HEADER TRANSFERASE 11-OCT-05 2B9E TITLE HUMAN NSUN5 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NOL1/NOP2/SUN DOMAIN FAMILY, MEMBER 5 ISOFORM 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P28A-LIC KEYWDS METHYTRANSFERASE, NOL1/NOP2/SUN DOMAIN FAMILY, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.MIN,H.WU,H.ZENG,P.LOPPNAU,M.SUNDSTROM,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 A.BOCHKAREV,A.N.PLOTNIKOV,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 23-AUG-23 2B9E 1 REMARK SEQADV REVDAT 4 24-FEB-09 2B9E 1 VERSN REVDAT 3 10-JUL-07 2B9E 1 SEQADV SEQRES REMARK MASTER REVDAT 2 21-MAR-06 2B9E 1 JRNL REVDAT 1 18-OCT-05 2B9E 0 JRNL AUTH J.R.MIN,H.WU,H.ZENG,P.LOPPNAU,M.SUNDSTROM,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,A.BOCHKAREV,A.N.PLOTNIKOV JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN NSUN5 PROTEIN IN COMPLEX WITH JRNL TITL 2 S-ADENOSYL-L-METHIONINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2038 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2782 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2127 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 432 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.638 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2208 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3004 ; 1.326 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 6.529 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;35.119 ;22.887 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 346 ;12.073 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;22.224 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1689 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1093 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1511 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 335 ; 0.117 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.244 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1412 ; 0.913 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2219 ; 1.571 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 877 ; 2.135 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 785 ; 3.314 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2B9E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034839. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38415 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 59.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1IXK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NSUN5 WAS COMPLEXED WITH S-ADENOSYL-L REMARK 280 -METHIONINE (SAM) (SIGMA) AT 1:10 MOLAR RATIO OF PROTEIN :SAM REMARK 280 AND CRYSTALLIZED USING THE SITTING DROP VAPOR DIFFUSION METHOD REMARK 280 AT 20 C BY MIXING 1 L OF THE PROTEIN SOLUTION WITH 1 L OF THE REMARK 280 RESERVOIR SOLUTION CONTAINING 10% ISO-PROPANOLE, 20% PEG 4000, REMARK 280 0.1M NA HEPES PH 7.5. , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.55533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 119.11067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 119.11067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.55533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1242 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1255 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1595 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 125 REMARK 465 SER A 126 REMARK 465 ARG A 127 REMARK 465 PRO A 128 REMARK 465 GLY A 129 REMARK 465 PRO A 130 REMARK 465 ALA A 131 REMARK 465 SER A 132 REMARK 465 SER A 311 REMARK 465 GLY A 312 REMARK 465 MET A 313 REMARK 465 PRO A 314 REMARK 465 SER A 315 REMARK 465 ARG A 316 REMARK 465 GLN A 317 REMARK 465 LEU A 318 REMARK 465 GLU A 319 REMARK 465 GLU A 320 REMARK 465 PRO A 321 REMARK 465 GLY A 322 REMARK 465 ALA A 323 REMARK 465 GLY A 324 REMARK 465 THR A 325 REMARK 465 PRO A 326 REMARK 465 SER A 327 REMARK 465 PRO A 328 REMARK 465 GLU A 426 REMARK 465 VAL A 427 REMARK 465 PRO A 428 REMARK 465 ARG A 429 REMARK 465 ARG A 430 REMARK 465 ALA A 431 REMARK 465 ARG A 432 REMARK 465 GLY A 433 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1347 O HOH A 1629 6555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 194 47.16 -96.82 REMARK 500 SER A 309 -92.85 -32.25 REMARK 500 ARG A 330 30.86 -93.46 REMARK 500 ASN A 366 -96.71 -121.84 REMARK 500 LEU A 387 72.32 27.14 REMARK 500 SER A 415 153.02 -47.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 330 LEU A 331 -146.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 1201 DBREF 2B9E A 127 429 UNP Q9NW70 Q9NW70_HUMAN 127 429 SEQADV 2B9E GLY A 125 GB 8922322 CLONING ARTIFACT SEQADV 2B9E SER A 126 GB 8922322 CLONING ARTIFACT SEQADV 2B9E ARG A 430 GB 8922322 CLONING ARTIFACT SEQADV 2B9E ALA A 431 GB 8922322 CLONING ARTIFACT SEQADV 2B9E ARG A 432 GB 8922322 CLONING ARTIFACT SEQADV 2B9E GLY A 433 GB 8922322 CLONING ARTIFACT SEQRES 1 A 309 GLY SER ARG PRO GLY PRO ALA SER GLN LEU PRO ARG PHE SEQRES 2 A 309 VAL ARG VAL ASN THR LEU LYS THR CYS SER ASP ASP VAL SEQRES 3 A 309 VAL ASP TYR PHE LYS ARG GLN GLY PHE SER TYR GLN GLY SEQRES 4 A 309 ARG ALA SER SER LEU ASP ASP LEU ARG ALA LEU LYS GLY SEQRES 5 A 309 LYS HIS PHE LEU LEU ASP PRO LEU MET PRO GLU LEU LEU SEQRES 6 A 309 VAL PHE PRO ALA GLN THR ASP LEU HIS GLU HIS PRO LEU SEQRES 7 A 309 TYR ARG ALA GLY HIS LEU ILE LEU GLN ASP ARG ALA SER SEQRES 8 A 309 CYS LEU PRO ALA MET LEU LEU ASP PRO PRO PRO GLY SER SEQRES 9 A 309 HIS VAL ILE ASP ALA CYS ALA ALA PRO GLY ASN LYS THR SEQRES 10 A 309 SER HIS LEU ALA ALA LEU LEU LYS ASN GLN GLY LYS ILE SEQRES 11 A 309 PHE ALA PHE ASP LEU ASP ALA LYS ARG LEU ALA SER MET SEQRES 12 A 309 ALA THR LEU LEU ALA ARG ALA GLY VAL SER CYS CYS GLU SEQRES 13 A 309 LEU ALA GLU GLU ASP PHE LEU ALA VAL SER PRO SER ASP SEQRES 14 A 309 PRO ARG TYR HIS GLU VAL HIS TYR ILE LEU LEU ASP PRO SEQRES 15 A 309 SER CYS SER GLY SER GLY MET PRO SER ARG GLN LEU GLU SEQRES 16 A 309 GLU PRO GLY ALA GLY THR PRO SER PRO VAL ARG LEU HIS SEQRES 17 A 309 ALA LEU ALA GLY PHE GLN GLN ARG ALA LEU CYS HIS ALA SEQRES 18 A 309 LEU THR PHE PRO SER LEU GLN ARG LEU VAL TYR SER THR SEQRES 19 A 309 CYS SER LEU CYS GLN GLU GLU ASN GLU ASP VAL VAL ARG SEQRES 20 A 309 ASP ALA LEU GLN GLN ASN PRO GLY ALA PHE ARG LEU ALA SEQRES 21 A 309 PRO ALA LEU PRO ALA TRP PRO HIS ARG GLY LEU SER THR SEQRES 22 A 309 PHE PRO GLY ALA GLU HIS CYS LEU ARG ALA SER PRO GLU SEQRES 23 A 309 THR THR LEU SER SER GLY PHE PHE VAL ALA VAL ILE GLU SEQRES 24 A 309 ARG VAL GLU VAL PRO ARG ARG ALA ARG GLY HET SAM A1201 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 HOH *432(H2 O) HELIX 1 1 CYS A 146 GLN A 157 1 12 HELIX 2 2 SER A 167 ALA A 173 1 7 HELIX 3 3 HIS A 200 ALA A 205 1 6 HELIX 4 4 ARG A 213 SER A 215 5 3 HELIX 5 5 CYS A 216 ASP A 223 1 8 HELIX 6 6 GLY A 238 LYS A 249 1 12 HELIX 7 7 ASP A 260 ALA A 274 1 15 HELIX 8 8 ASP A 285 VAL A 289 5 5 HELIX 9 9 ASP A 293 HIS A 297 5 5 HELIX 10 10 ARG A 330 LEU A 346 1 17 HELIX 11 11 CYS A 362 GLU A 365 5 4 HELIX 12 12 ASN A 366 GLN A 375 1 10 HELIX 13 13 GLY A 400 CYS A 404 5 5 HELIX 14 14 SER A 408 LEU A 413 1 6 SHEET 1 A 5 SER A 160 ARG A 164 0 SHEET 2 A 5 HIS A 178 LEU A 181 1 O PHE A 179 N GLN A 162 SHEET 3 A 5 LEU A 188 PHE A 191 -1 O VAL A 190 N LEU A 180 SHEET 4 A 5 ARG A 136 VAL A 140 -1 N VAL A 138 O LEU A 189 SHEET 5 A 5 LEU A 208 LEU A 210 -1 O ILE A 209 N ARG A 139 SHEET 1 B 7 CYS A 279 GLU A 283 0 SHEET 2 B 7 LYS A 253 ASP A 258 1 N ILE A 254 O GLU A 280 SHEET 3 B 7 HIS A 229 ASP A 232 1 N VAL A 230 O PHE A 255 SHEET 4 B 7 VAL A 299 LEU A 304 1 O LEU A 303 N ILE A 231 SHEET 5 B 7 ARG A 353 THR A 358 1 O VAL A 355 N LEU A 304 SHEET 6 B 7 PHE A 417 ARG A 424 -1 O ILE A 422 N LEU A 354 SHEET 7 B 7 PHE A 381 LEU A 383 -1 N ARG A 382 O GLU A 423 SHEET 1 C 7 CYS A 279 GLU A 283 0 SHEET 2 C 7 LYS A 253 ASP A 258 1 N ILE A 254 O GLU A 280 SHEET 3 C 7 HIS A 229 ASP A 232 1 N VAL A 230 O PHE A 255 SHEET 4 C 7 VAL A 299 LEU A 304 1 O LEU A 303 N ILE A 231 SHEET 5 C 7 ARG A 353 THR A 358 1 O VAL A 355 N LEU A 304 SHEET 6 C 7 PHE A 417 ARG A 424 -1 O ILE A 422 N LEU A 354 SHEET 7 C 7 LEU A 405 ALA A 407 -1 N LEU A 405 O VAL A 419 CISPEP 1 ALA A 236 PRO A 237 0 4.92 SITE 1 AC1 23 ALA A 233 CYS A 234 ALA A 235 ALA A 236 SITE 2 AC1 23 PRO A 237 GLY A 238 ASN A 239 LYS A 240 SITE 3 AC1 23 ASP A 258 LEU A 259 ASP A 260 ARG A 263 SITE 4 AC1 23 GLU A 284 ASP A 285 PHE A 286 ASP A 305 SITE 5 AC1 23 SER A 307 PHE A 337 HOH A1210 HOH A1361 SITE 6 AC1 23 HOH A1376 HOH A1413 HOH A1442 CRYST1 56.289 56.289 178.666 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017765 0.010257 0.000000 0.00000 SCALE2 0.000000 0.020514 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005597 0.00000