data_2BCW # _entry.id 2BCW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2BCW pdb_00002bcw 10.2210/pdb2bcw/pdb RCSB RCSB034945 ? ? WWPDB D_1000034945 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-12-20 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-07-18 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' em_image_scans 2 4 'Structure model' em_software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' em_3d_fitting_list 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_em_software.image_processing_id' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_em_3d_fitting_list.accession_code' 5 5 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 6 5 'Structure model' '_em_3d_fitting_list.source_name' 7 5 'Structure model' '_em_3d_fitting_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BCW _pdbx_database_status.recvd_initial_deposition_date 2005-10-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1MMS 'N-terminal domain of ribosomal protein L11 from Thermotoga maritima' unspecified PDB 1CTF 'C-terminal domain of ribosomal protein L7/L12 from Escherichia coli' unspecified PDB 1ELO ;A portion of G' domain of EF-G from Thermus thermophilus ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Datta, P.P.' 1 'Sharma, M.R.' 2 'Qi, L.' 3 'Frank, J.' 4 'Agrawal, R.K.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Interaction of the G' Domain of Elongation Factor G and the C-Terminal Domain of Ribosomal Protein L7/L12 during Translocation as Revealed by Cryo-EM. ; Mol.Cell 20 723 731 2005 MOCEFL US 1097-2765 2168 ? 16337596 10.1016/j.molcel.2005.10.028 1 'A detailed view of a ribosomal active site: the structure of the L11-RNA complex' 'Cell(Cambridge,Mass.)' 97 491 502 1999 CELLB5 US 0092-8674 0998 ? 10338213 '10.1016/S0092-8674(00)80759-X' 2 'Structure of the C-terminal domain of the ribosomal protein L7/L12 from Escherichia coli at 1.7' J.Mol.Biol. 195 555 579 1987 JMOBAK UK 0022-2836 0070 ? 3309338 '10.1016/0022-2836(87)90183-5' 3 'Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus' 'Embo J.' 13 3669 3677 1994 EMJODG UK 0261-4189 0897 ? 8070397 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Datta, P.P.' 1 ? primary 'Sharma, M.R.' 2 ? primary 'Qi, L.' 3 ? primary 'Frank, J.' 4 ? primary 'Agrawal, R.K.' 5 ? 1 'Wimberly, B.T.' 6 ? 1 'Guymon, R.' 7 ? 1 'McCutcheon, J.P.' 8 ? 1 'White, S.W.' 9 ? 1 'Ramakrishnan, V.' 10 ? 2 'Leijonmarck, M.' 11 ? 2 'Liljas, A.' 12 ? 3 'Aevarsson, A.' 13 ? 3 'Brazhnikov, E.' 14 ? 3 'Garber, M.' 15 ? 3 'Zheltonosova, J.' 16 ? 3 'Chirgadze, Y.' 17 ? 3 'al-Karadaghi, S.' 18 ? 3 'Svensson, L.A.' 19 ? 3 'Liljas, A.' 20 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat '50S ribosomal protein L11' 7021.266 1 ? ? 'N-terminal domain' ? 2 polymer nat '50S ribosomal protein L7/L12' 6942.973 1 ? ? 'C-terminal domain' ? 3 polymer nat 'Elongation factor G' 6710.497 1 ? ? ;A portion of G' domain' ; ? # loop_ _entity_name_com.entity_id _entity_name_com.name 2 L8 3 EF-G # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKT QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKT A ? 2 'polypeptide(L)' no no EFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEVK EFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEVK B ? 3 'polypeptide(L)' no no PIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITP PIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITP C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ILE n 1 3 LYS n 1 4 LEU n 1 5 GLN n 1 6 LEU n 1 7 PRO n 1 8 ALA n 1 9 GLY n 1 10 LYS n 1 11 ALA n 1 12 THR n 1 13 PRO n 1 14 ALA n 1 15 PRO n 1 16 PRO n 1 17 VAL n 1 18 GLY n 1 19 PRO n 1 20 ALA n 1 21 LEU n 1 22 GLY n 1 23 GLN n 1 24 HIS n 1 25 GLY n 1 26 VAL n 1 27 ASN n 1 28 ILE n 1 29 MET n 1 30 GLU n 1 31 PHE n 1 32 CYS n 1 33 LYS n 1 34 ARG n 1 35 PHE n 1 36 ASN n 1 37 ALA n 1 38 GLU n 1 39 THR n 1 40 ALA n 1 41 ASP n 1 42 LYS n 1 43 ALA n 1 44 GLY n 1 45 MET n 1 46 ILE n 1 47 LEU n 1 48 PRO n 1 49 VAL n 1 50 VAL n 1 51 ILE n 1 52 THR n 1 53 VAL n 1 54 TYR n 1 55 GLU n 1 56 ASP n 1 57 LYS n 1 58 SER n 1 59 PHE n 1 60 THR n 1 61 PHE n 1 62 ILE n 1 63 ILE n 1 64 LYS n 1 65 THR n 2 1 GLU n 2 2 PHE n 2 3 ASP n 2 4 VAL n 2 5 ILE n 2 6 LEU n 2 7 LYS n 2 8 ALA n 2 9 ALA n 2 10 GLY n 2 11 ALA n 2 12 ASN n 2 13 LYS n 2 14 VAL n 2 15 ALA n 2 16 VAL n 2 17 ILE n 2 18 LYS n 2 19 ALA n 2 20 VAL n 2 21 ARG n 2 22 GLY n 2 23 ALA n 2 24 THR n 2 25 GLY n 2 26 LEU n 2 27 GLY n 2 28 LEU n 2 29 LYS n 2 30 GLU n 2 31 ALA n 2 32 LYS n 2 33 ASP n 2 34 LEU n 2 35 VAL n 2 36 GLU n 2 37 SER n 2 38 ALA n 2 39 PRO n 2 40 ALA n 2 41 ALA n 2 42 LEU n 2 43 LYS n 2 44 GLU n 2 45 GLY n 2 46 VAL n 2 47 SER n 2 48 LYS n 2 49 ASP n 2 50 ASP n 2 51 ALA n 2 52 GLU n 2 53 ALA n 2 54 LEU n 2 55 LYS n 2 56 LYS n 2 57 ALA n 2 58 LEU n 2 59 GLU n 2 60 GLU n 2 61 ALA n 2 62 GLY n 2 63 ALA n 2 64 GLU n 2 65 VAL n 2 66 GLU n 2 67 VAL n 2 68 LYS n 3 1 PRO n 3 2 ILE n 3 3 PRO n 3 4 GLU n 3 5 GLU n 3 6 TYR n 3 7 LEU n 3 8 ASP n 3 9 GLN n 3 10 ALA n 3 11 ARG n 3 12 GLU n 3 13 TYR n 3 14 HIS n 3 15 GLU n 3 16 LYS n 3 17 LEU n 3 18 VAL n 3 19 GLU n 3 20 VAL n 3 21 ALA n 3 22 ALA n 3 23 ASP n 3 24 PHE n 3 25 ASP n 3 26 GLU n 3 27 ASN n 3 28 ILE n 3 29 MET n 3 30 LEU n 3 31 LYS n 3 32 TYR n 3 33 LEU n 3 34 GLU n 3 35 GLY n 3 36 GLU n 3 37 GLU n 3 38 PRO n 3 39 THR n 3 40 GLU n 3 41 GLU n 3 42 GLU n 3 43 LEU n 3 44 VAL n 3 45 ALA n 3 46 ALA n 3 47 ILE n 3 48 ARG n 3 49 LYS n 3 50 GLY n 3 51 THR n 3 52 ILE n 3 53 ASP n 3 54 LEU n 3 55 LYS n 3 56 ILE n 3 57 THR n 3 58 PRO n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Thermotoga maritima' 2336 Thermotoga ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? ? 'Thermus thermophilus' 274 Thermus ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 8 8 GLN GLN A . n A 1 2 ILE 2 9 9 ILE ILE A . n A 1 3 LYS 3 10 10 LYS LYS A . n A 1 4 LEU 4 11 11 LEU LEU A . n A 1 5 GLN 5 12 12 GLN GLN A . n A 1 6 LEU 6 13 13 LEU LEU A . n A 1 7 PRO 7 14 14 PRO PRO A . n A 1 8 ALA 8 15 15 ALA ALA A . n A 1 9 GLY 9 16 16 GLY GLY A . n A 1 10 LYS 10 17 17 LYS LYS A . n A 1 11 ALA 11 18 18 ALA ALA A . n A 1 12 THR 12 19 19 THR THR A . n A 1 13 PRO 13 20 20 PRO PRO A . n A 1 14 ALA 14 21 21 ALA ALA A . n A 1 15 PRO 15 22 22 PRO PRO A . n A 1 16 PRO 16 23 23 PRO PRO A . n A 1 17 VAL 17 24 24 VAL VAL A . n A 1 18 GLY 18 25 25 GLY GLY A . n A 1 19 PRO 19 26 26 PRO PRO A . n A 1 20 ALA 20 27 27 ALA ALA A . n A 1 21 LEU 21 28 28 LEU LEU A . n A 1 22 GLY 22 29 29 GLY GLY A . n A 1 23 GLN 23 30 30 GLN GLN A . n A 1 24 HIS 24 31 31 HIS HIS A . n A 1 25 GLY 25 32 32 GLY GLY A . n A 1 26 VAL 26 33 33 VAL VAL A . n A 1 27 ASN 27 34 34 ASN ASN A . n A 1 28 ILE 28 35 35 ILE ILE A . n A 1 29 MET 29 36 36 MET MET A . n A 1 30 GLU 30 37 37 GLU GLU A . n A 1 31 PHE 31 38 38 PHE PHE A . n A 1 32 CYS 32 39 39 CYS CYS A . n A 1 33 LYS 33 40 40 LYS LYS A . n A 1 34 ARG 34 41 41 ARG ARG A . n A 1 35 PHE 35 42 42 PHE PHE A . n A 1 36 ASN 36 43 43 ASN ASN A . n A 1 37 ALA 37 44 44 ALA ALA A . n A 1 38 GLU 38 45 45 GLU GLU A . n A 1 39 THR 39 46 46 THR THR A . n A 1 40 ALA 40 47 47 ALA ALA A . n A 1 41 ASP 41 48 48 ASP ASP A . n A 1 42 LYS 42 49 49 LYS LYS A . n A 1 43 ALA 43 50 50 ALA ALA A . n A 1 44 GLY 44 51 51 GLY GLY A . n A 1 45 MET 45 52 52 MET MET A . n A 1 46 ILE 46 53 53 ILE ILE A . n A 1 47 LEU 47 54 54 LEU LEU A . n A 1 48 PRO 48 55 55 PRO PRO A . n A 1 49 VAL 49 56 56 VAL VAL A . n A 1 50 VAL 50 57 57 VAL VAL A . n A 1 51 ILE 51 58 58 ILE ILE A . n A 1 52 THR 52 59 59 THR THR A . n A 1 53 VAL 53 60 60 VAL VAL A . n A 1 54 TYR 54 61 61 TYR TYR A . n A 1 55 GLU 55 62 62 GLU GLU A . n A 1 56 ASP 56 63 63 ASP ASP A . n A 1 57 LYS 57 64 64 LYS LYS A . n A 1 58 SER 58 65 65 SER SER A . n A 1 59 PHE 59 66 66 PHE PHE A . n A 1 60 THR 60 67 67 THR THR A . n A 1 61 PHE 61 68 68 PHE PHE A . n A 1 62 ILE 62 69 69 ILE ILE A . n A 1 63 ILE 63 70 70 ILE ILE A . n A 1 64 LYS 64 71 71 LYS LYS A . n A 1 65 THR 65 72 72 THR THR A . n B 2 1 GLU 1 53 53 GLU GLU B . n B 2 2 PHE 2 54 54 PHE PHE B . n B 2 3 ASP 3 55 55 ASP ASP B . n B 2 4 VAL 4 56 56 VAL VAL B . n B 2 5 ILE 5 57 57 ILE ILE B . n B 2 6 LEU 6 58 58 LEU LEU B . n B 2 7 LYS 7 59 59 LYS LYS B . n B 2 8 ALA 8 60 60 ALA ALA B . n B 2 9 ALA 9 61 61 ALA ALA B . n B 2 10 GLY 10 62 62 GLY GLY B . n B 2 11 ALA 11 63 63 ALA ALA B . n B 2 12 ASN 12 64 64 ASN ASN B . n B 2 13 LYS 13 65 65 LYS LYS B . n B 2 14 VAL 14 66 66 VAL VAL B . n B 2 15 ALA 15 67 67 ALA ALA B . n B 2 16 VAL 16 68 68 VAL VAL B . n B 2 17 ILE 17 69 69 ILE ILE B . n B 2 18 LYS 18 70 70 LYS LYS B . n B 2 19 ALA 19 71 71 ALA ALA B . n B 2 20 VAL 20 72 72 VAL VAL B . n B 2 21 ARG 21 73 73 ARG ARG B . n B 2 22 GLY 22 74 74 GLY GLY B . n B 2 23 ALA 23 75 75 ALA ALA B . n B 2 24 THR 24 76 76 THR THR B . n B 2 25 GLY 25 77 77 GLY GLY B . n B 2 26 LEU 26 78 78 LEU LEU B . n B 2 27 GLY 27 79 79 GLY GLY B . n B 2 28 LEU 28 80 80 LEU LEU B . n B 2 29 LYS 29 81 81 LYS LYS B . n B 2 30 GLU 30 82 82 GLU GLU B . n B 2 31 ALA 31 83 83 ALA ALA B . n B 2 32 LYS 32 84 84 LYS LYS B . n B 2 33 ASP 33 85 85 ASP ASP B . n B 2 34 LEU 34 86 86 LEU LEU B . n B 2 35 VAL 35 87 87 VAL VAL B . n B 2 36 GLU 36 88 88 GLU GLU B . n B 2 37 SER 37 89 89 SER SER B . n B 2 38 ALA 38 90 90 ALA ALA B . n B 2 39 PRO 39 91 91 PRO PRO B . n B 2 40 ALA 40 92 92 ALA ALA B . n B 2 41 ALA 41 93 93 ALA ALA B . n B 2 42 LEU 42 94 94 LEU LEU B . n B 2 43 LYS 43 95 95 LYS LYS B . n B 2 44 GLU 44 96 96 GLU GLU B . n B 2 45 GLY 45 97 97 GLY GLY B . n B 2 46 VAL 46 98 98 VAL VAL B . n B 2 47 SER 47 99 99 SER SER B . n B 2 48 LYS 48 100 100 LYS LYS B . n B 2 49 ASP 49 101 101 ASP ASP B . n B 2 50 ASP 50 102 102 ASP ASP B . n B 2 51 ALA 51 103 103 ALA ALA B . n B 2 52 GLU 52 104 104 GLU GLU B . n B 2 53 ALA 53 105 105 ALA ALA B . n B 2 54 LEU 54 106 106 LEU LEU B . n B 2 55 LYS 55 107 107 LYS LYS B . n B 2 56 LYS 56 108 108 LYS LYS B . n B 2 57 ALA 57 109 109 ALA ALA B . n B 2 58 LEU 58 110 110 LEU LEU B . n B 2 59 GLU 59 111 111 GLU GLU B . n B 2 60 GLU 60 112 112 GLU GLU B . n B 2 61 ALA 61 113 113 ALA ALA B . n B 2 62 GLY 62 114 114 GLY GLY B . n B 2 63 ALA 63 115 115 ALA ALA B . n B 2 64 GLU 64 116 116 GLU GLU B . n B 2 65 VAL 65 117 117 VAL VAL B . n B 2 66 GLU 66 118 118 GLU GLU B . n B 2 67 VAL 67 119 119 VAL VAL B . n B 2 68 LYS 68 120 120 LYS LYS B . n C 3 1 PRO 1 200 200 PRO PRO C . n C 3 2 ILE 2 201 201 ILE ILE C . n C 3 3 PRO 3 202 202 PRO PRO C . n C 3 4 GLU 4 203 203 GLU GLU C . n C 3 5 GLU 5 204 204 GLU GLU C . n C 3 6 TYR 6 205 205 TYR TYR C . n C 3 7 LEU 7 206 206 LEU LEU C . n C 3 8 ASP 8 207 207 ASP ASP C . n C 3 9 GLN 9 208 208 GLN ASN C . n C 3 10 ALA 10 209 209 ALA ALA C . n C 3 11 ARG 11 210 210 ARG ARG C . n C 3 12 GLU 12 211 211 GLU GLU C . n C 3 13 TYR 13 212 212 TYR TYR C . n C 3 14 HIS 14 213 213 HIS HIS C . n C 3 15 GLU 15 214 214 GLU GLU C . n C 3 16 LYS 16 215 215 LYS LYS C . n C 3 17 LEU 17 216 216 LEU LEU C . n C 3 18 VAL 18 217 217 VAL VAL C . n C 3 19 GLU 19 218 218 GLU GLU C . n C 3 20 VAL 20 219 219 VAL VAL C . n C 3 21 ALA 21 220 220 ALA ALA C . n C 3 22 ALA 22 221 221 ALA ALA C . n C 3 23 ASP 23 222 222 ASP ASP C . n C 3 24 PHE 24 223 223 PHE PHE C . n C 3 25 ASP 25 224 224 ASP ASP C . n C 3 26 GLU 26 225 225 GLU GLU C . n C 3 27 ASN 27 226 226 ASN ASN C . n C 3 28 ILE 28 227 227 ILE ILE C . n C 3 29 MET 29 228 228 MET MET C . n C 3 30 LEU 30 229 229 LEU LEU C . n C 3 31 LYS 31 230 230 LYS LYS C . n C 3 32 TYR 32 231 231 TYR TYR C . n C 3 33 LEU 33 232 232 LEU LEU C . n C 3 34 GLU 34 233 233 GLU GLU C . n C 3 35 GLY 35 234 234 GLY GLY C . n C 3 36 GLU 36 235 235 GLU GLU C . n C 3 37 GLU 37 236 236 GLU GLU C . n C 3 38 PRO 38 237 237 PRO PRO C . n C 3 39 THR 39 238 238 THR THR C . n C 3 40 GLU 40 239 239 GLU GLU C . n C 3 41 GLU 41 240 240 GLU GLU C . n C 3 42 GLU 42 241 241 GLU GLU C . n C 3 43 LEU 43 242 242 LEU LEU C . n C 3 44 VAL 44 243 243 VAL VAL C . n C 3 45 ALA 45 244 244 ALA ALA C . n C 3 46 ALA 46 245 245 ALA ALA C . n C 3 47 ILE 47 246 246 ILE ILE C . n C 3 48 ARG 48 247 247 ARG ARG C . n C 3 49 LYS 49 248 248 LYS LYS C . n C 3 50 GLY 50 249 249 GLY GLY C . n C 3 51 THR 51 250 250 THR THR C . n C 3 52 ILE 52 251 251 ILE ILE C . n C 3 53 ASP 53 252 252 ASP ASP C . n C 3 54 LEU 54 253 253 LEU LEU C . n C 3 55 LYS 55 254 254 LYS LYS C . n C 3 56 ILE 56 255 255 ILE ILE C . n C 3 57 THR 57 256 256 THR THR C . n C 3 58 PRO 58 257 257 PRO PRO C . n # _exptl.entry_id 2BCW _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 191 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 191 _refine_hist.d_res_high . _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 2BCW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2BCW _struct.title ;Coordinates of the N-terminal domain of ribosomal protein L11,C-terminal domain of ribosomal protein L7/L12 and a portion of the G' domain of elongation factor G, as fitted into cryo-em map of an Escherichia coli 70S*EF-G*GDP*fusidic acid complex ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BCW _struct_keywords.pdbx_keywords RIBOSOME _struct_keywords.text 'Components involved in interaction between EF-G AND L7/L12 stalk base of the ribosome, RIBOSOME' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RL11_THEMA P29395 1 QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKT 7 ? 2 UNP RL7_ECOLI P0A7K2 2 EFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEVK 53 ? 3 UNP EFG_THETH P13551 3 PIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITP 200 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2BCW A 1 ? 65 ? P29395 7 ? 71 ? 8 72 2 2 2BCW B 1 ? 68 ? P0A7K2 53 ? 120 ? 53 120 3 3 2BCW C 1 ? 58 ? P13551 200 ? 257 ? 200 257 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 2BCW _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ;The X-ray crystallographic structure of the EF-G individual domains were fitted into the cryo-EM map of the 70S*EF-G-UG*GDP*Fusidic acid complex using O. The G' domain within domain I was separately fitted, using a combination of manual rigid-body docking and flexible docking approaches, and taking into consideration both the cryo-EM envelope and the positional constraints imposed by the UG density. X-ray crystallographic structures of the N-terminal domain of protein L11 and C-terminal domain of protein L7/L12 were fitted as rigid bodies. ; _em_3d_fitting.details ;METHOD--A COMBINATION OF MANUAL RIGID-BODY DOCKING AND FLEXIBLE DOCKING REFINEMENT PROTOCOL--A COMBINATION OF MANUAL RIGID-BODY DOCKING AND FLEXIBLE DOCKING ; _em_3d_fitting.method ? # loop_ _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.details _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.chain_id _em_3d_fitting_list.chain_residue_range _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_3d_fitting_list.accession_code 1 1 1MMS ? ? 1 ? ? ? PDB 'experimental model' 1MMS 1 2 1CTF ? ? 2 ? ? ? PDB 'experimental model' 1CTF 1 3 1ELO ? ? 3 ? ? ? PDB 'experimental model' 1ELO # _em_3d_reconstruction.entry_id 2BCW _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'REFERENCE BASED ALIGNMENT' _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size 2.76 _em_3d_reconstruction.resolution 11.2 _em_3d_reconstruction.magnification_calibration TMV _em_3d_reconstruction.details 'PROJECTION MATCHING USING SPIDER PACKAGE' _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '20mM HEPES-KOH (pH 7.5), 6mM MgCl2, and 150 mM NH4Cl, 2mM spermidine, 0.4 mM spermine' _em_buffer.pH 7.5 _em_buffer.details '20mM HEPES-KOH (pH 7.5), 6mM MgCl2, and 150 mM NH4Cl, 2mM spermidine, 0.4 mM spermine' # loop_ _em_entity_assembly.id _em_entity_assembly.name _em_entity_assembly.type _em_entity_assembly.parent_id _em_entity_assembly.synonym _em_entity_assembly.details _em_entity_assembly.oligomeric_details 1 '70S*EF-G*GDP*FUSIDIC ACID COMPLEX' RIBOSOME 0 ? 'ESCHERICHIA COLI 70S RIBOSOME COMPLEXED WITH EF-G (LABELED WITH UNDECAGOLD(UG)),GDP AND FUSIDIC ACID' ? 2 '50S ribosomal protein L11' ? 1 ? ? ? 3 '50S ribosomal protein L7/L12' ? 1 ? ? ? 4 'Elongation factor G' ? 1 ? ? ? # _em_imaging.entry_id 2BCW _em_imaging.id 1 _em_imaging.specimen_id 1 _em_imaging.date 2004-11-09 _em_imaging.temperature 93.00 _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.nominal_defocus_min -0.7 _em_imaging.nominal_defocus_max -3.5 _em_imaging.tilt_angle_min 0.00 _em_imaging.tilt_angle_max 0.00 _em_imaging.nominal_cs 2.0 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification 50760 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'QUANTIFOIL HOLEY CARBON FILM GRIDS' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_vitrification.entry_id 2BCW _em_vitrification.id 1 _em_vitrification.details 'RAPID-FREEZING IN LIQUID ETHANE' _em_vitrification.citation_id ? _em_vitrification.cryogen_name ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.specimen_id 1 _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 2BCW _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 2BCW _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TYR N N N N 318 TYR CA C N S 319 TYR C C N N 320 TYR O O N N 321 TYR CB C N N 322 TYR CG C Y N 323 TYR CD1 C Y N 324 TYR CD2 C Y N 325 TYR CE1 C Y N 326 TYR CE2 C Y N 327 TYR CZ C Y N 328 TYR OH O N N 329 TYR OXT O N N 330 TYR H H N N 331 TYR H2 H N N 332 TYR HA H N N 333 TYR HB2 H N N 334 TYR HB3 H N N 335 TYR HD1 H N N 336 TYR HD2 H N N 337 TYR HE1 H N N 338 TYR HE2 H N N 339 TYR HH H N N 340 TYR HXT H N N 341 VAL N N N N 342 VAL CA C N S 343 VAL C C N N 344 VAL O O N N 345 VAL CB C N N 346 VAL CG1 C N N 347 VAL CG2 C N N 348 VAL OXT O N N 349 VAL H H N N 350 VAL H2 H N N 351 VAL HA H N N 352 VAL HB H N N 353 VAL HG11 H N N 354 VAL HG12 H N N 355 VAL HG13 H N N 356 VAL HG21 H N N 357 VAL HG22 H N N 358 VAL HG23 H N N 359 VAL HXT H N N 360 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TYR N CA sing N N 304 TYR N H sing N N 305 TYR N H2 sing N N 306 TYR CA C sing N N 307 TYR CA CB sing N N 308 TYR CA HA sing N N 309 TYR C O doub N N 310 TYR C OXT sing N N 311 TYR CB CG sing N N 312 TYR CB HB2 sing N N 313 TYR CB HB3 sing N N 314 TYR CG CD1 doub Y N 315 TYR CG CD2 sing Y N 316 TYR CD1 CE1 sing Y N 317 TYR CD1 HD1 sing N N 318 TYR CD2 CE2 doub Y N 319 TYR CD2 HD2 sing N N 320 TYR CE1 CZ doub Y N 321 TYR CE1 HE1 sing N N 322 TYR CE2 CZ sing Y N 323 TYR CE2 HE2 sing N N 324 TYR CZ OH sing N N 325 TYR OH HH sing N N 326 TYR OXT HXT sing N N 327 VAL N CA sing N N 328 VAL N H sing N N 329 VAL N H2 sing N N 330 VAL CA C sing N N 331 VAL CA CB sing N N 332 VAL CA HA sing N N 333 VAL C O doub N N 334 VAL C OXT sing N N 335 VAL CB CG1 sing N N 336 VAL CB CG2 sing N N 337 VAL CB HB sing N N 338 VAL CG1 HG11 sing N N 339 VAL CG1 HG12 sing N N 340 VAL CG1 HG13 sing N N 341 VAL CG2 HG21 sing N N 342 VAL CG2 HG22 sing N N 343 VAL CG2 HG23 sing N N 344 VAL OXT HXT sing N N 345 # _em_ctf_correction.id 1 _em_ctf_correction.details 'CTF CORRECTION OF 3D MAPS BY WIENER FILTRATION' _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.avg_electron_dose_per_image 20 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 OTHER ? 'MODEL FITTING' 'MANUAL AND FLEXIBLE' ? 2 SPIDER ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 0.03 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_coordinate_model.asym_id _pdbx_coordinate_model.type A 'CA ATOMS ONLY' B 'CA ATOMS ONLY' C 'CA ATOMS ONLY' # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code 1 'experimental model' PDB 1MMS 2 'experimental model' PDB 1CTF 3 'experimental model' PDB 1ELO # _atom_sites.entry_id 2BCW _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_type.symbol C # loop_