HEADER TRANSFERASE 17-OCT-05 2BBW TITLE CRYSTAL STRUCTURE OF HUMAN ADENYLATE KINASE 4 (AK4) IN COMPLEX WITH TITLE 2 DIGUANOSINE PENTAPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE 4, AK4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATP-AMP TRANSPHOSPHORYLASE; COMPND 5 EC: 2.7.4.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AK4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLIC-SGC KEYWDS AK4, NUCLEOTIDE KINASE, NUCLEOTIDE BINDING, HUMAN, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,A.P.TURNBULL,O.FEDOROV,J.WEIGELT,G.BUNKOCZI, AUTHOR 2 E.UGOCHUKWU,J.DEBRECZENI,F.NIESEN,F.VON DELFT,A.EDWARDS, AUTHOR 3 C.ARROWSMITH,M.SUNDSTROM,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (SGC) REVDAT 5 23-AUG-23 2BBW 1 REMARK SEQADV REVDAT 4 13-JUL-11 2BBW 1 VERSN REVDAT 3 28-APR-10 2BBW 1 AUTHOR JRNL REVDAT 2 24-FEB-09 2BBW 1 VERSN REVDAT 1 06-DEC-05 2BBW 0 JRNL AUTH P.FILIPPAKOPOULOS,A.P.TURNBULL,O.FEDOROV,J.WEIGELT, JRNL AUTH 2 G.BUNKOCZI,E.UGOCHUKWU,J.DEBRECZENI,F.NIESEN,F.VON DELFT, JRNL AUTH 3 A.EDWARDS,C.ARROWSMITH,M.SUNDSTROM,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF HUMAN ADENYLATE KINASE 4 (AK4) IN JRNL TITL 2 COMPLEX WITH DIGUANOSINE PENTAPHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 24639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1298 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1261 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3435 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.27000 REMARK 3 B22 (A**2) : -1.18000 REMARK 3 B33 (A**2) : 2.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.236 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.882 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3662 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5015 ; 1.833 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 5.231 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;36.088 ;23.355 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 584 ;16.436 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.916 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 567 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2738 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1590 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2436 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 177 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 91 ; 0.179 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2258 ; 3.238 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3576 ; 4.786 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1625 ; 8.085 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1436 ;10.675 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6657 7.0903 34.3750 REMARK 3 T TENSOR REMARK 3 T11: -0.1607 T22: -0.1528 REMARK 3 T33: -0.1622 T12: 0.0186 REMARK 3 T13: 0.0051 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.4294 L22: 2.2067 REMARK 3 L33: 1.0081 L12: 0.8237 REMARK 3 L13: -0.1796 L23: -0.1738 REMARK 3 S TENSOR REMARK 3 S11: -0.0584 S12: 0.0098 S13: 0.0151 REMARK 3 S21: -0.0575 S22: 0.0849 S23: 0.2136 REMARK 3 S31: 0.0027 S32: -0.0429 S33: -0.0265 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7145 15.3305 50.0318 REMARK 3 T TENSOR REMARK 3 T11: -0.0063 T22: 0.0630 REMARK 3 T33: 0.0635 T12: 0.0974 REMARK 3 T13: -0.0888 T23: -0.1875 REMARK 3 L TENSOR REMARK 3 L11: 68.1781 L22: 38.1018 REMARK 3 L33: 7.8900 L12: -20.0402 REMARK 3 L13: -21.1982 L23: 0.1143 REMARK 3 S TENSOR REMARK 3 S11: 0.9166 S12: 4.0435 S13: -1.2385 REMARK 3 S21: -1.7703 S22: -1.0256 S23: 2.4436 REMARK 3 S31: -0.3258 S32: -1.9014 S33: 0.1090 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6542 9.0456 52.9790 REMARK 3 T TENSOR REMARK 3 T11: -0.0892 T22: -0.0863 REMARK 3 T33: -0.0824 T12: -0.0256 REMARK 3 T13: 0.0492 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.8979 L22: 11.9954 REMARK 3 L33: 3.8452 L12: -3.8923 REMARK 3 L13: -1.8751 L23: 5.5966 REMARK 3 S TENSOR REMARK 3 S11: -0.1979 S12: -0.2591 S13: 0.1310 REMARK 3 S21: 0.7059 S22: 0.1744 S23: 0.2058 REMARK 3 S31: 0.1538 S32: 0.0647 S33: 0.0235 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 176 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7563 12.1092 34.2897 REMARK 3 T TENSOR REMARK 3 T11: -0.1954 T22: -0.1122 REMARK 3 T33: -0.1155 T12: -0.0067 REMARK 3 T13: 0.0014 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.4544 L22: 3.9097 REMARK 3 L33: 1.2844 L12: 0.2925 REMARK 3 L13: -0.0299 L23: 0.2468 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: -0.0356 S13: -0.0959 REMARK 3 S21: -0.0519 S22: -0.0224 S23: -0.4373 REMARK 3 S31: 0.0052 S32: 0.0446 S33: -0.0130 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 30 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5324 -7.6481 2.8616 REMARK 3 T TENSOR REMARK 3 T11: -0.2130 T22: -0.1278 REMARK 3 T33: -0.1681 T12: 0.0063 REMARK 3 T13: 0.0056 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.0922 L22: 3.4262 REMARK 3 L33: 4.9750 L12: 0.8091 REMARK 3 L13: -0.4161 L23: -0.6780 REMARK 3 S TENSOR REMARK 3 S11: -0.0358 S12: -0.1008 S13: -0.2273 REMARK 3 S21: -0.0253 S22: 0.1826 S23: 0.0892 REMARK 3 S31: 0.2252 S32: -0.1813 S33: -0.1468 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5771 0.2993 8.4786 REMARK 3 T TENSOR REMARK 3 T11: -0.1428 T22: -0.1036 REMARK 3 T33: -0.1162 T12: -0.0133 REMARK 3 T13: 0.0211 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 3.3230 L22: 1.2499 REMARK 3 L33: 1.0407 L12: -0.1047 REMARK 3 L13: -0.1699 L23: -0.0443 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: -0.0766 S13: 0.0716 REMARK 3 S21: 0.1237 S22: -0.0246 S23: 0.1453 REMARK 3 S31: -0.0243 S32: 0.0009 S33: 0.0231 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 114 B 164 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2257 -5.7094 -14.6044 REMARK 3 T TENSOR REMARK 3 T11: -0.0152 T22: -0.1171 REMARK 3 T33: -0.1544 T12: 0.0046 REMARK 3 T13: -0.0206 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 4.2064 L22: 7.2805 REMARK 3 L33: 1.5168 L12: 3.9528 REMARK 3 L13: 2.3584 L23: 2.6978 REMARK 3 S TENSOR REMARK 3 S11: -0.2837 S12: 0.2512 S13: 0.1878 REMARK 3 S21: -0.5033 S22: 0.1757 S23: 0.3548 REMARK 3 S31: -0.2634 S32: 0.1280 S33: 0.1080 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 165 B 223 REMARK 3 ORIGIN FOR THE GROUP (A): 31.2053 -2.5827 1.5313 REMARK 3 T TENSOR REMARK 3 T11: -0.1418 T22: -0.1309 REMARK 3 T33: -0.0884 T12: 0.0100 REMARK 3 T13: 0.0126 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.3323 L22: 3.0073 REMARK 3 L33: 1.1298 L12: -0.4007 REMARK 3 L13: 0.4682 L23: 0.4946 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: 0.0374 S13: -0.0189 REMARK 3 S21: -0.0987 S22: 0.0602 S23: -0.2546 REMARK 3 S31: 0.0365 S32: 0.1329 S33: -0.0868 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2BBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000034917. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25968 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZD8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6000, 0.2M NACL, 10% ETHYLENE REMARK 280 GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.18750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 LEU A 224 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 LEU B 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CE NZ REMARK 470 GLN A 23 CD OE1 NE2 REMARK 470 GLN A 32 CG CD OE1 NE2 REMARK 470 ARG A 41 CD NE CZ NH1 NH2 REMARK 470 GLU A 42 OE1 OE2 REMARK 470 LYS A 45 CD CE NZ REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 LYS A 102 CE NZ REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 GLU A 165 CD OE1 OE2 REMARK 470 LYS A 175 CE NZ REMARK 470 LYS A 179 CD CE NZ REMARK 470 ILE A 182 CD1 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 213 CE NZ REMARK 470 LYS B 4 CD CE NZ REMARK 470 GLN B 32 CG CD OE1 NE2 REMARK 470 GLU B 42 CD OE1 OE2 REMARK 470 LYS B 45 CE NZ REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 LYS B 60 CE NZ REMARK 470 ARG B 81 CD NE CZ NH1 NH2 REMARK 470 LYS B 102 CE NZ REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 GLU B 160 CG CD OE1 OE2 REMARK 470 LYS B 163 NZ REMARK 470 GLU B 183 CD OE1 OE2 REMARK 470 LYS B 201 CD CE NZ REMARK 470 LYS B 213 CD CE NZ REMARK 470 LYS B 220 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 140 -51.01 -128.09 REMARK 500 PHE B 140 -61.14 -103.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GP5 A 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GP5 B 225 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AR7 RELATED DB: PDB REMARK 900 AK4 APOENZYME DBREF 2BBW A 1 223 UNP P27144 KAD4_HUMAN 1 223 DBREF 2BBW B 1 223 UNP P27144 KAD4_HUMAN 1 223 SEQADV 2BBW MET A -21 UNP P27144 CLONING ARTIFACT SEQADV 2BBW HIS A -20 UNP P27144 EXPRESSION TAG SEQADV 2BBW HIS A -19 UNP P27144 EXPRESSION TAG SEQADV 2BBW HIS A -18 UNP P27144 EXPRESSION TAG SEQADV 2BBW HIS A -17 UNP P27144 EXPRESSION TAG SEQADV 2BBW HIS A -16 UNP P27144 EXPRESSION TAG SEQADV 2BBW HIS A -15 UNP P27144 EXPRESSION TAG SEQADV 2BBW SER A -14 UNP P27144 CLONING ARTIFACT SEQADV 2BBW SER A -13 UNP P27144 CLONING ARTIFACT SEQADV 2BBW GLY A -12 UNP P27144 CLONING ARTIFACT SEQADV 2BBW VAL A -11 UNP P27144 CLONING ARTIFACT SEQADV 2BBW ASP A -10 UNP P27144 CLONING ARTIFACT SEQADV 2BBW LEU A -9 UNP P27144 CLONING ARTIFACT SEQADV 2BBW GLY A -8 UNP P27144 CLONING ARTIFACT SEQADV 2BBW THR A -7 UNP P27144 CLONING ARTIFACT SEQADV 2BBW GLU A -6 UNP P27144 CLONING ARTIFACT SEQADV 2BBW ASN A -5 UNP P27144 CLONING ARTIFACT SEQADV 2BBW LEU A -4 UNP P27144 CLONING ARTIFACT SEQADV 2BBW TYR A -3 UNP P27144 CLONING ARTIFACT SEQADV 2BBW PHE A -2 UNP P27144 CLONING ARTIFACT SEQADV 2BBW GLN A -1 UNP P27144 CLONING ARTIFACT SEQADV 2BBW SER A 0 UNP P27144 CLONING ARTIFACT SEQADV 2BBW LEU A 224 UNP P27144 CLONING ARTIFACT SEQADV 2BBW MET B -21 UNP P27144 CLONING ARTIFACT SEQADV 2BBW HIS B -20 UNP P27144 EXPRESSION TAG SEQADV 2BBW HIS B -19 UNP P27144 EXPRESSION TAG SEQADV 2BBW HIS B -18 UNP P27144 EXPRESSION TAG SEQADV 2BBW HIS B -17 UNP P27144 EXPRESSION TAG SEQADV 2BBW HIS B -16 UNP P27144 EXPRESSION TAG SEQADV 2BBW HIS B -15 UNP P27144 EXPRESSION TAG SEQADV 2BBW SER B -14 UNP P27144 CLONING ARTIFACT SEQADV 2BBW SER B -13 UNP P27144 CLONING ARTIFACT SEQADV 2BBW GLY B -12 UNP P27144 CLONING ARTIFACT SEQADV 2BBW VAL B -11 UNP P27144 CLONING ARTIFACT SEQADV 2BBW ASP B -10 UNP P27144 CLONING ARTIFACT SEQADV 2BBW LEU B -9 UNP P27144 CLONING ARTIFACT SEQADV 2BBW GLY B -8 UNP P27144 CLONING ARTIFACT SEQADV 2BBW THR B -7 UNP P27144 CLONING ARTIFACT SEQADV 2BBW GLU B -6 UNP P27144 CLONING ARTIFACT SEQADV 2BBW ASN B -5 UNP P27144 CLONING ARTIFACT SEQADV 2BBW LEU B -4 UNP P27144 CLONING ARTIFACT SEQADV 2BBW TYR B -3 UNP P27144 CLONING ARTIFACT SEQADV 2BBW PHE B -2 UNP P27144 CLONING ARTIFACT SEQADV 2BBW GLN B -1 UNP P27144 CLONING ARTIFACT SEQADV 2BBW SER B 0 UNP P27144 CLONING ARTIFACT SEQADV 2BBW LEU B 224 UNP P27144 CLONING ARTIFACT SEQRES 1 A 246 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 246 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA SER LYS SEQRES 3 A 246 LEU LEU ARG ALA VAL ILE LEU GLY PRO PRO GLY SER GLY SEQRES 4 A 246 LYS GLY THR VAL CYS GLN ARG ILE ALA GLN ASN PHE GLY SEQRES 5 A 246 LEU GLN HIS LEU SER SER GLY HIS PHE LEU ARG GLU ASN SEQRES 6 A 246 ILE LYS ALA SER THR GLU VAL GLY GLU MET ALA LYS GLN SEQRES 7 A 246 TYR ILE GLU LYS SER LEU LEU VAL PRO ASP HIS VAL ILE SEQRES 8 A 246 THR ARG LEU MET MET SER GLU LEU GLU ASN ARG ARG GLY SEQRES 9 A 246 GLN HIS TRP LEU LEU ASP GLY PHE PRO ARG THR LEU GLY SEQRES 10 A 246 GLN ALA GLU ALA LEU ASP LYS ILE CYS GLU VAL ASP LEU SEQRES 11 A 246 VAL ILE SER LEU ASN ILE PRO PHE GLU THR LEU LYS ASP SEQRES 12 A 246 ARG LEU SER ARG ARG TRP ILE HIS PRO PRO SER GLY ARG SEQRES 13 A 246 VAL TYR ASN LEU ASP PHE ASN PRO PRO HIS VAL HIS GLY SEQRES 14 A 246 ILE ASP ASP VAL THR GLY GLU PRO LEU VAL GLN GLN GLU SEQRES 15 A 246 ASP ASP LYS PRO GLU ALA VAL ALA ALA ARG LEU ARG GLN SEQRES 16 A 246 TYR LYS ASP VAL ALA LYS PRO VAL ILE GLU LEU TYR LYS SEQRES 17 A 246 SER ARG GLY VAL LEU HIS GLN PHE SER GLY THR GLU THR SEQRES 18 A 246 ASN LYS ILE TRP PRO TYR VAL TYR THR LEU PHE SER ASN SEQRES 19 A 246 LYS ILE THR PRO ILE GLN SER LYS GLU ALA TYR LEU SEQRES 1 B 246 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 246 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA SER LYS SEQRES 3 B 246 LEU LEU ARG ALA VAL ILE LEU GLY PRO PRO GLY SER GLY SEQRES 4 B 246 LYS GLY THR VAL CYS GLN ARG ILE ALA GLN ASN PHE GLY SEQRES 5 B 246 LEU GLN HIS LEU SER SER GLY HIS PHE LEU ARG GLU ASN SEQRES 6 B 246 ILE LYS ALA SER THR GLU VAL GLY GLU MET ALA LYS GLN SEQRES 7 B 246 TYR ILE GLU LYS SER LEU LEU VAL PRO ASP HIS VAL ILE SEQRES 8 B 246 THR ARG LEU MET MET SER GLU LEU GLU ASN ARG ARG GLY SEQRES 9 B 246 GLN HIS TRP LEU LEU ASP GLY PHE PRO ARG THR LEU GLY SEQRES 10 B 246 GLN ALA GLU ALA LEU ASP LYS ILE CYS GLU VAL ASP LEU SEQRES 11 B 246 VAL ILE SER LEU ASN ILE PRO PHE GLU THR LEU LYS ASP SEQRES 12 B 246 ARG LEU SER ARG ARG TRP ILE HIS PRO PRO SER GLY ARG SEQRES 13 B 246 VAL TYR ASN LEU ASP PHE ASN PRO PRO HIS VAL HIS GLY SEQRES 14 B 246 ILE ASP ASP VAL THR GLY GLU PRO LEU VAL GLN GLN GLU SEQRES 15 B 246 ASP ASP LYS PRO GLU ALA VAL ALA ALA ARG LEU ARG GLN SEQRES 16 B 246 TYR LYS ASP VAL ALA LYS PRO VAL ILE GLU LEU TYR LYS SEQRES 17 B 246 SER ARG GLY VAL LEU HIS GLN PHE SER GLY THR GLU THR SEQRES 18 B 246 ASN LYS ILE TRP PRO TYR VAL TYR THR LEU PHE SER ASN SEQRES 19 B 246 LYS ILE THR PRO ILE GLN SER LYS GLU ALA TYR LEU HET GP5 A 225 59 HET GP5 B 225 59 HETNAM GP5 DIGUANOSINE-PENTAPHOSPHATE FORMUL 3 GP5 2(C20 H29 N10 O24 P5) FORMUL 5 HOH *154(H2 O) HELIX 1 1 GLY A 17 GLY A 30 1 14 HELIX 2 2 SER A 36 ALA A 46 1 11 HELIX 3 3 THR A 48 LYS A 60 1 13 HELIX 4 4 PRO A 65 ASN A 79 1 15 HELIX 5 5 THR A 93 LYS A 102 1 10 HELIX 6 6 PRO A 115 ARG A 125 1 11 HELIX 7 7 GLN A 159 ASP A 162 5 4 HELIX 8 8 LYS A 163 ARG A 188 1 26 HELIX 9 9 GLU A 198 ASN A 212 1 15 HELIX 10 10 SER A 219 TYR A 223 5 5 HELIX 11 11 GLY B 17 GLY B 30 1 14 HELIX 12 12 SER B 35 SER B 47 1 13 HELIX 13 13 THR B 48 LYS B 60 1 13 HELIX 14 14 PRO B 65 ASN B 79 1 15 HELIX 15 15 THR B 93 LYS B 102 1 10 HELIX 16 16 PRO B 115 ARG B 125 1 11 HELIX 17 17 GLN B 159 ASP B 162 5 4 HELIX 18 18 LYS B 163 ARG B 188 1 26 HELIX 19 19 GLU B 198 ASN B 212 1 15 SHEET 1 A 5 LEU A 34 SER A 35 0 SHEET 2 A 5 TRP A 85 ASP A 88 1 O ASP A 88 N LEU A 34 SHEET 3 A 5 ARG A 7 LEU A 11 1 N ILE A 10 O LEU A 87 SHEET 4 A 5 LEU A 108 ASN A 113 1 O ILE A 110 N LEU A 11 SHEET 5 A 5 LEU A 191 SER A 195 1 O PHE A 194 N ASN A 113 SHEET 1 B 2 ARG A 126 HIS A 129 0 SHEET 2 B 2 ARG A 134 ASN A 137 -1 O TYR A 136 N TRP A 127 SHEET 1 C 4 TRP B 85 ASP B 88 0 SHEET 2 C 4 ARG B 7 LEU B 11 1 N ILE B 10 O LEU B 87 SHEET 3 C 4 LEU B 108 ASN B 113 1 O ILE B 110 N LEU B 11 SHEET 4 C 4 LEU B 191 SER B 195 1 O HIS B 192 N VAL B 109 SHEET 1 D 2 TRP B 127 ILE B 128 0 SHEET 2 D 2 VAL B 135 TYR B 136 -1 O TYR B 136 N TRP B 127 CISPEP 1 PHE A 90 PRO A 91 0 6.13 CISPEP 2 PHE B 90 PRO B 91 0 3.43 SITE 1 AC1 29 PRO A 14 GLY A 15 SER A 16 GLY A 17 SITE 2 AC1 29 LYS A 18 GLY A 19 THR A 20 SER A 36 SITE 3 AC1 29 LEU A 40 VAL A 64 ASP A 66 ILE A 69 SITE 4 AC1 29 GLY A 89 ARG A 92 ARG A 122 ARG A 126 SITE 5 AC1 29 ASN A 137 PHE A 140 ARG A 170 GLU A 198 SITE 6 AC1 29 THR A 199 HOH A 238 HOH A 241 HOH A 258 SITE 7 AC1 29 HOH A 261 HOH A 266 HOH A 273 HOH A 279 SITE 8 AC1 29 HOH A 290 SITE 1 AC2 28 GLY B 15 SER B 16 GLY B 17 LYS B 18 SITE 2 AC2 28 GLY B 19 THR B 20 SER B 36 LEU B 63 SITE 3 AC2 28 VAL B 64 ASP B 66 ILE B 69 GLY B 89 SITE 4 AC2 28 ARG B 92 ARG B 122 ARG B 126 VAL B 135 SITE 5 AC2 28 TYR B 136 ASN B 137 ASP B 139 PHE B 140 SITE 6 AC2 28 ARG B 170 GLU B 198 THR B 199 HOH B 232 SITE 7 AC2 28 HOH B 243 HOH B 248 HOH B 250 HOH B 265 CRYST1 42.836 66.375 77.380 90.00 91.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023345 0.000000 0.000610 0.00000 SCALE2 0.000000 0.015066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012928 0.00000