data_2BDJ # _entry.id 2BDJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2BDJ RCSB RCSB034968 WWPDB D_1000034968 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2BDF _pdbx_database_related.details 'Related complex' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BDJ _pdbx_database_status.recvd_initial_deposition_date 2005-10-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dalgarno, D.' 1 'Stehle, T.' 2 'Schelling, P.' 3 'Narula, S.' 4 'Sawyer, T.' 5 # _citation.id primary _citation.title 'Structural basis of Src tyrosine kinase inhibition with a new class of potent and selective trisubstituted purine-based compounds.' _citation.journal_abbrev 'Chem.Biol.Drug Des.' _citation.journal_volume 67 _citation.page_first 46 _citation.page_last 57 _citation.year 2006 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1747-0277 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16492148 _citation.pdbx_database_id_DOI 10.1111/j.1747-0285.2005.00316.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Dalgarno, D.' 1 primary 'Stehle, T.' 2 primary 'Narula, S.' 3 primary 'Schelling, P.' 4 primary 'van Schravendijk, M.R.' 5 primary 'Adams, S.' 6 primary 'Andrade, L.' 7 primary 'Keats, J.' 8 primary 'Ram, M.' 9 primary 'Jin, L.' 10 primary 'Grossman, T.' 11 primary 'MacNeil, I.' 12 primary 'Metcalf III, C.' 13 primary 'Shakespeare, W.' 14 primary 'Wang, Y.' 15 primary 'Keenan, T.' 16 primary 'Sundaramoorthi, R.' 17 primary 'Bohacek, R.' 18 primary 'Weigele, M.' 19 primary 'Sawyer, T.' 20 # _cell.entry_id 2BDJ _cell.length_a 42.1 _cell.length_b 54.6 _cell.length_c 69.0 _cell.angle_alpha 90 _cell.angle_beta 99.97 _cell.angle_gamma 90 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2BDJ _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Proto-oncogene tyrosine-protein kinase Src' 31969.771 1 2.7.1.112 ? 'kinase domain' ? 2 non-polymer syn '3-[2-(2-CYCLOPENTYL-6-{[4-(DIMETHYLPHOSPHORYL)PHENYL]AMINO}-9H-PURIN-9-YL)ETHYL]PHENOL' 475.522 1 ? ? ? ? 3 water nat water 18.015 161 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'p60-Src, c-Src, pp60c-src' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDN EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDL MCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQPGENL ; _entity_poly.pdbx_seq_one_letter_code_can ;LAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDN EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDL MCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQPGENL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 ALA n 1 3 LYS n 1 4 ASP n 1 5 ALA n 1 6 TRP n 1 7 GLU n 1 8 ILE n 1 9 PRO n 1 10 ARG n 1 11 GLU n 1 12 SER n 1 13 LEU n 1 14 ARG n 1 15 LEU n 1 16 GLU n 1 17 VAL n 1 18 LYS n 1 19 LEU n 1 20 GLY n 1 21 GLN n 1 22 GLY n 1 23 CYS n 1 24 PHE n 1 25 GLY n 1 26 GLU n 1 27 VAL n 1 28 TRP n 1 29 MET n 1 30 GLY n 1 31 THR n 1 32 TRP n 1 33 ASN n 1 34 GLY n 1 35 THR n 1 36 THR n 1 37 ARG n 1 38 VAL n 1 39 ALA n 1 40 ILE n 1 41 LYS n 1 42 THR n 1 43 LEU n 1 44 LYS n 1 45 PRO n 1 46 GLY n 1 47 THR n 1 48 MET n 1 49 SER n 1 50 PRO n 1 51 GLU n 1 52 ALA n 1 53 PHE n 1 54 LEU n 1 55 GLN n 1 56 GLU n 1 57 ALA n 1 58 GLN n 1 59 VAL n 1 60 MET n 1 61 LYS n 1 62 LYS n 1 63 LEU n 1 64 ARG n 1 65 HIS n 1 66 GLU n 1 67 LYS n 1 68 LEU n 1 69 VAL n 1 70 GLN n 1 71 LEU n 1 72 TYR n 1 73 ALA n 1 74 VAL n 1 75 VAL n 1 76 SER n 1 77 GLU n 1 78 GLU n 1 79 PRO n 1 80 ILE n 1 81 TYR n 1 82 ILE n 1 83 VAL n 1 84 THR n 1 85 GLU n 1 86 TYR n 1 87 MET n 1 88 SER n 1 89 LYS n 1 90 GLY n 1 91 SER n 1 92 LEU n 1 93 LEU n 1 94 ASP n 1 95 PHE n 1 96 LEU n 1 97 LYS n 1 98 GLY n 1 99 GLU n 1 100 THR n 1 101 GLY n 1 102 LYS n 1 103 TYR n 1 104 LEU n 1 105 ARG n 1 106 LEU n 1 107 PRO n 1 108 GLN n 1 109 LEU n 1 110 VAL n 1 111 ASP n 1 112 MET n 1 113 ALA n 1 114 ALA n 1 115 GLN n 1 116 ILE n 1 117 ALA n 1 118 SER n 1 119 GLY n 1 120 MET n 1 121 ALA n 1 122 TYR n 1 123 VAL n 1 124 GLU n 1 125 ARG n 1 126 MET n 1 127 ASN n 1 128 TYR n 1 129 VAL n 1 130 HIS n 1 131 ARG n 1 132 ASP n 1 133 LEU n 1 134 ARG n 1 135 ALA n 1 136 ALA n 1 137 ASN n 1 138 ILE n 1 139 LEU n 1 140 VAL n 1 141 GLY n 1 142 GLU n 1 143 ASN n 1 144 LEU n 1 145 VAL n 1 146 CYS n 1 147 LYS n 1 148 VAL n 1 149 ALA n 1 150 ASP n 1 151 PHE n 1 152 GLY n 1 153 LEU n 1 154 ALA n 1 155 ARG n 1 156 LEU n 1 157 ILE n 1 158 GLU n 1 159 ASP n 1 160 ASN n 1 161 GLU n 1 162 TYR n 1 163 THR n 1 164 ALA n 1 165 ARG n 1 166 GLN n 1 167 GLY n 1 168 ALA n 1 169 LYS n 1 170 PHE n 1 171 PRO n 1 172 ILE n 1 173 LYS n 1 174 TRP n 1 175 THR n 1 176 ALA n 1 177 PRO n 1 178 GLU n 1 179 ALA n 1 180 ALA n 1 181 LEU n 1 182 TYR n 1 183 GLY n 1 184 ARG n 1 185 PHE n 1 186 THR n 1 187 ILE n 1 188 LYS n 1 189 SER n 1 190 ASP n 1 191 VAL n 1 192 TRP n 1 193 SER n 1 194 PHE n 1 195 GLY n 1 196 ILE n 1 197 LEU n 1 198 LEU n 1 199 THR n 1 200 GLU n 1 201 LEU n 1 202 THR n 1 203 THR n 1 204 LYS n 1 205 GLY n 1 206 ARG n 1 207 VAL n 1 208 PRO n 1 209 TYR n 1 210 PRO n 1 211 GLY n 1 212 MET n 1 213 VAL n 1 214 ASN n 1 215 ARG n 1 216 GLU n 1 217 VAL n 1 218 LEU n 1 219 ASP n 1 220 GLN n 1 221 VAL n 1 222 GLU n 1 223 ARG n 1 224 GLY n 1 225 TYR n 1 226 ARG n 1 227 MET n 1 228 PRO n 1 229 CYS n 1 230 PRO n 1 231 PRO n 1 232 GLU n 1 233 CYS n 1 234 PRO n 1 235 GLU n 1 236 SER n 1 237 LEU n 1 238 HIS n 1 239 ASP n 1 240 LEU n 1 241 MET n 1 242 CYS n 1 243 GLN n 1 244 CYS n 1 245 TRP n 1 246 ARG n 1 247 LYS n 1 248 GLU n 1 249 PRO n 1 250 GLU n 1 251 GLU n 1 252 ARG n 1 253 PRO n 1 254 THR n 1 255 PHE n 1 256 GLU n 1 257 TYR n 1 258 LEU n 1 259 GLN n 1 260 ALA n 1 261 PHE n 1 262 LEU n 1 263 GLU n 1 264 ASP n 1 265 TYR n 1 266 PHE n 1 267 THR n 1 268 SER n 1 269 THR n 1 270 GLU n 1 271 PRO n 1 272 GLN n 1 273 TYR n 1 274 GLN n 1 275 PRO n 1 276 GLY n 1 277 GLU n 1 278 ASN n 1 279 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'SRC, SRC1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fall armyworm' _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus Spodoptera _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line SF-9 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type baculovirus _entity_src_gen.pdbx_host_org_vector pFASTBAC _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SRC_HUMAN _struct_ref.pdbx_db_accession P12931 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 257 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2BDJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 279 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P12931 _struct_ref_seq.db_align_beg 257 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 535 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 255 _struct_ref_seq.pdbx_auth_seq_align_end 533 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HET non-polymer . '3-[2-(2-CYCLOPENTYL-6-{[4-(DIMETHYLPHOSPHORYL)PHENYL]AMINO}-9H-PURIN-9-YL)ETHYL]PHENOL' ? 'C26 H30 N5 O2 P' 475.522 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2BDJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_percent_sol 49.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details '20% PEG3350, 200mM NH4NO3, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date 2002-01-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2BDJ _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.5 _reflns.number_obs 9800 _reflns.number_all ? _reflns.percent_possible_obs 90.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2BDJ _refine.ls_number_reflns_obs 9800 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.158 _refine.ls_R_factor_R_free 0.277 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 980 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'pdb entry 1FMK' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details '10% of data' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2048 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 161 _refine_hist.number_atoms_total 2243 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 20.0 # _struct.entry_id 2BDJ _struct.title 'Src kinase in complex with inhibitor AP23464' _struct.pdbx_descriptor 'Proto-oncogene tyrosine-protein kinase Src (E.C.2.7.1.112)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BDJ _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'Src kinase Inhibitor, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 9 ? GLU A 11 ? PRO A 263 GLU A 265 5 ? 3 HELX_P HELX_P2 2 SER A 49 ? LEU A 63 ? SER A 303 LEU A 317 1 ? 15 HELX_P HELX_P3 3 LEU A 92 ? GLY A 98 ? LEU A 346 GLY A 352 1 ? 7 HELX_P HELX_P4 4 GLY A 98 ? TYR A 103 ? GLY A 352 TYR A 357 1 ? 6 HELX_P HELX_P5 5 ARG A 105 ? MET A 126 ? ARG A 359 MET A 380 1 ? 22 HELX_P HELX_P6 6 ARG A 134 ? ALA A 136 ? ARG A 388 ALA A 390 5 ? 3 HELX_P HELX_P7 7 ALA A 176 ? GLY A 183 ? ALA A 430 GLY A 437 1 ? 8 HELX_P HELX_P8 8 THR A 186 ? THR A 203 ? THR A 440 THR A 457 1 ? 18 HELX_P HELX_P9 9 VAL A 213 ? ARG A 223 ? VAL A 467 ARG A 477 1 ? 11 HELX_P HELX_P10 10 PRO A 234 ? TRP A 245 ? PRO A 488 TRP A 499 1 ? 12 HELX_P HELX_P11 11 GLU A 248 ? ARG A 252 ? GLU A 502 ARG A 506 5 ? 5 HELX_P HELX_P12 12 THR A 254 ? TYR A 265 ? THR A 508 TYR A 519 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 78 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 332 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 79 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 333 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.29 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 13 ? GLY A 20 ? LEU A 267 GLY A 274 A 2 GLU A 26 ? TRP A 32 ? GLU A 280 TRP A 286 A 3 THR A 36 ? THR A 42 ? THR A 290 THR A 296 A 4 TYR A 81 ? THR A 84 ? TYR A 335 THR A 338 A 5 LEU A 71 ? VAL A 75 ? LEU A 325 VAL A 329 B 1 GLY A 90 ? SER A 91 ? GLY A 344 SER A 345 B 2 ILE A 138 ? VAL A 140 ? ILE A 392 VAL A 394 B 3 CYS A 146 ? VAL A 148 ? CYS A 400 VAL A 402 C 1 TYR A 128 ? VAL A 129 ? TYR A 382 VAL A 383 C 2 ARG A 155 ? LEU A 156 ? ARG A 409 LEU A 410 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 16 ? N GLU A 270 O MET A 29 ? O MET A 283 A 2 3 N TRP A 32 ? N TRP A 286 O THR A 36 ? O THR A 290 A 3 4 N ALA A 39 ? N ALA A 293 O THR A 84 ? O THR A 338 A 4 5 O VAL A 83 ? O VAL A 337 N TYR A 72 ? N TYR A 326 B 1 2 N GLY A 90 ? N GLY A 344 O VAL A 140 ? O VAL A 394 B 2 3 N LEU A 139 ? N LEU A 393 O LYS A 147 ? O LYS A 401 C 1 2 N VAL A 129 ? N VAL A 383 O ARG A 155 ? O ARG A 409 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 16 _struct_site.details 'BINDING SITE FOR RESIDUE HET A 800' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 HOH C . ? HOH A 45 . ? 1_555 ? 2 AC1 16 LEU A 19 ? LEU A 273 . ? 1_555 ? 3 AC1 16 GLY A 20 ? GLY A 274 . ? 1_555 ? 4 AC1 16 VAL A 27 ? VAL A 281 . ? 1_555 ? 5 AC1 16 ALA A 39 ? ALA A 293 . ? 1_555 ? 6 AC1 16 LYS A 41 ? LYS A 295 . ? 1_555 ? 7 AC1 16 GLU A 56 ? GLU A 310 . ? 1_555 ? 8 AC1 16 ILE A 82 ? ILE A 336 . ? 1_555 ? 9 AC1 16 THR A 84 ? THR A 338 . ? 1_555 ? 10 AC1 16 GLU A 85 ? GLU A 339 . ? 1_555 ? 11 AC1 16 TYR A 86 ? TYR A 340 . ? 1_555 ? 12 AC1 16 MET A 87 ? MET A 341 . ? 1_555 ? 13 AC1 16 SER A 88 ? SER A 342 . ? 1_555 ? 14 AC1 16 GLY A 90 ? GLY A 344 . ? 1_555 ? 15 AC1 16 LEU A 139 ? LEU A 393 . ? 1_555 ? 16 AC1 16 ASP A 150 ? ASP A 404 . ? 1_555 ? # _database_PDB_matrix.entry_id 2BDJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2BDJ _atom_sites.fract_transf_matrix[1][1] 0.023753 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004175 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018315 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014715 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 255 ? ? ? A . n A 1 2 ALA 2 256 ? ? ? A . n A 1 3 LYS 3 257 257 LYS LYS A . n A 1 4 ASP 4 258 258 ASP ASP A . n A 1 5 ALA 5 259 259 ALA ALA A . n A 1 6 TRP 6 260 260 TRP TRP A . n A 1 7 GLU 7 261 261 GLU GLU A . n A 1 8 ILE 8 262 262 ILE ILE A . n A 1 9 PRO 9 263 263 PRO PRO A . n A 1 10 ARG 10 264 264 ARG ARG A . n A 1 11 GLU 11 265 265 GLU GLU A . n A 1 12 SER 12 266 266 SER SER A . n A 1 13 LEU 13 267 267 LEU LEU A . n A 1 14 ARG 14 268 268 ARG ARG A . n A 1 15 LEU 15 269 269 LEU LEU A . n A 1 16 GLU 16 270 270 GLU GLU A . n A 1 17 VAL 17 271 271 VAL VAL A . n A 1 18 LYS 18 272 272 LYS LYS A . n A 1 19 LEU 19 273 273 LEU LEU A . n A 1 20 GLY 20 274 274 GLY GLY A . n A 1 21 GLN 21 275 275 GLN GLN A . n A 1 22 GLY 22 276 276 GLY GLY A . n A 1 23 CYS 23 277 277 CYS CYS A . n A 1 24 PHE 24 278 278 PHE PHE A . n A 1 25 GLY 25 279 279 GLY GLY A . n A 1 26 GLU 26 280 280 GLU GLU A . n A 1 27 VAL 27 281 281 VAL VAL A . n A 1 28 TRP 28 282 282 TRP TRP A . n A 1 29 MET 29 283 283 MET MET A . n A 1 30 GLY 30 284 284 GLY GLY A . n A 1 31 THR 31 285 285 THR THR A . n A 1 32 TRP 32 286 286 TRP TRP A . n A 1 33 ASN 33 287 287 ASN ASN A . n A 1 34 GLY 34 288 288 GLY GLY A . n A 1 35 THR 35 289 289 THR THR A . n A 1 36 THR 36 290 290 THR THR A . n A 1 37 ARG 37 291 291 ARG ARG A . n A 1 38 VAL 38 292 292 VAL VAL A . n A 1 39 ALA 39 293 293 ALA ALA A . n A 1 40 ILE 40 294 294 ILE ILE A . n A 1 41 LYS 41 295 295 LYS LYS A . n A 1 42 THR 42 296 296 THR THR A . n A 1 43 LEU 43 297 297 LEU LEU A . n A 1 44 LYS 44 298 298 LYS LYS A . n A 1 45 PRO 45 299 299 PRO PRO A . n A 1 46 GLY 46 300 300 GLY GLY A . n A 1 47 THR 47 301 301 THR THR A . n A 1 48 MET 48 302 302 MET MET A . n A 1 49 SER 49 303 303 SER SER A . n A 1 50 PRO 50 304 304 PRO PRO A . n A 1 51 GLU 51 305 305 GLU GLU A . n A 1 52 ALA 52 306 306 ALA ALA A . n A 1 53 PHE 53 307 307 PHE PHE A . n A 1 54 LEU 54 308 308 LEU LEU A . n A 1 55 GLN 55 309 309 GLN GLN A . n A 1 56 GLU 56 310 310 GLU GLU A . n A 1 57 ALA 57 311 311 ALA ALA A . n A 1 58 GLN 58 312 312 GLN GLN A . n A 1 59 VAL 59 313 313 VAL VAL A . n A 1 60 MET 60 314 314 MET MET A . n A 1 61 LYS 61 315 315 LYS LYS A . n A 1 62 LYS 62 316 316 LYS LYS A . n A 1 63 LEU 63 317 317 LEU LEU A . n A 1 64 ARG 64 318 318 ARG ARG A . n A 1 65 HIS 65 319 319 HIS HIS A . n A 1 66 GLU 66 320 320 GLU GLU A . n A 1 67 LYS 67 321 321 LYS LYS A . n A 1 68 LEU 68 322 322 LEU LEU A . n A 1 69 VAL 69 323 323 VAL VAL A . n A 1 70 GLN 70 324 324 GLN GLN A . n A 1 71 LEU 71 325 325 LEU LEU A . n A 1 72 TYR 72 326 326 TYR TYR A . n A 1 73 ALA 73 327 327 ALA ALA A . n A 1 74 VAL 74 328 328 VAL VAL A . n A 1 75 VAL 75 329 329 VAL VAL A . n A 1 76 SER 76 330 330 SER SER A . n A 1 77 GLU 77 331 331 GLU GLU A . n A 1 78 GLU 78 332 332 GLU GLU A . n A 1 79 PRO 79 333 333 PRO PRO A . n A 1 80 ILE 80 334 334 ILE ILE A . n A 1 81 TYR 81 335 335 TYR TYR A . n A 1 82 ILE 82 336 336 ILE ILE A . n A 1 83 VAL 83 337 337 VAL VAL A . n A 1 84 THR 84 338 338 THR THR A . n A 1 85 GLU 85 339 339 GLU GLU A . n A 1 86 TYR 86 340 340 TYR TYR A . n A 1 87 MET 87 341 341 MET MET A . n A 1 88 SER 88 342 342 SER SER A . n A 1 89 LYS 89 343 343 LYS LYS A . n A 1 90 GLY 90 344 344 GLY GLY A . n A 1 91 SER 91 345 345 SER SER A . n A 1 92 LEU 92 346 346 LEU LEU A . n A 1 93 LEU 93 347 347 LEU LEU A . n A 1 94 ASP 94 348 348 ASP ASP A . n A 1 95 PHE 95 349 349 PHE PHE A . n A 1 96 LEU 96 350 350 LEU LEU A . n A 1 97 LYS 97 351 351 LYS LYS A . n A 1 98 GLY 98 352 352 GLY GLY A . n A 1 99 GLU 99 353 353 GLU GLU A . n A 1 100 THR 100 354 354 THR THR A . n A 1 101 GLY 101 355 355 GLY GLY A . n A 1 102 LYS 102 356 356 LYS LYS A . n A 1 103 TYR 103 357 357 TYR TYR A . n A 1 104 LEU 104 358 358 LEU LEU A . n A 1 105 ARG 105 359 359 ARG ARG A . n A 1 106 LEU 106 360 360 LEU LEU A . n A 1 107 PRO 107 361 361 PRO PRO A . n A 1 108 GLN 108 362 362 GLN GLN A . n A 1 109 LEU 109 363 363 LEU LEU A . n A 1 110 VAL 110 364 364 VAL VAL A . n A 1 111 ASP 111 365 365 ASP ASP A . n A 1 112 MET 112 366 366 MET MET A . n A 1 113 ALA 113 367 367 ALA ALA A . n A 1 114 ALA 114 368 368 ALA ALA A . n A 1 115 GLN 115 369 369 GLN GLN A . n A 1 116 ILE 116 370 370 ILE ILE A . n A 1 117 ALA 117 371 371 ALA ALA A . n A 1 118 SER 118 372 372 SER SER A . n A 1 119 GLY 119 373 373 GLY GLY A . n A 1 120 MET 120 374 374 MET MET A . n A 1 121 ALA 121 375 375 ALA ALA A . n A 1 122 TYR 122 376 376 TYR TYR A . n A 1 123 VAL 123 377 377 VAL VAL A . n A 1 124 GLU 124 378 378 GLU GLU A . n A 1 125 ARG 125 379 379 ARG ARG A . n A 1 126 MET 126 380 380 MET MET A . n A 1 127 ASN 127 381 381 ASN ASN A . n A 1 128 TYR 128 382 382 TYR TYR A . n A 1 129 VAL 129 383 383 VAL VAL A . n A 1 130 HIS 130 384 384 HIS HIS A . n A 1 131 ARG 131 385 385 ARG ARG A . n A 1 132 ASP 132 386 386 ASP ASP A . n A 1 133 LEU 133 387 387 LEU LEU A . n A 1 134 ARG 134 388 388 ARG ARG A . n A 1 135 ALA 135 389 389 ALA ALA A . n A 1 136 ALA 136 390 390 ALA ALA A . n A 1 137 ASN 137 391 391 ASN ASN A . n A 1 138 ILE 138 392 392 ILE ILE A . n A 1 139 LEU 139 393 393 LEU LEU A . n A 1 140 VAL 140 394 394 VAL VAL A . n A 1 141 GLY 141 395 395 GLY GLY A . n A 1 142 GLU 142 396 396 GLU GLU A . n A 1 143 ASN 143 397 397 ASN ASN A . n A 1 144 LEU 144 398 398 LEU LEU A . n A 1 145 VAL 145 399 399 VAL VAL A . n A 1 146 CYS 146 400 400 CYS CYS A . n A 1 147 LYS 147 401 401 LYS LYS A . n A 1 148 VAL 148 402 402 VAL VAL A . n A 1 149 ALA 149 403 403 ALA ALA A . n A 1 150 ASP 150 404 404 ASP ASP A . n A 1 151 PHE 151 405 405 PHE PHE A . n A 1 152 GLY 152 406 406 GLY GLY A . n A 1 153 LEU 153 407 407 LEU LEU A . n A 1 154 ALA 154 408 408 ALA ALA A . n A 1 155 ARG 155 409 409 ARG ARG A . n A 1 156 LEU 156 410 410 LEU LEU A . n A 1 157 ILE 157 411 411 ILE ILE A . n A 1 158 GLU 158 412 412 GLU GLU A . n A 1 159 ASP 159 413 ? ? ? A . n A 1 160 ASN 160 414 ? ? ? A . n A 1 161 GLU 161 415 ? ? ? A . n A 1 162 TYR 162 416 ? ? ? A . n A 1 163 THR 163 417 ? ? ? A . n A 1 164 ALA 164 418 ? ? ? A . n A 1 165 ARG 165 419 ? ? ? A . n A 1 166 GLN 166 420 ? ? ? A . n A 1 167 GLY 167 421 ? ? ? A . n A 1 168 ALA 168 422 ? ? ? A . n A 1 169 LYS 169 423 ? ? ? A . n A 1 170 PHE 170 424 424 PHE PHE A . n A 1 171 PRO 171 425 425 PRO PRO A . n A 1 172 ILE 172 426 426 ILE ILE A . n A 1 173 LYS 173 427 427 LYS LYS A . n A 1 174 TRP 174 428 428 TRP TRP A . n A 1 175 THR 175 429 429 THR THR A . n A 1 176 ALA 176 430 430 ALA ALA A . n A 1 177 PRO 177 431 431 PRO PRO A . n A 1 178 GLU 178 432 432 GLU GLU A . n A 1 179 ALA 179 433 433 ALA ALA A . n A 1 180 ALA 180 434 434 ALA ALA A . n A 1 181 LEU 181 435 435 LEU LEU A . n A 1 182 TYR 182 436 436 TYR TYR A . n A 1 183 GLY 183 437 437 GLY GLY A . n A 1 184 ARG 184 438 438 ARG ARG A . n A 1 185 PHE 185 439 439 PHE PHE A . n A 1 186 THR 186 440 440 THR THR A . n A 1 187 ILE 187 441 441 ILE ILE A . n A 1 188 LYS 188 442 442 LYS LYS A . n A 1 189 SER 189 443 443 SER SER A . n A 1 190 ASP 190 444 444 ASP ASP A . n A 1 191 VAL 191 445 445 VAL VAL A . n A 1 192 TRP 192 446 446 TRP TRP A . n A 1 193 SER 193 447 447 SER SER A . n A 1 194 PHE 194 448 448 PHE PHE A . n A 1 195 GLY 195 449 449 GLY GLY A . n A 1 196 ILE 196 450 450 ILE ILE A . n A 1 197 LEU 197 451 451 LEU LEU A . n A 1 198 LEU 198 452 452 LEU LEU A . n A 1 199 THR 199 453 453 THR THR A . n A 1 200 GLU 200 454 454 GLU GLU A . n A 1 201 LEU 201 455 455 LEU LEU A . n A 1 202 THR 202 456 456 THR THR A . n A 1 203 THR 203 457 457 THR THR A . n A 1 204 LYS 204 458 458 LYS LYS A . n A 1 205 GLY 205 459 459 GLY GLY A . n A 1 206 ARG 206 460 460 ARG ARG A . n A 1 207 VAL 207 461 461 VAL VAL A . n A 1 208 PRO 208 462 462 PRO PRO A . n A 1 209 TYR 209 463 463 TYR TYR A . n A 1 210 PRO 210 464 464 PRO PRO A . n A 1 211 GLY 211 465 465 GLY GLY A . n A 1 212 MET 212 466 466 MET MET A . n A 1 213 VAL 213 467 467 VAL VAL A . n A 1 214 ASN 214 468 468 ASN ASN A . n A 1 215 ARG 215 469 469 ARG ARG A . n A 1 216 GLU 216 470 470 GLU GLU A . n A 1 217 VAL 217 471 471 VAL VAL A . n A 1 218 LEU 218 472 472 LEU LEU A . n A 1 219 ASP 219 473 473 ASP ASP A . n A 1 220 GLN 220 474 474 GLN GLN A . n A 1 221 VAL 221 475 475 VAL VAL A . n A 1 222 GLU 222 476 476 GLU GLU A . n A 1 223 ARG 223 477 477 ARG ARG A . n A 1 224 GLY 224 478 478 GLY GLY A . n A 1 225 TYR 225 479 479 TYR TYR A . n A 1 226 ARG 226 480 480 ARG ARG A . n A 1 227 MET 227 481 481 MET MET A . n A 1 228 PRO 228 482 482 PRO PRO A . n A 1 229 CYS 229 483 483 CYS CYS A . n A 1 230 PRO 230 484 484 PRO PRO A . n A 1 231 PRO 231 485 485 PRO PRO A . n A 1 232 GLU 232 486 486 GLU GLU A . n A 1 233 CYS 233 487 487 CYS CYS A . n A 1 234 PRO 234 488 488 PRO PRO A . n A 1 235 GLU 235 489 489 GLU GLU A . n A 1 236 SER 236 490 490 SER SER A . n A 1 237 LEU 237 491 491 LEU LEU A . n A 1 238 HIS 238 492 492 HIS HIS A . n A 1 239 ASP 239 493 493 ASP ASP A . n A 1 240 LEU 240 494 494 LEU LEU A . n A 1 241 MET 241 495 495 MET MET A . n A 1 242 CYS 242 496 496 CYS CYS A . n A 1 243 GLN 243 497 497 GLN GLN A . n A 1 244 CYS 244 498 498 CYS CYS A . n A 1 245 TRP 245 499 499 TRP TRP A . n A 1 246 ARG 246 500 500 ARG ARG A . n A 1 247 LYS 247 501 501 LYS LYS A . n A 1 248 GLU 248 502 502 GLU GLU A . n A 1 249 PRO 249 503 503 PRO PRO A . n A 1 250 GLU 250 504 504 GLU GLU A . n A 1 251 GLU 251 505 505 GLU GLU A . n A 1 252 ARG 252 506 506 ARG ARG A . n A 1 253 PRO 253 507 507 PRO PRO A . n A 1 254 THR 254 508 508 THR THR A . n A 1 255 PHE 255 509 509 PHE PHE A . n A 1 256 GLU 256 510 510 GLU GLU A . n A 1 257 TYR 257 511 511 TYR TYR A . n A 1 258 LEU 258 512 512 LEU LEU A . n A 1 259 GLN 259 513 513 GLN GLN A . n A 1 260 ALA 260 514 514 ALA ALA A . n A 1 261 PHE 261 515 515 PHE PHE A . n A 1 262 LEU 262 516 516 LEU LEU A . n A 1 263 GLU 263 517 517 GLU GLU A . n A 1 264 ASP 264 518 518 ASP ASP A . n A 1 265 TYR 265 519 519 TYR TYR A . n A 1 266 PHE 266 520 520 PHE PHE A . n A 1 267 THR 267 521 521 THR THR A . n A 1 268 SER 268 522 ? ? ? A . n A 1 269 THR 269 523 ? ? ? A . n A 1 270 GLU 270 524 ? ? ? A . n A 1 271 PRO 271 525 ? ? ? A . n A 1 272 GLN 272 526 ? ? ? A . n A 1 273 TYR 273 527 ? ? ? A . n A 1 274 GLN 274 528 ? ? ? A . n A 1 275 PRO 275 529 ? ? ? A . n A 1 276 GLY 276 530 ? ? ? A . n A 1 277 GLU 277 531 ? ? ? A . n A 1 278 ASN 278 532 ? ? ? A . n A 1 279 LEU 279 533 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-24 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 X-PLOR refinement 3.1 ? 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 487 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 488 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 488 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 128.37 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 9.07 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 258 ? ? -163.92 -166.32 2 1 GLU A 270 ? ? -127.55 -67.62 3 1 PHE A 278 ? ? -101.18 70.69 4 1 PRO A 299 ? ? -39.30 -15.69 5 1 THR A 301 ? ? -28.02 -34.26 6 1 ARG A 385 ? ? 81.79 -9.32 7 1 ASN A 397 ? ? 74.61 33.35 8 1 ASP A 404 ? ? 63.14 77.00 9 1 ASN A 468 ? ? -45.68 -77.59 10 1 GLU A 486 ? ? 77.95 -13.74 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 255 ? A LEU 1 2 1 Y 1 A ALA 256 ? A ALA 2 3 1 Y 1 A ASP 413 ? A ASP 159 4 1 Y 1 A ASN 414 ? A ASN 160 5 1 Y 1 A GLU 415 ? A GLU 161 6 1 Y 1 A TYR 416 ? A TYR 162 7 1 Y 1 A THR 417 ? A THR 163 8 1 Y 1 A ALA 418 ? A ALA 164 9 1 Y 1 A ARG 419 ? A ARG 165 10 1 Y 1 A GLN 420 ? A GLN 166 11 1 Y 1 A GLY 421 ? A GLY 167 12 1 Y 1 A ALA 422 ? A ALA 168 13 1 Y 1 A LYS 423 ? A LYS 169 14 1 Y 1 A SER 522 ? A SER 268 15 1 Y 1 A THR 523 ? A THR 269 16 1 Y 1 A GLU 524 ? A GLU 270 17 1 Y 1 A PRO 525 ? A PRO 271 18 1 Y 1 A GLN 526 ? A GLN 272 19 1 Y 1 A TYR 527 ? A TYR 273 20 1 Y 1 A GLN 528 ? A GLN 274 21 1 Y 1 A PRO 529 ? A PRO 275 22 1 Y 1 A GLY 530 ? A GLY 276 23 1 Y 1 A GLU 531 ? A GLU 277 24 1 Y 1 A ASN 532 ? A ASN 278 25 1 Y 1 A LEU 533 ? A LEU 279 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3-[2-(2-CYCLOPENTYL-6-{[4-(DIMETHYLPHOSPHORYL)PHENYL]AMINO}-9H-PURIN-9-YL)ETHYL]PHENOL' HET 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HET 1 800 800 HET HET A . C 3 HOH 1 1 1 HOH WAT A . C 3 HOH 2 2 2 HOH WAT A . C 3 HOH 3 3 3 HOH WAT A . C 3 HOH 4 4 4 HOH WAT A . C 3 HOH 5 5 5 HOH WAT A . C 3 HOH 6 6 6 HOH WAT A . C 3 HOH 7 7 7 HOH WAT A . C 3 HOH 8 8 8 HOH WAT A . C 3 HOH 9 9 9 HOH WAT A . C 3 HOH 10 10 10 HOH WAT A . C 3 HOH 11 11 11 HOH WAT A . C 3 HOH 12 12 12 HOH WAT A . C 3 HOH 13 13 13 HOH WAT A . C 3 HOH 14 14 14 HOH WAT A . C 3 HOH 15 15 15 HOH WAT A . C 3 HOH 16 16 16 HOH WAT A . C 3 HOH 17 17 17 HOH WAT A . C 3 HOH 18 18 18 HOH WAT A . C 3 HOH 19 19 19 HOH WAT A . C 3 HOH 20 20 20 HOH WAT A . C 3 HOH 21 21 21 HOH WAT A . C 3 HOH 22 22 22 HOH WAT A . C 3 HOH 23 23 23 HOH WAT A . C 3 HOH 24 24 24 HOH WAT A . C 3 HOH 25 25 25 HOH WAT A . C 3 HOH 26 26 26 HOH WAT A . C 3 HOH 27 27 27 HOH WAT A . C 3 HOH 28 28 28 HOH WAT A . C 3 HOH 29 29 29 HOH WAT A . C 3 HOH 30 30 30 HOH WAT A . C 3 HOH 31 31 31 HOH WAT A . C 3 HOH 32 32 32 HOH WAT A . C 3 HOH 33 33 33 HOH WAT A . C 3 HOH 34 34 34 HOH WAT A . C 3 HOH 35 35 35 HOH WAT A . C 3 HOH 36 36 36 HOH WAT A . C 3 HOH 37 37 37 HOH WAT A . C 3 HOH 38 38 38 HOH WAT A . C 3 HOH 39 39 39 HOH WAT A . C 3 HOH 40 40 40 HOH WAT A . C 3 HOH 41 41 41 HOH WAT A . C 3 HOH 42 42 42 HOH WAT A . C 3 HOH 43 43 43 HOH WAT A . C 3 HOH 44 44 44 HOH WAT A . C 3 HOH 45 45 45 HOH WAT A . C 3 HOH 46 46 46 HOH WAT A . C 3 HOH 47 47 47 HOH WAT A . C 3 HOH 48 48 48 HOH WAT A . C 3 HOH 49 49 49 HOH WAT A . C 3 HOH 50 50 50 HOH WAT A . C 3 HOH 51 51 51 HOH WAT A . C 3 HOH 52 52 52 HOH WAT A . C 3 HOH 53 53 53 HOH WAT A . C 3 HOH 54 54 54 HOH WAT A . C 3 HOH 55 55 55 HOH WAT A . C 3 HOH 56 56 56 HOH WAT A . C 3 HOH 57 57 57 HOH WAT A . C 3 HOH 58 58 58 HOH WAT A . C 3 HOH 59 59 59 HOH WAT A . C 3 HOH 60 60 60 HOH WAT A . C 3 HOH 61 61 61 HOH WAT A . C 3 HOH 62 62 62 HOH WAT A . C 3 HOH 63 63 63 HOH WAT A . C 3 HOH 64 64 64 HOH WAT A . C 3 HOH 65 65 65 HOH WAT A . C 3 HOH 66 66 66 HOH WAT A . C 3 HOH 67 67 67 HOH WAT A . C 3 HOH 68 68 68 HOH WAT A . C 3 HOH 69 69 69 HOH WAT A . C 3 HOH 70 70 70 HOH WAT A . C 3 HOH 71 71 71 HOH WAT A . C 3 HOH 72 72 72 HOH WAT A . C 3 HOH 73 73 73 HOH WAT A . C 3 HOH 74 74 74 HOH WAT A . C 3 HOH 75 75 75 HOH WAT A . C 3 HOH 76 76 76 HOH WAT A . C 3 HOH 77 77 77 HOH WAT A . C 3 HOH 78 78 78 HOH WAT A . C 3 HOH 79 79 79 HOH WAT A . C 3 HOH 80 80 80 HOH WAT A . C 3 HOH 81 81 81 HOH WAT A . C 3 HOH 82 82 82 HOH WAT A . C 3 HOH 83 83 83 HOH WAT A . C 3 HOH 84 84 84 HOH WAT A . C 3 HOH 85 85 85 HOH WAT A . C 3 HOH 86 86 86 HOH WAT A . C 3 HOH 87 87 87 HOH WAT A . C 3 HOH 88 88 88 HOH WAT A . C 3 HOH 89 89 89 HOH WAT A . C 3 HOH 90 90 90 HOH WAT A . C 3 HOH 91 91 91 HOH WAT A . C 3 HOH 92 92 92 HOH WAT A . C 3 HOH 93 93 93 HOH WAT A . C 3 HOH 94 94 94 HOH WAT A . C 3 HOH 95 95 95 HOH WAT A . C 3 HOH 96 96 96 HOH WAT A . C 3 HOH 97 97 97 HOH WAT A . C 3 HOH 98 98 98 HOH WAT A . C 3 HOH 99 99 99 HOH WAT A . C 3 HOH 100 100 100 HOH WAT A . C 3 HOH 101 101 101 HOH WAT A . C 3 HOH 102 102 102 HOH WAT A . C 3 HOH 103 103 103 HOH WAT A . C 3 HOH 104 104 104 HOH WAT A . C 3 HOH 105 105 105 HOH WAT A . C 3 HOH 106 106 106 HOH WAT A . C 3 HOH 107 107 107 HOH WAT A . C 3 HOH 108 108 108 HOH WAT A . C 3 HOH 109 109 109 HOH WAT A . C 3 HOH 110 110 110 HOH WAT A . C 3 HOH 111 111 111 HOH WAT A . C 3 HOH 112 112 112 HOH WAT A . C 3 HOH 113 113 113 HOH WAT A . C 3 HOH 114 114 114 HOH WAT A . C 3 HOH 115 115 115 HOH WAT A . C 3 HOH 116 116 116 HOH WAT A . C 3 HOH 117 117 117 HOH WAT A . C 3 HOH 118 118 118 HOH WAT A . C 3 HOH 119 119 119 HOH WAT A . C 3 HOH 120 120 120 HOH WAT A . C 3 HOH 121 121 121 HOH WAT A . C 3 HOH 122 122 122 HOH WAT A . C 3 HOH 123 123 123 HOH WAT A . C 3 HOH 124 124 124 HOH WAT A . C 3 HOH 125 125 125 HOH WAT A . C 3 HOH 126 126 126 HOH WAT A . C 3 HOH 127 127 127 HOH WAT A . C 3 HOH 128 128 128 HOH WAT A . C 3 HOH 129 129 129 HOH WAT A . C 3 HOH 130 130 130 HOH WAT A . C 3 HOH 131 131 131 HOH WAT A . C 3 HOH 132 132 132 HOH WAT A . C 3 HOH 133 133 133 HOH WAT A . C 3 HOH 134 134 134 HOH WAT A . C 3 HOH 135 135 135 HOH WAT A . C 3 HOH 136 136 136 HOH WAT A . C 3 HOH 137 137 137 HOH WAT A . C 3 HOH 138 138 138 HOH WAT A . C 3 HOH 139 139 139 HOH WAT A . C 3 HOH 140 140 140 HOH WAT A . C 3 HOH 141 141 141 HOH WAT A . C 3 HOH 142 142 142 HOH WAT A . C 3 HOH 143 143 143 HOH WAT A . C 3 HOH 144 144 144 HOH WAT A . C 3 HOH 145 145 145 HOH WAT A . C 3 HOH 146 146 146 HOH WAT A . C 3 HOH 147 147 147 HOH WAT A . C 3 HOH 148 148 148 HOH WAT A . C 3 HOH 149 149 149 HOH WAT A . C 3 HOH 150 150 150 HOH WAT A . C 3 HOH 151 151 151 HOH WAT A . C 3 HOH 152 152 152 HOH WAT A . C 3 HOH 153 153 153 HOH WAT A . C 3 HOH 154 154 154 HOH WAT A . C 3 HOH 155 155 155 HOH WAT A . C 3 HOH 156 156 156 HOH WAT A . C 3 HOH 157 157 157 HOH WAT A . C 3 HOH 158 158 158 HOH WAT A . C 3 HOH 159 159 159 HOH WAT A . C 3 HOH 160 160 160 HOH WAT A . C 3 HOH 161 161 161 HOH WAT A . #