HEADER TRANSFERASE 17-OCT-05 2BB3 TITLE CRYSTAL STRUCTURE OF COBALAMIN BIOSYNTHESIS PRECORRIN-6Y METHYLASE TITLE 2 (CBIE) FROM ARCHAEOGLOBUS FULGIDUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: COBALAMIN BIOSYNTHESIS PRECORRIN-6Y METHYLASE (CBIE); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CBIE; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: DSM 4304; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BETA, ALPHA-BETA-ALPHA SANDWICH, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,A.JOACHIMIAK,X.XU,A.SAVCHENKO,A.EDWARDS,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 13-JUL-11 2BB3 1 VERSN REVDAT 3 24-FEB-09 2BB3 1 VERSN REVDAT 2 06-DEC-05 2BB3 1 JRNL REVDAT 1 29-NOV-05 2BB3 0 JRNL AUTH Y.KIM,X.XU,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF COBALAMIN BIOSYNTHESIS PRECORRIN-6Y JRNL TITL 2 METHYLASE (CBIE) FROM ARCHAEOGLOBUS FULGIDUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1862364.670 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 19665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1985 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2358 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 260 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3043 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.83000 REMARK 3 B22 (A**2) : 2.88000 REMARK 3 B33 (A**2) : -4.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.28 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.97 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.100 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.580 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.810 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.360 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 40.79 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : SAH.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : SAH.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-05. REMARK 100 THE RCSB ID CODE IS RCSB034896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR, REMARK 200 SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22771 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 44.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 11.000 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, 11% PEG10K, 2% REMARK 280 ISO-PROPANOL,10MM SAH, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.96600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.96600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.09550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.20900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.09550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.20900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.96600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.09550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.20900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.96600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.09550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.20900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE AUTHORS STATE THE REMARK 300 BIOLOGICAL UNIT COULD BE A DIMER. THE ASYMMETRIC UNIT REMARK 300 CONTAINS TWO "HALF DIMERS". REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 57.96600 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 115.93200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 288 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 HIS A 124 REMARK 465 ALA A 125 REMARK 465 LYS A 126 REMARK 465 ASP A 127 REMARK 465 MSE A 196 REMARK 465 GLU A 197 REMARK 465 GLY A 198 REMARK 465 SER A 199 REMARK 465 MSE B -21 REMARK 465 GLY B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 GLY B -9 REMARK 465 ARG B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 SER B -2 REMARK 465 ALA B 125 REMARK 465 LYS B 126 REMARK 465 ASP B 127 REMARK 465 PHE B 128 REMARK 465 ASP B 129 REMARK 465 MSE B 196 REMARK 465 GLU B 197 REMARK 465 GLY B 198 REMARK 465 SER B 199 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 110 O HOH A 257 2.11 REMARK 500 O GLN A 13 O HOH A 254 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 410 O HOH B 410 4556 1.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 78 34.33 -97.85 REMARK 500 GLU A 91 97.85 -65.59 REMARK 500 ASP A 92 -63.04 -96.99 REMARK 500 LEU A 132 -87.41 -89.70 REMARK 500 GLU A 134 -72.63 -60.75 REMARK 500 GLU A 152 -75.35 -45.88 REMARK 500 ARG A 153 1.48 -53.80 REMARK 500 GLU A 183 -12.63 -146.85 REMARK 500 TYR A 186 72.12 -112.55 REMARK 500 HIS B 0 78.89 -102.72 REMARK 500 LEU B 132 -75.06 -102.81 REMARK 500 GLU B 134 -71.01 -69.41 REMARK 500 GLU B 183 -18.11 -143.32 REMARK 500 TYR B 186 72.18 -115.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 CYS B 123 24.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 284 DISTANCE = 5.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5543 RELATED DB: TARGETDB DBREF 2BB3 A 1 197 UNP O29536 O29536_ARCFU 1 197 DBREF 2BB3 B 1 197 UNP O29536 O29536_ARCFU 1 197 SEQADV 2BB3 MSE A -21 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 GLY A -20 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 SER A -19 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 SER A -18 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 HIS A -17 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 HIS A -16 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 HIS A -15 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 HIS A -14 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 HIS A -13 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 HIS A -12 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 SER A -11 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 SER A -10 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 GLY A -9 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 ARG A -8 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 GLU A -7 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 ASN A -6 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 LEU A -5 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 TYR A -4 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 PHE A -3 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 SER A -2 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 GLY A -1 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 HIS A 0 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 MSE A 1 UNP O29536 MET 1 MODIFIED RESIDUE SEQADV 2BB3 MSE A 61 UNP O29536 MET 61 MODIFIED RESIDUE SEQADV 2BB3 MSE A 78 UNP O29536 MET 78 MODIFIED RESIDUE SEQADV 2BB3 MSE A 167 UNP O29536 MET 167 MODIFIED RESIDUE SEQADV 2BB3 MSE A 196 UNP O29536 MET 196 MODIFIED RESIDUE SEQADV 2BB3 GLY A 198 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 SER A 199 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 MSE B -21 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 GLY B -20 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 SER B -19 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 SER B -18 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 HIS B -17 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 HIS B -16 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 HIS B -15 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 HIS B -14 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 HIS B -13 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 HIS B -12 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 SER B -11 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 SER B -10 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 GLY B -9 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 ARG B -8 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 GLU B -7 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 ASN B -6 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 LEU B -5 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 TYR B -4 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 PHE B -3 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 SER B -2 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 GLY B -1 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 HIS B 0 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 MSE B 1 UNP O29536 MET 1 MODIFIED RESIDUE SEQADV 2BB3 MSE B 61 UNP O29536 MET 61 MODIFIED RESIDUE SEQADV 2BB3 MSE B 78 UNP O29536 MET 78 MODIFIED RESIDUE SEQADV 2BB3 MSE B 167 UNP O29536 MET 167 MODIFIED RESIDUE SEQADV 2BB3 MSE B 196 UNP O29536 MET 196 MODIFIED RESIDUE SEQADV 2BB3 GLY B 198 UNP O29536 CLONING ARTIFACT SEQADV 2BB3 SER B 199 UNP O29536 CLONING ARTIFACT SEQRES 1 A 221 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 221 ARG GLU ASN LEU TYR PHE SER GLY HIS MSE ILE TRP ILE SEQRES 3 A 221 VAL GLY SER GLY THR CYS ARG GLY GLN THR THR GLU ARG SEQRES 4 A 221 ALA LYS GLU ILE ILE GLU ARG ALA GLU VAL ILE TYR GLY SEQRES 5 A 221 SER ARG ARG ALA LEU GLU LEU ALA GLY VAL VAL ASP ASP SEQRES 6 A 221 SER ARG ALA ARG ILE LEU ARG SER PHE LYS GLY ASP GLU SEQRES 7 A 221 ILE ARG ARG ILE MSE GLU GLU GLY ARG GLU ARG GLU VAL SEQRES 8 A 221 ALA VAL ILE SER THR GLY ASP PRO MSE VAL ALA GLY LEU SEQRES 9 A 221 GLY ARG VAL LEU ARG GLU ILE ALA GLU ASP VAL GLU ILE SEQRES 10 A 221 LYS ILE GLU PRO ALA ILE SER SER VAL GLN VAL ALA LEU SEQRES 11 A 221 ALA ARG LEU LYS VAL ASP LEU SER GLU VAL ALA VAL VAL SEQRES 12 A 221 ASP CYS HIS ALA LYS ASP PHE ASP ALA GLU LEU THR GLU SEQRES 13 A 221 LEU LEU LYS TYR ARG HIS LEU LEU ILE LEU ALA ASP SER SEQRES 14 A 221 HIS PHE PRO LEU GLU ARG LEU GLY LYS ARG ARG VAL VAL SEQRES 15 A 221 LEU LEU GLU ASN LEU CYS MSE GLU GLY GLU ARG ILE ARG SEQRES 16 A 221 GLU GLY ASN ALA ASP SER ILE GLU LEU GLU SER ASP TYR SEQRES 17 A 221 THR ILE ILE PHE VAL GLU ARG GLU VAL MSE GLU GLY SER SEQRES 1 B 221 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 221 ARG GLU ASN LEU TYR PHE SER GLY HIS MSE ILE TRP ILE SEQRES 3 B 221 VAL GLY SER GLY THR CYS ARG GLY GLN THR THR GLU ARG SEQRES 4 B 221 ALA LYS GLU ILE ILE GLU ARG ALA GLU VAL ILE TYR GLY SEQRES 5 B 221 SER ARG ARG ALA LEU GLU LEU ALA GLY VAL VAL ASP ASP SEQRES 6 B 221 SER ARG ALA ARG ILE LEU ARG SER PHE LYS GLY ASP GLU SEQRES 7 B 221 ILE ARG ARG ILE MSE GLU GLU GLY ARG GLU ARG GLU VAL SEQRES 8 B 221 ALA VAL ILE SER THR GLY ASP PRO MSE VAL ALA GLY LEU SEQRES 9 B 221 GLY ARG VAL LEU ARG GLU ILE ALA GLU ASP VAL GLU ILE SEQRES 10 B 221 LYS ILE GLU PRO ALA ILE SER SER VAL GLN VAL ALA LEU SEQRES 11 B 221 ALA ARG LEU LYS VAL ASP LEU SER GLU VAL ALA VAL VAL SEQRES 12 B 221 ASP CYS HIS ALA LYS ASP PHE ASP ALA GLU LEU THR GLU SEQRES 13 B 221 LEU LEU LYS TYR ARG HIS LEU LEU ILE LEU ALA ASP SER SEQRES 14 B 221 HIS PHE PRO LEU GLU ARG LEU GLY LYS ARG ARG VAL VAL SEQRES 15 B 221 LEU LEU GLU ASN LEU CYS MSE GLU GLY GLU ARG ILE ARG SEQRES 16 B 221 GLU GLY ASN ALA ASP SER ILE GLU LEU GLU SER ASP TYR SEQRES 17 B 221 THR ILE ILE PHE VAL GLU ARG GLU VAL MSE GLU GLY SER MODRES 2BB3 MSE A 1 MET SELENOMETHIONINE MODRES 2BB3 MSE A 61 MET SELENOMETHIONINE MODRES 2BB3 MSE A 78 MET SELENOMETHIONINE MODRES 2BB3 MSE A 167 MET SELENOMETHIONINE MODRES 2BB3 MSE B 1 MET SELENOMETHIONINE MODRES 2BB3 MSE B 61 MET SELENOMETHIONINE MODRES 2BB3 MSE B 78 MET SELENOMETHIONINE MODRES 2BB3 MSE B 167 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 61 8 HET MSE A 78 8 HET MSE A 167 8 HET MSE B 1 8 HET MSE B 61 8 HET MSE B 78 8 HET MSE B 167 8 HET SAH A 201 26 HET SAH B 203 26 HETNAM MSE SELENOMETHIONINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 5 HOH *180(H2 O) HELIX 1 1 THR A 15 ALA A 25 1 11 HELIX 2 2 SER A 31 ALA A 38 1 8 HELIX 3 3 LYS A 53 ARG A 67 1 15 HELIX 4 4 LEU A 82 GLU A 88 1 7 HELIX 5 5 SER A 102 LYS A 112 1 11 HELIX 6 6 ASP A 114 SER A 116 5 3 HELIX 7 7 ASP A 129 GLU A 134 1 6 HELIX 8 8 GLU A 134 ARG A 139 1 6 HELIX 9 9 LEU A 151 GLY A 155 5 5 HELIX 10 10 THR B 15 ALA B 25 1 11 HELIX 11 11 SER B 31 ALA B 38 1 8 HELIX 12 12 LYS B 53 ARG B 67 1 15 HELIX 13 13 LEU B 82 ARG B 87 1 6 HELIX 14 14 SER B 102 LYS B 112 1 11 HELIX 15 15 ASP B 114 SER B 116 5 3 HELIX 16 16 GLU B 134 TYR B 138 5 5 HELIX 17 17 PRO B 150 GLY B 155 5 6 HELIX 18 18 ASP B 178 ILE B 180 5 3 SHEET 1 A 5 ALA A 46 ILE A 48 0 SHEET 2 A 5 VAL A 27 GLY A 30 1 N ILE A 28 O ARG A 47 SHEET 3 A 5 VAL A 69 SER A 73 1 O ALA A 70 N TYR A 29 SHEET 4 A 5 MSE A 1 GLY A 6 1 N VAL A 5 O VAL A 71 SHEET 5 A 5 GLU A 94 GLU A 98 1 O GLU A 98 N ILE A 4 SHEET 1 B 5 VAL A 118 ASP A 122 0 SHEET 2 B 5 HIS A 140 ALA A 145 1 O LEU A 144 N VAL A 121 SHEET 3 B 5 THR A 187 VAL A 191 -1 O THR A 187 N ALA A 145 SHEET 4 B 5 ARG A 158 GLU A 163 -1 N VAL A 160 O PHE A 190 SHEET 5 B 5 ARG A 171 ASN A 176 -1 O GLY A 175 N VAL A 159 SHEET 1 C 5 ALA B 46 ILE B 48 0 SHEET 2 C 5 VAL B 27 GLY B 30 1 N ILE B 28 O ARG B 247 SHEET 3 C 5 VAL B 69 SER B 73 1 O ILE B 72 N TYR B 29 SHEET 4 C 5 MSE B 1 GLY B 6 1 N VAL B 5 O VAL B 71 SHEET 5 C 5 GLU B 94 GLU B 98 1 O GLU B 98 N ILE B 4 SHEET 1 D 5 VAL B 118 ASP B 122 0 SHEET 2 D 5 HIS B 140 ALA B 145 1 O LEU B 144 N VAL B 121 SHEET 3 D 5 THR B 187 VAL B 191 -1 O THR B 187 N ALA B 145 SHEET 4 D 5 ARG B 158 GLU B 163 -1 N VAL B 160 O PHE B 190 SHEET 5 D 5 ARG B 171 ASN B 176 -1 O GLY B 175 N VAL B 159 SSBOND 1 CYS A 10 CYS A 166 1555 1555 2.02 SSBOND 2 CYS B 10 CYS B 166 1555 1555 2.02 LINK C HIS A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C ILE A 60 N MSE A 61 1555 1555 1.33 LINK C MSE A 61 N GLU A 62 1555 1555 1.33 LINK C PRO A 77 N MSE A 78 1555 1555 1.32 LINK C MSE A 78 N VAL A 79 1555 1555 1.33 LINK C CYS A 166 N MSE A 167 1555 1555 1.32 LINK C MSE A 167 N AGLU A 168 1555 1555 1.32 LINK C MSE A 167 N BGLU A 168 1555 1555 1.34 LINK C HIS B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N ILE B 2 1555 1555 1.33 LINK C ILE B 60 N MSE B 61 1555 1555 1.33 LINK C MSE B 61 N GLU B 62 1555 1555 1.33 LINK C PRO B 77 N MSE B 78 1555 1555 1.32 LINK C MSE B 78 N VAL B 79 1555 1555 1.34 LINK C CYS B 166 N MSE B 167 1555 1555 1.32 LINK C MSE B 167 N BGLU B 368 1555 1555 1.32 LINK C MSE B 167 N AGLU B 368 1555 1555 1.33 SITE 1 AC1 19 THR A 74 GLY A 75 ASP A 76 VAL A 79 SITE 2 AC1 19 ALA A 80 SER A 102 SER A 103 LEU A 144 SITE 3 AC1 19 ALA A 145 LEU A 165 MSE A 167 ASP A 185 SITE 4 AC1 19 TYR A 186 THR A 187 ILE A 188 HOH A 208 SITE 5 AC1 19 HOH A 213 HOH A 225 HOH A 292 SITE 1 AC2 17 THR B 74 GLY B 75 ASP B 76 VAL B 79 SITE 2 AC2 17 ALA B 80 SER B 102 SER B 103 LEU B 144 SITE 3 AC2 17 ALA B 145 LEU B 162 LEU B 165 MSE B 167 SITE 4 AC2 17 ASP B 185 TYR B 186 THR B 187 ILE B 188 SITE 5 AC2 17 HOH B 376 CRYST1 88.191 88.418 115.932 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011339 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008626 0.00000