HEADER TRANSCRIPTION REGULATION 27-APR-98 2BBY TITLE DNA-BINDING DOMAIN FROM HUMAN RAP30, NMR, 30 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAP30; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HMS174 (DE3); SOURCE 8 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS TRANSCRIPTION REGULATION, RAP30, DNA-BINDING DOMAIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR C.M.GROFT,S.N.ULJON,R.WANG,M.H.WERNER REVDAT 5 22-MAY-24 2BBY 1 REMARK REVDAT 4 09-MAR-22 2BBY 1 REMARK REVDAT 3 24-FEB-09 2BBY 1 VERSN REVDAT 2 13-JAN-99 2BBY 1 REMARK TITLE HEADER SOURCE REVDAT 2 2 1 KEYWDS SHEET REVDAT 1 25-NOV-98 2BBY 0 JRNL AUTH C.M.GROFT,S.N.ULJON,R.WANG,M.H.WERNER JRNL TITL STRUCTURAL HOMOLOGY BETWEEN THE RAP30 DNA-BINDING DOMAIN AND JRNL TITL 2 LINKER HISTONE H5: IMPLICATIONS FOR PREINITIATION COMPLEX JRNL TITL 3 ASSEMBLY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 95 9117 1998 JRNL REFN ISSN 0027-8424 JRNL PMID 9689043 JRNL DOI 10.1073/PNAS.95.16.9117 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN JRNL REMARK 3 CITATION REMARK 4 REMARK 4 2BBY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177817. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 10MM PHOSPHATE, 50MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : AQUEOUS REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D/4D HETERONUCLEAR NOESY/ROESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX500; DMX600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.851 REMARK 210 METHOD USED : DYNAMICAL SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT AND ANGULAR REMARK 210 VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: STRUCTURE DETERMINED USING STANDARD MULTI-NUCLEAR 3D/4D REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 220 H LYS A 236 1.47 REMARK 500 O ASP A 179 H VAL A 183 1.49 REMARK 500 O VAL A 210 H LYS A 214 1.56 REMARK 500 O LEU A 187 H PHE A 191 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 207 29.43 -74.63 REMARK 500 1 LYS A 226 -160.56 -126.72 REMARK 500 1 ILE A 228 39.79 -86.22 REMARK 500 2 LYS A 207 30.39 -74.71 REMARK 500 2 LYS A 226 -166.12 -126.40 REMARK 500 3 LYS A 207 25.91 -79.10 REMARK 500 3 ILE A 228 4.95 -68.76 REMARK 500 3 HIS A 229 46.48 81.38 REMARK 500 4 LYS A 207 21.99 -77.01 REMARK 500 4 LYS A 226 -167.51 -125.65 REMARK 500 4 HIS A 229 58.23 74.63 REMARK 500 5 HIS A 229 53.00 81.36 REMARK 500 6 LYS A 207 22.37 -78.82 REMARK 500 6 LYS A 226 -167.31 -127.36 REMARK 500 7 LYS A 207 23.92 -78.61 REMARK 500 7 LYS A 226 -165.93 -126.75 REMARK 500 7 ILE A 228 31.40 -85.04 REMARK 500 8 LYS A 226 -164.26 -125.99 REMARK 500 8 ILE A 228 23.10 -79.80 REMARK 500 8 LEU A 235 91.05 -68.69 REMARK 500 9 LYS A 207 30.17 -79.93 REMARK 500 9 LYS A 226 -160.61 -126.68 REMARK 500 9 ILE A 228 41.16 -69.57 REMARK 500 10 ALA A 176 14.99 -64.13 REMARK 500 10 HIS A 229 51.91 82.41 REMARK 500 10 LEU A 235 99.03 -66.85 REMARK 500 10 LYS A 236 109.66 -53.76 REMARK 500 11 ALA A 176 -2.58 -55.76 REMARK 500 11 LYS A 226 -167.28 -125.09 REMARK 500 12 LYS A 207 25.93 -79.15 REMARK 500 12 ILE A 228 30.01 -82.28 REMARK 500 13 LYS A 226 -168.67 -126.72 REMARK 500 14 LYS A 207 33.40 -78.97 REMARK 500 14 HIS A 229 52.66 83.97 REMARK 500 15 LYS A 207 29.52 -78.05 REMARK 500 15 LYS A 226 -164.80 -127.09 REMARK 500 15 ILE A 228 40.14 -88.31 REMARK 500 16 ALA A 176 8.66 -68.39 REMARK 500 16 LYS A 207 30.03 -82.24 REMARK 500 16 LYS A 226 -165.16 -126.94 REMARK 500 17 LYS A 207 25.41 -78.15 REMARK 500 17 HIS A 229 51.57 74.81 REMARK 500 18 ALA A 176 6.38 -63.39 REMARK 500 18 LYS A 207 31.01 -78.57 REMARK 500 18 ILE A 228 11.09 -69.70 REMARK 500 19 ALA A 176 0.04 -59.04 REMARK 500 19 LYS A 207 22.25 -71.15 REMARK 500 19 LYS A 226 -166.88 -126.01 REMARK 500 20 ALA A 176 8.46 -69.09 REMARK 500 20 LYS A 226 -161.86 -126.60 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BBY RELATED DB: PDB DBREF 2BBY A 175 243 UNP P13984 T2FB_HUMAN 175 243 SEQRES 1 A 69 ARG ALA ARG ALA ASP LYS GLN HIS VAL LEU ASP MET LEU SEQRES 2 A 69 PHE SER ALA PHE GLU LYS HIS GLN TYR TYR ASN LEU LYS SEQRES 3 A 69 ASP LEU VAL ASP ILE THR LYS GLN PRO VAL VAL TYR LEU SEQRES 4 A 69 LYS GLU ILE LEU LYS GLU ILE GLY VAL GLN ASN VAL LYS SEQRES 5 A 69 GLY ILE HIS LYS ASN THR TRP GLU LEU LYS PRO GLU TYR SEQRES 6 A 69 ARG HIS TYR GLN HELIX 1 1 ASP A 179 LYS A 193 1 15 HELIX 2 2 LEU A 199 ILE A 205 1 7 HELIX 3 3 VAL A 210 GLU A 219 1 10 SHEET 1 S1 3 TYR A 196 TYR A 197 0 SHEET 2 S1 3 ASN A 231 GLU A 234 -1 SHEET 3 S1 3 ILE A 220 VAL A 225 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1