ASP ALA GLY PRO ALA ARG GLU SEQRES 1 D 156 MET THR LYS LYS VAL GLY ILE VAL ASP THR THR PHE ALA SEQRES 2 D 156 ARG VAL ASP MET ALA SER ILE ALA ILE LYS LYS LEU LYS SEQRES 3 D 156 GLU LEU SER PRO ASN ILE LYS ILE ILE ARG LYS THR VAL SEQRES 4 D 156 PRO GLY ILE LYS ASP LEU PRO VAL ALA CYS LYS LYS LEU SEQRES 5 D 156 LEU GLU GLU GLU GLY CYS ASP ILE VAL MET ALA LEU GLY SEQRES 6 D 156 MET PRO GLY LYS ALA GLU LYS ASP LYS VAL CYS ALA HIS SEQRES 7 D 156 GLU ALA SER LEU GLY LEU MET LEU ALA GLN LEU MET THR SEQRES 8 D 156 ASN LYS HIS ILE ILE GLU VAL PHE VAL HIS GLU ASP GLU SEQRES 9 D 156 ALA LYS ASP ASP LYS GLU LEU ASP TRP LEU ALA LYS ARG SEQRES 10 D 156 ARG ALA GLU GLU HIS ALA GLU ASN VAL TYR TYR LEU LEU SEQRES 11 D 156 PHE LYS PRO GLU TYR LEU THR ARG MET ALA GLY LYS GLY SEQRES 12 D 156 LEU ARG GLN GLY PHE GLU ASP ALA GLY PRO ALA ARG GLU SEQRES 1 E 156 MET THR LYS LYS VAL GLY ILE VAL ASP THR THR PHE ALA SEQRES 2 E 156 ARG VAL ASP MET ALA SER ILE ALA ILE LYS LYS LEU LYS SEQRES 3 E 156 GLU LEU SER PRO ASN ILE LYS ILE ILE ARG LYS THR VAL SEQRES 4 E 156 PRO GLY ILE LYS ASP LEU PRO VAL ALA CYS LYS LYS LEU SEQRES 5 E 156 LEU GLU GLU GLU GLY CYS ASP ILE VAL MET ALA LEU GLY SEQRES 6 E 156 MET PRO GLY LYS ALA GLU LYS ASP LYS VAL CYS ALA HIS SEQRES 7 E 156 GLU ALA SER LEU GLY LEU MET LEU ALA GLN LEU MET THR SEQRES 8 E 156 ASN LYS HIS ILE ILE GLU VAL PHE VAL HIS GLU ASP GLU SEQRES 9 E 156 ALA LYS ASP ASP LYS GLU LEU ASP TRP LEU ALA LYS ARG SEQRES 10 E 156 ARG ALA GLU GLU HIS ALA GLU ASN VAL TYR TYR LEU LEU SEQRES 11 E 156 PHE LYS PRO GLU TYR LEU THR ARG MET ALA GLY LYS GLY SEQRES 12 E 156 LEU ARG GLN GLY PHE GLU ASP ALA GLY PRO ALA ARG GLU FORMUL 6 HOH *294(H2 O) HELIX 1 1 MET A 17 SER A 29 1 13 HELIX 2 2 GLY A 41 LYS A 43 5 3 HELIX 3 3 ASP A 44 GLU A 56 1 13 HELIX 4 4 ALA A 70 THR A 91 1 22 HELIX 5 5 HIS A 101 ALA A 105 5 5 HELIX 6 6 LYS A 106 LYS A 132 1 27 HELIX 7 7 LYS A 132 MET A 139 1 8 HELIX 8 8 MET B 17 SER B 29 1 13 HELIX 9 9 GLY B 41 LYS B 43 5 3 HELIX 10 10 ASP B 44 GLU B 56 1 13 HELIX 11 11 ALA B 70 THR B 91 1 22 HELIX 12 12 HIS B 101 ALA B 105 5 5 HELIX 13 13 ASP B 107 LYS B 132 1 26 HELIX 14 14 LYS B 132 MET B 139 1 8 HELIX 15 15 MET C 17 SER C 29 1 13 HELIX 16 16 GLY C 41 LYS C 43 5 3 HELIX 17 17 ASP C 44 GLU C 56 1 13 HELIX 18 18 LYS C 72 THR C 91 1 20 HELIX 19 19 HIS C 101 ALA C 105 5 5 HELIX 20 20 ASP C 107 LYS C 132 1 26 HELIX 21 21 LYS C 132 MET C 139 1 8 HELIX 22 22 MET D 17 SER D 29 1 13 HELIX 23 23 GLY D 41 LYS D 43 5 3 HELIX 24 24 ASP D 44 GLU D 56 1 13 HELIX 25 25 ALA D 70 THR D 91 1 22 HELIX 26 26 HIS D 101 ALA D 105 5 5 HELIX 27 27 ASP D 107 LYS D 132 1 26 HELIX 28 28 GLU D 134 MET D 139 1 6 HELIX 29 29 MET E 17 SER E 29 1 13 HELIX 30 30 GLY E 41 LYS E 43 5 3 HELIX 31 31 ASP E 44 GLU E 56 1 13 HELIX 32 32 ALA E 70 THR E 91 1 22 HELIX 33 33 HIS E 101 ALA E 105 5 5 HELIX 34 34 LYS E 106 LYS E 132 1 27 HELIX 35 35 LYS E 132 MET E 139 1 8 SHEET 1 A 4 LYS A 33 VAL A 39 0 SHEET 2 A 4 LYS A 4 THR A 10 1 N ILE A 7 O ILE A 35 SHEET 3 A 4 ILE A 60 GLY A 65 1 O LEU A 64 N VAL A 8 SHEET 4 A 4 ILE A 95 PHE A 99 1 O VAL A 98 N ALA A 63 SHEET 1 B 4 LYS B 33 VAL B 39 0 SHEET 2 B 4 LYS B 4 THR B 10 1 N VAL B 5 O LYS B 33 SHEET 3 B 4 ILE B 60 GLY B 65 1 O LEU B 64 N VAL B 8 SHEET 4 B 4 ILE B 95 PHE B 99 1 O VAL B 98 N ALA B 63 SHEET 1 C 4 LYS C 33 VAL C 39 0 SHEET 2 C 4 LYS C 4 THR C 10 1 N ASP C 9 O VAL C 39 SHEET 3 C 4 ILE C 60 GLY C 65 1 O LEU C 64 N VAL C 8 SHEET 4 C 4 ILE C 95 PHE C 99 1 O VAL C 98 N ALA C 63 SHEET 1 D 4 LYS D 33 VAL D 39 0 SHEET 2 D 4 LYS D 4 THR D 10 1 N ASP D 9 O VAL D 39 SHEET 3 D 4 ILE D 60 GLY D 65 1 O LEU D 64 N VAL D 8 SHEET 4 D 4 ILE D 95 PHE D 99 1 O VAL D 98 N ALA D 63 SHEET 1 E 4 LYS E 33 VAL E 39 0 SHEET 2 E 4 LYS E 4 THR E 10 1 N ILE E 7 O ILE E 35 SHEET 3 E 4 ILE E 60 GLY E 65 1 O LEU E 64 N VAL E 8 SHEET 4 E 4 ILE E 95 PHE E 99 1 O VAL E 98 N ALA E 63 CRYST1 41.773 72.692 72.698 68.48 74.61 74.90 P 1 5 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023939 -0.006458 -0.004772 0.00000 SCALE2 0.000000 0.014249 -0.004811 0.00000 SCALE3 0.000000 0.000000 0.015058 0.00000