HEADER ELECTRON TRANSPORT 17-DEC-93 2BBK TITLE CRYSTAL STRUCTURE OF THE QUINOPROTEIN METHYLAMINE TITLE 2 DEHYDROGENASE FROM PARACOCCUS DENITRIFICANS AT 1.75 TITLE 3 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT); COMPND 3 CHAIN: H, J; COMPND 4 EC: 1.4.99.3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: METHYLAMINE DEHYDROGENASE (LIGHT SUBUNIT); COMPND 8 CHAIN: L, M; COMPND 9 EC: 1.4.99.3; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 266; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 6 ORGANISM_TAXID: 266 KEYWDS ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR L.CHEN,F.S.MATHEWS REVDAT 2 24-FEB-09 2BBK 1 VERSN REVDAT 1 31-JAN-94 2BBK 0 JRNL AUTH L.CHEN,M.DOI,R.C.DURLEY,A.Y.CHISTOSERDOV, JRNL AUTH 2 M.E.LIDSTROM,V.L.DAVIDSON,F.S.MATHEWS JRNL TITL REFINED CRYSTAL STRUCTURE OF METHYLAMINE JRNL TITL 2 DEHYDROGENASE FROM PARACOCCUS DENITRIFICANS AT JRNL TITL 3 1.75 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 276 131 1998 JRNL REFN ISSN 0022-2836 JRNL PMID 9514722 JRNL DOI 10.1006/JMBI.1997.1511 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.CHEN,F.S.MATHEWS,V.L.DAVIDSON,E.G.HUIZINGA, REMARK 1 AUTH 2 F.M.D.VELLIEUX,W.G.J.HOL REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF THE QUINOPROTEIN REMARK 1 TITL 2 METHYLAMINE DEHYDROGENASE FROM PARACOCCUS REMARK 1 TITL 3 DENITRIFICANS DETERMINED BY MOLECULAR REPLACEMENT REMARK 1 TITL 4 AT 2.8 ANGSTROMS RESOLUTION REMARK 1 REF PROTEINS V. 14 288 1992 REMARK 1 REFN ISSN 0887-3585 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.Y.CHISTOSERDOV,J.BOYD,F.S.MATHEWS,M.E.LIDSTROM REMARK 1 TITL THE GENETIC ORGANIZATION OF THE MAU GENE CLUSTER REMARK 1 TITL 2 OF THE FACULTATIVE AUTOTROPH PARACOCCUS REMARK 1 TITL 3 DENITRIFICANS REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 184 1181 1992 REMARK 1 REFN ISSN 0006-291X REMARK 1 REFERENCE 3 REMARK 1 AUTH L.CHEN,F.S.MATHEWS,V.L.DAVIDSON,E.G.HUIZINGA, REMARK 1 AUTH 2 F.M.D.VELLIEUX,J.A.DUINE,W.G.J.HOL REMARK 1 TITL CRYSTALLOGRAPHIC INVESTIGATIONS OF THE REMARK 1 TITL 2 TRYPTOPHAN-DERIVED COFACTOR IN THE QUINOPROTEIN REMARK 1 TITL 3 METHYLAMINE DEHYDROGENASE REMARK 1 REF FEBS LETT. V. 287 163 1991 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 4 REMARK 1 AUTH F.M.D.VELLIEUX,F.HUITEMA,H.GROENDIJK,K.H.KALK, REMARK 1 AUTH 2 J.FRANK JZN.,J.A.JONGEJAN,J.A.DUINE,K.PETRATOS, REMARK 1 AUTH 3 J.DRENTH,W.G.J.HOL REMARK 1 TITL STRUCTURE OF QUINOPROTEIN METHYLAMINE REMARK 1 TITL 2 DEHYDROGENASE AT 2.25 ANGSTROMS RESOLUTION REMARK 1 REF EMBO J. V. 8 2171 1989 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 11.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.700 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 111755 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7482 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 556 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.007 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.300 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE SG ATOMS OF RESIDUES CYS L 23, REMARK 3 CYS L 88, CYS M 23, AND CYS M 88 EACH ARE PRESENTED IN TWO REMARK 3 ALTERNATE CONFORMATIONS. DURING REFINEMENT, THE OCCUPANCY WAS REMARK 3 LEFT AT 1.0 FOR EACH CONFORMATION WHILE THE B VALUES WERE REMARK 3 REFINED. IN THIS ENTRY, THE OCCUPANCY OF THESE ATOMS HAS BEEN REMARK 3 SET ARBITRARILY TO 0.5. REMARK 4 REMARK 4 2BBK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 76.03500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.63000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.96000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.63000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 76.03500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.96000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: REMARK 300 THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR CHAINS H AND L WHEN REMARK 300 APPLIED TO CHAINS J AND M, RESPECTIVELY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, J, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE3 TRP L 13 O HOH L 199 1.41 REMARK 500 CE3 TRP M 13 O HOH M 207 1.62 REMARK 500 CZ3 TRP L 13 O HOH L 199 2.05 REMARK 500 OD2 ASP L 76 O HOH L 198 2.10 REMARK 500 OD2 ASP M 76 O HOH M 206 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE H 193 C GLY H 194 N -0.322 REMARK 500 GLU H 200 CD GLU H 200 OE2 0.067 REMARK 500 GLU H 205 CD GLU H 205 OE1 0.068 REMARK 500 GLU H 290 CD GLU H 290 OE1 0.071 REMARK 500 GLU H 329 CD GLU H 329 OE2 0.069 REMARK 500 GLU H 352 CD GLU H 352 OE1 0.073 REMARK 500 GLU L 92 CD GLU L 92 OE2 0.068 REMARK 500 GLU J 257 CD GLU J 257 OE1 0.069 REMARK 500 GLU J 349 CD GLU J 349 OE1 0.068 REMARK 500 GLU J 352 CD GLU J 352 OE1 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP H 30 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP H 38 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP H 116 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP H 116 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG H 119 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG H 119 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP H 164 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP H 164 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 GLU H 196 O - C - N ANGL. DEV. = -10.7 DEGREES REMARK 500 ASP H 211 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP H 211 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP H 240 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP H 240 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP H 245 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG H 260 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG H 265 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG H 276 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG H 292 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP H 304 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP H 321 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP H 321 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP H 340 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP H 347 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP H 347 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP H 371 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP H 371 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP L 76 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP L 76 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 CYS L 88 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP L 105 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP L 105 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP J 63 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP J 63 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP J 74 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP J 96 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP J 116 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG J 119 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG J 161 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP J 164 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP J 185 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP J 185 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 THR J 195 N - CA - C ANGL. DEV. = -21.0 DEGREES REMARK 500 ASP J 240 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP J 262 CB - CG - OD1 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP J 262 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG J 288 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG J 292 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP J 304 CB - CG - OD1 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP J 321 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG M 10 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 60 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE H 89 -69.96 70.30 REMARK 500 ALA H 117 65.81 36.90 REMARK 500 HIS H 170 159.26 75.24 REMARK 500 THR H 195 22.07 42.47 REMARK 500 GLU H 196 127.53 162.15 REMARK 500 TRP H 269 -88.22 -108.74 REMARK 500 ASP H 286 -178.66 -171.48 REMARK 500 SER L 30 35.00 -143.95 REMARK 500 THR L 91 46.10 -140.87 REMARK 500 ILE J 89 -69.13 67.27 REMARK 500 PRO J 166 -167.88 -75.61 REMARK 500 HIS J 170 159.15 79.54 REMARK 500 THR J 195 77.02 -171.05 REMARK 500 GLU J 196 168.76 -43.86 REMARK 500 TRP J 269 -85.04 -110.29 REMARK 500 GLN J 365 -23.73 -140.04 REMARK 500 SER M 30 33.57 -140.73 REMARK 500 THR M 91 40.09 -141.34 REMARK 500 ASP M 114 17.56 59.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE H 193 GLY H 194 -141.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE REDOX CENTERS OF MADH ARE LOCATED ON EACH L SUBUNIT. REMARK 600 EACH IS COMPOSED OF THE SIDE CHAINS OF TWO TRYPTOPHANS ON REMARK 600 THE L SUBUNIT, LINKED BY COVALENT BOND BETWEEN TWO INDOLE REMARK 600 RINGS. ONE INDOLE RING HAS AN ORTHO-QUINONE STRUCTURE. REMARK 600 THIS DOUBLE-TRYPTOPHAN SYSTEM IS CALLED TRYPTOPHAN REMARK 600 TRYPTOPHYL-QUINONE (TTQ). RESIDUE 57 OF CHAINS L AND M IS REMARK 600 ACTUALLY TRYPTOPHYLQUINONE. THE ADDITIONAL OXYGEN ATOMS REMARK 600 ARE PRESENTED AS RESIDUE OWQ AT THE END OF THE CHAINS. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: TQL REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 SITE_IDENTIFIER: TQM REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL DBREF 2BBK H 19 373 UNP P29894 DHMH_PARDE 63 417 DBREF 2BBK L 7 131 UNP P22619 DHML_PARDE 64 188 DBREF 2BBK J 19 373 UNP P29894 DHMH_PARDE 63 417 DBREF 2BBK M 7 131 UNP P22619 DHML_PARDE 64 188 SEQADV 2BBK PHE H 299 UNP P29894 LEU 343 CONFLICT SEQADV 2BBK VAL H 300 UNP P29894 LEU 344 CONFLICT SEQADV 2BBK TRQ L 57 UNP P22619 TRP 114 CONFLICT SEQADV 2BBK PHE J 299 UNP P29894 LEU 343 CONFLICT SEQADV 2BBK VAL J 300 UNP P29894 LEU 344 CONFLICT SEQADV 2BBK TRQ M 57 UNP P22619 TRP 114 CONFLICT SEQRES 1 H 355 ASP GLU PRO ARG ILE LEU GLU ALA PRO ALA PRO ASP ALA SEQRES 2 H 355 ARG ARG VAL TYR VAL ASN ASP PRO ALA HIS PHE ALA ALA SEQRES 3 H 355 VAL THR GLN GLN PHE VAL ILE ASP GLY GLU ALA GLY ARG SEQRES 4 H 355 VAL ILE GLY MET ILE ASP GLY GLY PHE LEU PRO ASN PRO SEQRES 5 H 355 VAL VAL ALA ASP ASP GLY SER PHE ILE ALA HIS ALA SER SEQRES 6 H 355 THR VAL PHE SER ARG ILE ALA ARG GLY GLU ARG THR ASP SEQRES 7 H 355 TYR VAL GLU VAL PHE ASP PRO VAL THR LEU LEU PRO THR SEQRES 8 H 355 ALA ASP ILE GLU LEU PRO ASP ALA PRO ARG PHE LEU VAL SEQRES 9 H 355 GLY THR TYR PRO TRP MET THR SER LEU THR PRO ASP GLY SEQRES 10 H 355 LYS THR LEU LEU PHE TYR GLN PHE SER PRO ALA PRO ALA SEQRES 11 H 355 VAL GLY VAL VAL ASP LEU GLU GLY LYS ALA PHE LYS ARG SEQRES 12 H 355 MET LEU ASP VAL PRO ASP CYS TYR HIS ILE PHE PRO THR SEQRES 13 H 355 ALA PRO ASP THR PHE PHE MET HIS CYS ARG ASP GLY SER SEQRES 14 H 355 LEU ALA LYS VAL ALA PHE GLY THR GLU GLY THR PRO GLU SEQRES 15 H 355 ILE THR HIS THR GLU VAL PHE HIS PRO GLU ASP GLU PHE SEQRES 16 H 355 LEU ILE ASN HIS PRO ALA TYR SER GLN LYS ALA GLY ARG SEQRES 17 H 355 LEU VAL TRP PRO THR TYR THR GLY LYS ILE HIS GLN ILE SEQRES 18 H 355 ASP LEU SER SER GLY ASP ALA LYS PHE LEU PRO ALA VAL SEQRES 19 H 355 GLU ALA LEU THR GLU ALA GLU ARG ALA ASP GLY TRP ARG SEQRES 20 H 355 PRO GLY GLY TRP GLN GLN VAL ALA TYR HIS ARG ALA LEU SEQRES 21 H 355 ASP ARG ILE TYR LEU LEU VAL ASP GLN ARG ASP GLU TRP SEQRES 22 H 355 ARG HIS LYS THR ALA SER ARG PHE VAL VAL VAL LEU ASP SEQRES 23 H 355 ALA LYS THR GLY GLU ARG LEU ALA LYS PHE GLU MET GLY SEQRES 24 H 355 HIS GLU ILE ASP SER ILE ASN VAL SER GLN ASP GLU LYS SEQRES 25 H 355 PRO LEU LEU TYR ALA LEU SER THR GLY ASP LYS THR LEU SEQRES 26 H 355 TYR ILE HIS ASP ALA GLU SER GLY GLU GLU LEU ARG SER SEQRES 27 H 355 VAL ASN GLN LEU GLY HIS GLY PRO GLN VAL ILE THR THR SEQRES 28 H 355 ALA ASP MET GLY SEQRES 1 L 125 THR ASP PRO ARG ALA LYS TRP VAL PRO GLN ASP ASN ASP SEQRES 2 L 125 ILE GLN ALA CYS ASP TYR TRP ARG HIS CYS SER ILE ASP SEQRES 3 L 125 GLY ASN ILE CYS ASP CYS SER GLY GLY SER LEU THR ASN SEQRES 4 L 125 CYS PRO PRO GLY THR LYS LEU ALA THR ALA SER TRQ VAL SEQRES 5 L 125 ALA SER CYS TYR ASN PRO THR ASP GLY GLN SER TYR LEU SEQRES 6 L 125 ILE ALA TYR ARG ASP CYS CYS GLY TYR ASN VAL SER GLY SEQRES 7 L 125 ARG CYS PRO CYS LEU ASN THR GLU GLY GLU LEU PRO VAL SEQRES 8 L 125 TYR ARG PRO GLU PHE ALA ASN ASP ILE ILE TRP CYS PHE SEQRES 9 L 125 GLY ALA GLU ASP ASP ALA MET THR TYR HIS CYS THR ILE SEQRES 10 L 125 SER PRO ILE VAL GLY LYS ALA SER SEQRES 1 J 355 ASP GLU PRO ARG ILE LEU GLU ALA PRO ALA PRO ASP ALA SEQRES 2 J 355 ARG ARG VAL TYR VAL ASN ASP PRO ALA HIS PHE ALA ALA SEQRES 3 J 355 VAL THR GLN GLN PHE VAL ILE ASP GLY GLU ALA GLY ARG SEQRES 4 J 355 VAL ILE GLY MET ILE ASP GLY GLY PHE LEU PRO ASN PRO SEQRES 5 J 355 VAL VAL ALA ASP ASP GLY SER PHE ILE ALA HIS ALA SER SEQRES 6 J 355 THR VAL PHE SER ARG ILE ALA ARG GLY GLU ARG THR ASP SEQRES 7 J 355 TYR VAL GLU VAL PHE ASP PRO VAL THR LEU LEU PRO THR SEQRES 8 J 355 ALA ASP ILE GLU LEU PRO ASP ALA PRO ARG PHE LEU VAL SEQRES 9 J 355 GLY THR TYR PRO TRP MET THR SER LEU THR PRO ASP GLY SEQRES 10 J 355 LYS THR LEU LEU PHE TYR GLN PHE SER PRO ALA PRO ALA SEQRES 11 J 355 VAL GLY VAL VAL ASP LEU GLU GLY LYS ALA PHE LYS ARG SEQRES 12 J 355 MET LEU ASP VAL PRO ASP CYS TYR HIS ILE PHE PRO THR SEQRES 13 J 355 ALA PRO ASP THR PHE PHE MET HIS CYS ARG ASP GLY SER SEQRES 14 J 355 LEU ALA LYS VAL ALA PHE GLY THR GLU GLY THR PRO GLU SEQRES 15 J 355 ILE THR HIS THR GLU VAL PHE HIS PRO GLU ASP GLU PHE SEQRES 16 J 355 LEU ILE ASN HIS PRO ALA TYR SER GLN LYS ALA GLY ARG SEQRES 17 J 355 LEU VAL TRP PRO THR TYR THR GLY LYS ILE HIS GLN ILE SEQRES 18 J 355 ASP LEU SER SER GLY ASP ALA LYS PHE LEU PRO ALA VAL SEQRES 19 J 355 GLU ALA LEU THR GLU ALA GLU ARG ALA ASP GLY TRP ARG SEQRES 20 J 355 PRO GLY GLY TRP GLN GLN VAL ALA TYR HIS ARG ALA LEU SEQRES 21 J 355 ASP ARG ILE TYR LEU LEU VAL ASP GLN ARG ASP GLU TRP SEQRES 22 J 355 ARG HIS LYS THR ALA SER ARG PHE VAL VAL VAL LEU ASP SEQRES 23 J 355 ALA LYS THR GLY GLU ARG LEU ALA LYS PHE GLU MET GLY SEQRES 24 J 355 HIS GLU ILE ASP SER ILE ASN VAL SER GLN ASP GLU LYS SEQRES 25 J 355 PRO LEU LEU TYR ALA LEU SER THR GLY ASP LYS THR LEU SEQRES 26 J 355 TYR ILE HIS ASP ALA GLU SER GLY GLU GLU LEU ARG SER SEQRES 27 J 355 VAL ASN GLN LEU GLY HIS GLY PRO GLN VAL ILE THR THR SEQRES 28 J 355 ALA ASP MET GLY SEQRES 1 M 125 THR ASP PRO ARG ALA LYS TRP VAL PRO GLN ASP ASN ASP SEQRES 2 M 125 ILE GLN ALA CYS ASP TYR TRP ARG HIS CYS SER ILE ASP SEQRES 3 M 125 GLY ASN ILE CYS ASP CYS SER GLY GLY SER LEU THR ASN SEQRES 4 M 125 CYS PRO PRO GLY THR LYS LEU ALA THR ALA SER TRQ VAL SEQRES 5 M 125 ALA SER CYS TYR ASN PRO THR ASP GLY GLN SER TYR LEU SEQRES 6 M 125 ILE ALA TYR ARG ASP CYS CYS GLY TYR ASN VAL SER GLY SEQRES 7 M 125 ARG CYS PRO CYS LEU ASN THR GLU GLY GLU LEU PRO VAL SEQRES 8 M 125 TYR ARG PRO GLU PHE ALA ASN ASP ILE ILE TRP CYS PHE SEQRES 9 M 125 GLY ALA GLU ASP ASP ALA MET THR TYR HIS CYS THR ILE SEQRES 10 M 125 SER PRO ILE VAL GLY LYS ALA SER MODRES 2BBK TRQ L 57 TRP MODRES 2BBK TRQ M 57 TRP HET TRQ L 57 16 HET TRQ M 57 16 HETNAM TRQ 2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)- HETNAM 2 TRQ PROPIONIC ACID FORMUL 2 TRQ 2(C11 H10 N2 O4) FORMUL 5 HOH *556(H2 O) HELIX 1 H1 THR H 256 GLY H 263 1LINKING H4 AND H5 SHEETS 8 HELIX 2 H2 THR J 256 GLY J 263 1LINKING H4 AND H5 SHEETS 8 SHEET 1 H1H 5 LEU H 67 ALA H 73 0 SHEET 2 H1H 5 SER H 77 SER H 87 -1 SHEET 3 H1H 5 GLY H 92 ASP H 102 -1 SHEET 4 H1H 5 LEU H 107 LEU H 114 -1 SHEET 5 H1H 5 ALA H 117 GLY H 123 -1 SHEET 1 H2H 4 MET H 128 PRO H 133 0 SHEET 2 H2H 4 LYS H 136 PHE H 143 -1 SHEET 3 H2H 4 PRO H 147 GLU H 155 -1 SHEET 4 H2H 4 LYS H 157 PRO H 166 -1 SHEET 1 H3H 4 CYS H 168 THR H 174 0 SHEET 2 H3H 4 ASP H 177 CYS H 183 -1 SHEET 3 H3H 4 GLY H 186 GLY H 194 -1 SHEET 4 H3H 4 GLY H 197 GLU H 205 -1 SHEET 1 H4H 4 ASP H 211 SER H 221 0 SHEET 2 H4H 4 ALA H 224 THR H 231 -1 SHEET 3 H4H 4 GLY H 234 SER H 242 -1 SHEET 4 H4H 4 GLY H 244 ALA H 254 -1 SHEET 1 H5H 4 GLN H 271 ARG H 276 0 SHEET 2 H5H 4 ASP H 279 LEU H 284 -1 SHEET 3 H5H 4 ALA H 296 ASP H 304 -1 SHEET 4 H5H 4 THR H 307 GLU H 319 -1 SHEET 1 H6H 4 ASP H 321 ASP H 328 0 SHEET 2 H6H 4 LYS H 330 THR H 338 -1 SHEET 3 H6H 4 LYS H 341 ALA H 348 -1 SHEET 4 H6H 4 SER H 350 ASN H 358 -1 SHEET 1 H7H 4 GLY H 363 MET H 372 0 SHEET 2 H7H 4 ALA H 31 ALA H 40 -1 SHEET 3 H7H 4 THR H 46 GLY H 53 -1 SHEET 4 H7H 4 GLY H 56 GLY H 65 -1 SHEET 1 L1L 2 SER L 30 ILE L 35 0 SHEET 2 L1L 2 CYS L 86 ASN L 90 -1 SHEET 1 L2L 2 GLY L 40 SER L 42 0 SHEET 2 L2L 2 ASN L 45 PRO L 47 -1 SHEET 1 L3L 3 THR L 50 PRO L 64 0 SHEET 2 L3L 3 GLN L 68 CYS L 78 -1 SHEET 3 L3L 3 HIS L 120 SER L 131 -1 SHEET 1 H1J 5 LEU J 67 ALA J 73 0 SHEET 2 H1J 5 SER J 77 SER J 87 -1 SHEET 3 H1J 5 GLY J 92 ASP J 102 -1 SHEET 4 H1J 5 LEU J 107 LEU J 114 -1 SHEET 5 H1J 5 ALA J 117 GLY J 123 -1 SHEET 1 H2J 4 MET J 128 PRO J 133 0 SHEET 2 H2J 4 LYS J 136 PHE J 143 -1 SHEET 3 H2J 4 PRO J 147 GLU J 155 -1 SHEET 4 H2J 4 LYS J 157 PRO J 166 -1 SHEET 1 H3J 4 CYS J 168 THR J 174 0 SHEET 2 H3J 4 ASP J 177 CYS J 183 -1 SHEET 3 H3J 4 GLY J 186 GLY J 194 -1 SHEET 4 H3J 4 GLY J 197 GLU J 205 -1 SHEET 1 H4J 4 ASP J 211 SER J 221 0 SHEET 2 H4J 4 ALA J 224 THR J 231 -1 SHEET 3 H4J 4 GLY J 234 SER J 242 -1 SHEET 4 H4J 4 GLY J 244 ALA J 254 -1 SHEET 1 H5J 4 GLN J 271 ARG J 276 0 SHEET 2 H5J 4 ASP J 279 LEU J 284 -1 SHEET 3 H5J 4 ALA J 296 ASP J 304 -1 SHEET 4 H5J 4 THR J 307 GLU J 319 -1 SHEET 1 H6J 4 ASP J 321 ASP J 328 0 SHEET 2 H6J 4 LYS J 330 THR J 338 -1 SHEET 3 H6J 4 LYS J 341 ALA J 348 -1 SHEET 4 H6J 4 SER J 350 ASN J 358 -1 SHEET 1 H7J 4 GLY J 363 MET J 372 0 SHEET 2 H7J 4 ALA J 31 ALA J 40 -1 SHEET 3 H7J 4 THR J 46 GLY J 53 -1 SHEET 4 H7J 4 GLY J 56 GLY J 65 -1 SHEET 1 L1M 2 SER M 30 ILE M 35 0 SHEET 2 L1M 2 CYS M 86 ASN M 90 -1 SHEET 1 L2M 2 GLY M 40 SER M 42 0 SHEET 2 L2M 2 ASN M 45 PRO M 47 -1 SHEET 1 L3M 3 THR M 50 PRO M 64 0 SHEET 2 L3M 3 GLN M 68 CYS M 78 -1 SHEET 3 L3M 3 HIS M 120 SER M 131 -1 SSBOND 1 CYS H 168 CYS H 183 1555 1555 2.06 SSBOND 2 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 3 CYS L 29 CYS L 61 1555 1555 2.03 SSBOND 4 CYS L 36 CYS L 121 1555 1555 2.03 SSBOND 5 CYS L 38 CYS L 86 1555 1555 2.02 SSBOND 6 CYS L 46 CYS L 77 1555 1555 2.03 SSBOND 7 CYS L 78 CYS L 109 1555 1555 2.02 SSBOND 8 CYS J 168 CYS J 183 1555 1555 2.04 SSBOND 9 CYS M 23 CYS M 88 1555 1555 2.04 SSBOND 10 CYS M 29 CYS M 61 1555 1555 2.01 SSBOND 11 CYS M 36 CYS M 121 1555 1555 2.05 SSBOND 12 CYS M 38 CYS M 86 1555 1555 2.02 SSBOND 13 CYS M 46 CYS M 77 1555 1555 2.01 SSBOND 14 CYS M 78 CYS M 109 1555 1555 2.02 LINK C SER L 56 N TRQ L 57 1555 1555 1.34 LINK C TRQ L 57 N VAL L 58 1555 1555 1.32 LINK CE3 TRQ L 57 CD1 TRP L 108 1555 1555 1.50 LINK C SER M 56 N TRQ M 57 1555 1555 1.34 LINK CE3 TRQ M 57 CD1 TRP M 108 1555 1555 1.50 LINK C TRQ M 57 N VAL M 58 1555 1555 1.33 CISPEP 1 SER H 144 PRO H 145 0 0.64 CISPEP 2 SER J 144 PRO J 145 0 1.97 SITE 1 TQL 2 TRQ L 57 TRP L 108 SITE 1 TQM 2 TRQ M 57 TRP M 108 CRYST1 152.070 135.920 55.260 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006576 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007357 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018096 0.00000 MTRIX1 1 -0.992800 -0.048300 0.109500 119.01200 1 MTRIX2 1 -0.040500 -0.725700 -0.686800 49.68700 1 MTRIX3 1 0.112700 -0.686300 0.718600 12.33100 1