HEADER SIGNALING PROTEIN 19-OCT-05 2BC9 TITLE CRYSTAL-STRUCTURE OF THE N-TERMINAL LARGE GTPASE DOMAIN OF HUMAN TITLE 2 GUANYLATE BINDING PROTEIN 1 (HGBP1) IN COMPLEX WITH NON-HYDROLYSABLE TITLE 3 GTP ANALOGUE GPPNHP COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON-INDUCED GUANYLATE-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL LARGE GTPASE DOAMIN; COMPND 5 SYNONYM: GTP-BINDING PROTEIN 1, GUANINE NUCLEOTIDE-BINDING PROTEIN 1, COMPND 6 HUGBP-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE9 KEYWDS PROTEIN- GUANINE NUCLEOTIDE COMPLEX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.GHOSH,G.J.K.PRAEFCKE,L.RENAULT,A.WITTINGHOFER,C.HERRMANN REVDAT 4 23-AUG-23 2BC9 1 REMARK SEQADV LINK ATOM REVDAT 3 24-JAN-18 2BC9 1 AUTHOR REVDAT 2 24-FEB-09 2BC9 1 VERSN REVDAT 1 07-MAR-06 2BC9 0 JRNL AUTH A.GHOSH,G.J.PRAEFCKE,L.RENAULT,A.WITTINGHOFER,C.HERRMANN JRNL TITL HOW GUANYLATE-BINDING PROTEINS ACHIEVE ASSEMBLY-STIMULATED JRNL TITL 2 PROCESSIVE CLEAVAGE OF GTP TO GMP. JRNL REF NATURE V. 440 101 2006 JRNL REFN ISSN 0028-0836 JRNL PMID 16511497 JRNL DOI 10.1038/NATURE04510 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.PRAKASH,L.RENAULT,G.J.PRAEFCKE,C.HERRMANN,A.WITTINGHOFER REMARK 1 TITL TRIPHOSPHATE STRUCTURE OF GUANYLATE-BINDING PROTEIN 1 AND REMARK 1 TITL 2 IMPLICATIONS FOR NUCLEOTIDE BINDING AND GTPASE MECHANISM. REMARK 1 REF EMBO J. V. 19 4555 2000 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 10970849 REMARK 1 DOI 10.1093/EMBOJ/19.17.4555 REMARK 1 REFERENCE 2 REMARK 1 AUTH B.PRAKASH,G.J.PRAEFCKE,L.RENAULT,C.HERRMANN,A.WITTINGHOFER REMARK 1 TITL STRUCTURE OF HUMAN GUANYLATE-BINDING PROTEIN 1 REPRESENTING REMARK 1 TITL 2 A UNIQUE CLASS OF GTP-BINDING PROTEINS. REMARK 1 REF NATURE V. 403 567 2000 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 10676968 REMARK 1 DOI 10.1038/35000617 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 10010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 534 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.90 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 41 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2331 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.429 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BC9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND MONOCHROMATOR REMARK 200 OPTICS : GE (220) CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY: 2B8W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % PEG 3350, 100 MM NASCN, 40 MM REMARK 280 CACL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.44200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.63050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.55200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.63050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.44200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.55200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.44200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.55200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.63050 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.55200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.44200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.63050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ONE OF THE SUBUNIT OF HOMODIMERIC BIOLOGICAL ASSEMBLY IS IN REMARK 300 THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.63050 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 MET A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 157 REMARK 465 PRO A 158 REMARK 465 ASP A 159 REMARK 465 GLU A 160 REMARK 465 ASN A 161 REMARK 465 GLU A 162 REMARK 465 ASN A 163 REMARK 465 GLU A 164 REMARK 465 VAL A 165 REMARK 465 GLU A 166 REMARK 465 ASP A 167 REMARK 465 SER A 168 REMARK 465 ALA A 169 REMARK 465 LEU A 309 REMARK 465 PRO A 310 REMARK 465 CYS A 311 REMARK 465 MET A 312 REMARK 465 GLU A 313 REMARK 465 ASN A 314 REMARK 465 ALA A 315 REMARK 465 VAL A 316 REMARK 465 LEU A 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 600 O HOH A 600 6555 0.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 195 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 172.14 -41.48 REMARK 500 ILE A 5 63.49 22.12 REMARK 500 HIS A 6 60.69 -101.29 REMARK 500 MET A 7 87.89 -153.04 REMARK 500 THR A 17 -76.80 -100.00 REMARK 500 LEU A 46 155.11 -47.29 REMARK 500 THR A 70 -169.02 -114.12 REMARK 500 LYS A 155 38.27 -71.34 REMARK 500 VAL A 172 91.76 59.29 REMARK 500 SER A 173 -170.74 -44.01 REMARK 500 PHE A 174 21.60 -147.27 REMARK 500 SER A 186 9.54 -150.61 REMARK 500 LEU A 189 72.50 76.00 REMARK 500 PRO A 195 145.68 -31.67 REMARK 500 LYS A 210 -17.11 -49.62 REMARK 500 SER A 213 158.79 165.44 REMARK 500 ASP A 216 -2.67 -58.58 REMARK 500 PHE A 219 -70.09 -68.72 REMARK 500 PRO A 241 -105.94 -31.77 REMARK 500 VAL A 242 -143.29 -86.07 REMARK 500 ARG A 244 140.90 -35.74 REMARK 500 ARG A 245 -29.62 88.93 REMARK 500 SER A 305 -174.20 59.49 REMARK 500 SER A 306 -144.00 45.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 595 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 52 OG REMARK 620 2 THR A 75 OG1 102.3 REMARK 620 3 GNP A 593 O2G 161.0 96.5 REMARK 620 4 GNP A 593 O2B 76.5 173.2 84.5 REMARK 620 5 HOH A 631 O 86.3 92.7 90.4 80.5 REMARK 620 6 HOH A 632 O 94.1 94.9 86.7 92.0 172.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 595 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 593 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B8W RELATED DB: PDB REMARK 900 SAME PROTEIN (N-TERMINAL LARGE GTPASE DOMAIN) IN COMPLEX WITH GMP/ REMARK 900 ALF4 REMARK 900 RELATED ID: 2B92 RELATED DB: PDB REMARK 900 SAME PROTEIN (N-TERMINAL LARGE GTPASE DOMAIN) IN COMPLEX WITH GMP/ REMARK 900 ALF4 REMARK 900 RELATED ID: 2D4H RELATED DB: PDB REMARK 900 SAME PROTEIN (N-TERMINAL LARGE GTPASE DOMAIN) IN COMPLEX WITH GMP REMARK 900 RELATED ID: 1DG3 RELATED DB: PDB REMARK 900 THE FULL LENGTH PROTEIN WITH H507Q MUTATION AND IN NUCLEOTIDE FREE REMARK 900 STATE REMARK 900 RELATED ID: 1F5N RELATED DB: PDB REMARK 900 THE FULL LENGTH PROTEIN WITH H507Q MUTATION AND IN COMPLEX WITH NON- REMARK 900 HYDROLYSABLE GTP ANALOGUE GPPNHP DBREF 2BC9 A 1 317 UNP P32455 GBP1_HUMAN 1 317 SEQADV 2BC9 MET A -10 UNP P32455 CLONING ARTIFACT SEQADV 2BC9 HIS A -9 UNP P32455 EXPRESSION TAG SEQADV 2BC9 HIS A -8 UNP P32455 EXPRESSION TAG SEQADV 2BC9 HIS A -7 UNP P32455 EXPRESSION TAG SEQADV 2BC9 HIS A -6 UNP P32455 EXPRESSION TAG SEQADV 2BC9 HIS A -5 UNP P32455 EXPRESSION TAG SEQADV 2BC9 HIS A -4 UNP P32455 EXPRESSION TAG SEQADV 2BC9 MET A -3 UNP P32455 CLONING ARTIFACT SEQADV 2BC9 ARG A -2 UNP P32455 CLONING ARTIFACT SEQADV 2BC9 GLY A -1 UNP P32455 CLONING ARTIFACT SEQADV 2BC9 SER A 0 UNP P32455 CLONING ARTIFACT SEQRES 1 A 328 MET HIS HIS HIS HIS HIS HIS MET ARG GLY SER MET ALA SEQRES 2 A 328 SER GLU ILE HIS MET THR GLY PRO MET CYS LEU ILE GLU SEQRES 3 A 328 ASN THR ASN GLY ARG LEU MET ALA ASN PRO GLU ALA LEU SEQRES 4 A 328 LYS ILE LEU SER ALA ILE THR GLN PRO MET VAL VAL VAL SEQRES 5 A 328 ALA ILE VAL GLY LEU TYR ARG THR GLY LYS SER TYR LEU SEQRES 6 A 328 MET ASN LYS LEU ALA GLY LYS LYS LYS GLY PHE SER LEU SEQRES 7 A 328 GLY SER THR VAL GLN SER HIS THR LYS GLY ILE TRP MET SEQRES 8 A 328 TRP CYS VAL PRO HIS PRO LYS LYS PRO GLY HIS ILE LEU SEQRES 9 A 328 VAL LEU LEU ASP THR GLU GLY LEU GLY ASP VAL GLU LYS SEQRES 10 A 328 GLY ASP ASN GLN ASN ASP SER TRP ILE PHE ALA LEU ALA SEQRES 11 A 328 VAL LEU LEU SER SER THR PHE VAL TYR ASN SER ILE GLY SEQRES 12 A 328 THR ILE ASN GLN GLN ALA MET ASP GLN LEU TYR TYR VAL SEQRES 13 A 328 THR GLU LEU THR HIS ARG ILE ARG SER LYS SER SER PRO SEQRES 14 A 328 ASP GLU ASN GLU ASN GLU VAL GLU ASP SER ALA ASP PHE SEQRES 15 A 328 VAL SER PHE PHE PRO ASP PHE VAL TRP THR LEU ARG ASP SEQRES 16 A 328 PHE SER LEU ASP LEU GLU ALA ASP GLY GLN PRO LEU THR SEQRES 17 A 328 PRO ASP GLU TYR LEU THR TYR SER LEU LYS LEU LYS LYS SEQRES 18 A 328 GLY THR SER GLN LYS ASP GLU THR PHE ASN LEU PRO ARG SEQRES 19 A 328 LEU CYS ILE ARG LYS PHE PHE PRO LYS LYS LYS CYS PHE SEQRES 20 A 328 VAL PHE ASP ARG PRO VAL HIS ARG ARG LYS LEU ALA GLN SEQRES 21 A 328 LEU GLU LYS LEU GLN ASP GLU GLU LEU ASP PRO GLU PHE SEQRES 22 A 328 VAL GLN GLN VAL ALA ASP PHE CYS SER TYR ILE PHE SER SEQRES 23 A 328 ASN SER LYS THR LYS THR LEU SER GLY GLY ILE GLN VAL SEQRES 24 A 328 ASN GLY PRO ARG LEU GLU SER LEU VAL LEU THR TYR VAL SEQRES 25 A 328 ASN ALA ILE SER SER GLY ASP LEU PRO CYS MET GLU ASN SEQRES 26 A 328 ALA VAL LEU HET MG A 595 1 HET GNP A 593 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 2 MG MG 2+ FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 HOH *38(H2 O) HELIX 1 1 ASN A 24 SER A 32 1 9 HELIX 2 2 GLY A 50 LEU A 58 1 9 HELIX 3 3 ASP A 108 SER A 123 1 16 HELIX 4 4 ASN A 135 LYS A 155 1 21 HELIX 5 5 THR A 197 LYS A 207 1 11 HELIX 6 6 SER A 213 PHE A 219 1 7 HELIX 7 7 PHE A 219 PHE A 230 1 12 HELIX 8 8 LYS A 246 LEU A 250 5 5 HELIX 9 9 ASP A 259 SER A 277 1 19 HELIX 10 10 ASN A 289 ILE A 304 1 16 SHEET 1 A 8 LEU A 21 ALA A 23 0 SHEET 2 A 8 MET A 11 ASN A 16 -1 N GLU A 15 O MET A 22 SHEET 3 A 8 ILE A 78 PRO A 84 -1 O ILE A 78 N LEU A 13 SHEET 4 A 8 ILE A 92 THR A 98 -1 O ASP A 97 N TRP A 79 SHEET 5 A 8 MET A 38 VAL A 44 1 N VAL A 41 O VAL A 94 SHEET 6 A 8 THR A 125 ILE A 131 1 O VAL A 127 N ALA A 42 SHEET 7 A 8 ASP A 177 ARG A 183 1 O ASP A 177 N PHE A 126 SHEET 8 A 8 LYS A 233 VAL A 237 1 O PHE A 236 N LEU A 182 SHEET 1 B 2 GLU A 190 ALA A 191 0 SHEET 2 B 2 GLN A 194 PRO A 195 -1 O GLN A 194 N ALA A 191 LINK OG SER A 52 MG MG A 595 1555 1555 2.05 LINK OG1 THR A 75 MG MG A 595 1555 1555 2.27 LINK O2G GNP A 593 MG MG A 595 1555 1555 2.12 LINK O2B GNP A 593 MG MG A 595 1555 1555 2.20 LINK MG MG A 595 O HOH A 631 1555 1555 2.41 LINK MG MG A 595 O HOH A 632 1555 1555 2.32 SITE 1 AC1 5 SER A 52 THR A 75 GNP A 593 HOH A 631 SITE 2 AC1 5 HOH A 632 SITE 1 AC2 26 TYR A 47 ARG A 48 THR A 49 GLY A 50 SITE 2 AC2 26 LYS A 51 SER A 52 TYR A 53 LEU A 67 SITE 3 AC2 26 GLY A 68 SER A 69 HIS A 74 THR A 75 SITE 4 AC2 26 GLY A 100 ARG A 183 ASP A 184 SER A 186 SITE 5 AC2 26 PRO A 241 LEU A 247 ALA A 248 LEU A 250 SITE 6 AC2 26 MG A 595 HOH A 605 HOH A 609 HOH A 612 SITE 7 AC2 26 HOH A 631 HOH A 632 CRYST1 54.884 101.104 149.261 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018220 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006700 0.00000