HEADER TRANSFERASE 21-OCT-05 2BE3 TITLE STRUCTURE OF A GTP PYROPHOSPHOKINASE FAMILY PROTEIN FROM STREPTOCOCCUS TITLE 2 PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP PYROPHOSPHOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.6.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 GENE: SP1097; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS GTP, STREPTOCOCCUS PNEUMONIAE, PYROPHOSPHOKINASE, STRUCTURAL KEYWDS 2 GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,C.HATZOS,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 (MCSG) REVDAT 4 18-OCT-17 2BE3 1 REMARK REVDAT 3 13-JUL-11 2BE3 1 VERSN REVDAT 2 24-FEB-09 2BE3 1 VERSN REVDAT 1 06-DEC-05 2BE3 0 JRNL AUTH M.E.CUFF,C.HATZOS,A.JOACHIMIAK JRNL TITL STRUCTURE OF A GTP PYROPHOSPHOKINASE FAMILY PROTEIN FROM JRNL TITL 2 STREPTOCOCCUS PNEUMONIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 21127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1130 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1481 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3259 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 251 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.23000 REMARK 3 B22 (A**2) : -1.23000 REMARK 3 B33 (A**2) : 1.84000 REMARK 3 B12 (A**2) : -0.61000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.320 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.845 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3361 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4520 ; 1.464 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 6.307 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;34.104 ;23.989 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 650 ;19.104 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;16.687 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 495 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2510 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1483 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2300 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 243 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 85 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2023 ; 1.028 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3200 ; 1.571 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1495 ; 2.631 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1320 ; 4.066 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7550 70.9600 2.2330 REMARK 3 T TENSOR REMARK 3 T11: -0.3224 T22: -0.3568 REMARK 3 T33: -0.6889 T12: 0.0049 REMARK 3 T13: 0.0466 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.1186 L22: 1.6104 REMARK 3 L33: 2.1379 L12: -0.2256 REMARK 3 L13: 0.5197 L23: -0.0014 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: 0.0087 S13: -0.0556 REMARK 3 S21: 0.0013 S22: 0.0785 S23: 0.0144 REMARK 3 S31: -0.1598 S32: 0.0997 S33: -0.0746 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0670 44.0860 4.4560 REMARK 3 T TENSOR REMARK 3 T11: -0.2073 T22: -0.1469 REMARK 3 T33: -0.5389 T12: -0.0733 REMARK 3 T13: -0.0003 T23: -0.0766 REMARK 3 L TENSOR REMARK 3 L11: 4.1271 L22: 0.9023 REMARK 3 L33: 1.7931 L12: 1.5904 REMARK 3 L13: -1.5439 L23: -0.5377 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: -0.0851 S13: -0.1688 REMARK 3 S21: 0.0193 S22: -0.0583 S23: -0.2460 REMARK 3 S31: 0.2000 S32: 0.1194 S33: 0.0261 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2BE3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000034985. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21127 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, CCP4, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MG/ML PROTEIN, 0.2M NA MALONATE, 20% REMARK 280 PEG3350, 25% GLYCEROL, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.85400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.70800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.28100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 142.13500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.42700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.85400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 113.70800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 142.13500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 85.28100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.42700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE BIOLOGICAL ASSEMBLY OF REMARK 300 THE PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 LEU A 204 REMARK 465 SER A 205 REMARK 465 ARG A 206 REMARK 465 LYS A 207 REMARK 465 LEU A 208 REMARK 465 ASN A 209 REMARK 465 ASP A 210 REMARK 465 GLY A 211 REMARK 465 VAL A 212 REMARK 465 GLY A 213 REMARK 465 ASN A 214 REMARK 465 SER A 215 REMARK 465 ASP A 216 REMARK 465 ASP A 217 REMARK 465 THR A 218 REMARK 465 ASP A 219 REMARK 465 GLU A 220 REMARK 465 GLU A 221 REMARK 465 TYR A 222 REMARK 465 ARG A 223 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 58 REMARK 465 ARG B 59 REMARK 465 GLY B 60 REMARK 465 ILE B 61 REMARK 465 THR B 62 REMARK 465 TYR B 63 REMARK 465 ALA B 64 REMARK 465 THR B 65 REMARK 465 LEU B 66 REMARK 465 GLU B 67 REMARK 465 GLY B 163 REMARK 465 ASP B 202 REMARK 465 PRO B 203 REMARK 465 LEU B 204 REMARK 465 SER B 205 REMARK 465 ARG B 206 REMARK 465 LYS B 207 REMARK 465 LEU B 208 REMARK 465 ASN B 209 REMARK 465 ASP B 210 REMARK 465 GLY B 211 REMARK 465 VAL B 212 REMARK 465 GLY B 213 REMARK 465 ASN B 214 REMARK 465 SER B 215 REMARK 465 ASP B 216 REMARK 465 ASP B 217 REMARK 465 THR B 218 REMARK 465 ASP B 219 REMARK 465 GLU B 220 REMARK 465 GLU B 221 REMARK 465 TYR B 222 REMARK 465 ARG B 223 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS B 181 O HOH B 329 2.04 REMARK 500 O HOH B 275 O HOH B 305 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 76 CA - CB - CG ANGL. DEV. = -15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 108 -60.22 -94.19 REMARK 500 HIS A 110 68.25 -106.01 REMARK 500 GLN A 162 54.55 39.72 REMARK 500 ASP A 164 67.77 -105.73 REMARK 500 LYS B 55 45.95 -82.77 REMARK 500 TYR B 161 -110.07 -94.48 REMARK 500 GLN B 198 -41.37 -133.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 69 LEU B 70 147.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC80416 RELATED DB: TARGETDB DBREF 2BE3 A 1 223 UNP Q97QV1 Q97QV1_STRPN 1 223 DBREF 2BE3 B 1 223 UNP Q97QV1 Q97QV1_STRPN 1 223 SEQADV 2BE3 SER A -2 UNP Q97QV1 CLONING ARTIFACT SEQADV 2BE3 ASN A -1 UNP Q97QV1 CLONING ARTIFACT SEQADV 2BE3 ALA A 0 UNP Q97QV1 CLONING ARTIFACT SEQADV 2BE3 MSE A 1 UNP Q97QV1 MET 1 MODIFIED RESIDUE SEQADV 2BE3 MSE A 56 UNP Q97QV1 MET 56 MODIFIED RESIDUE SEQADV 2BE3 MSE A 79 UNP Q97QV1 MET 79 MODIFIED RESIDUE SEQADV 2BE3 MSE A 99 UNP Q97QV1 MET 99 MODIFIED RESIDUE SEQADV 2BE3 MSE A 147 UNP Q97QV1 MET 147 MODIFIED RESIDUE SEQADV 2BE3 MSE A 187 UNP Q97QV1 MET 187 MODIFIED RESIDUE SEQADV 2BE3 SER B -2 UNP Q97QV1 CLONING ARTIFACT SEQADV 2BE3 ASN B -1 UNP Q97QV1 CLONING ARTIFACT SEQADV 2BE3 ALA B 0 UNP Q97QV1 CLONING ARTIFACT SEQADV 2BE3 MSE B 1 UNP Q97QV1 MET 1 MODIFIED RESIDUE SEQADV 2BE3 MSE B 56 UNP Q97QV1 MET 56 MODIFIED RESIDUE SEQADV 2BE3 MSE B 79 UNP Q97QV1 MET 79 MODIFIED RESIDUE SEQADV 2BE3 MSE B 99 UNP Q97QV1 MET 99 MODIFIED RESIDUE SEQADV 2BE3 MSE B 147 UNP Q97QV1 MET 147 MODIFIED RESIDUE SEQADV 2BE3 MSE B 187 UNP Q97QV1 MET 187 MODIFIED RESIDUE SEQRES 1 A 226 SER ASN ALA MSE THR LEU GLU TRP GLU GLU PHE LEU ASP SEQRES 2 A 226 PRO TYR ILE GLN ALA VAL GLY GLU LEU LYS ILE LYS LEU SEQRES 3 A 226 ARG GLY ILE ARG LYS GLN TYR ARG LYS GLN ASN LYS HIS SEQRES 4 A 226 SER PRO ILE GLU PHE VAL THR GLY ARG VAL LYS PRO ILE SEQRES 5 A 226 GLU SER ILE LYS GLU LYS MSE ALA ARG ARG GLY ILE THR SEQRES 6 A 226 TYR ALA THR LEU GLU HIS ASP LEU GLN ASP ILE ALA GLY SEQRES 7 A 226 LEU ARG VAL MSE VAL GLN PHE VAL ASP ASP VAL LYS GLU SEQRES 8 A 226 VAL VAL ASP ILE LEU HIS LYS ARG GLN ASP MSE ARG ILE SEQRES 9 A 226 ILE GLN GLU ARG ASP TYR ILE THR HIS ARG LYS ALA SER SEQRES 10 A 226 GLY TYR ARG SER TYR HIS VAL VAL VAL GLU TYR THR VAL SEQRES 11 A 226 ASP THR ILE ASN GLY ALA LYS THR ILE LEU ALA GLU ILE SEQRES 12 A 226 GLN ILE ARG THR LEU ALA MSE ASN PHE TRP ALA THR ILE SEQRES 13 A 226 GLU HIS SER LEU ASN TYR LYS TYR GLN GLY ASP PHE PRO SEQRES 14 A 226 ASP GLU ILE LYS LYS ARG LEU GLU ILE THR ALA ARG ILE SEQRES 15 A 226 ALA HIS GLN LEU ASP GLU GLU MSE GLY GLU ILE ARG ASP SEQRES 16 A 226 ASP ILE GLN GLU ALA GLN ALA LEU PHE ASP PRO LEU SER SEQRES 17 A 226 ARG LYS LEU ASN ASP GLY VAL GLY ASN SER ASP ASP THR SEQRES 18 A 226 ASP GLU GLU TYR ARG SEQRES 1 B 226 SER ASN ALA MSE THR LEU GLU TRP GLU GLU PHE LEU ASP SEQRES 2 B 226 PRO TYR ILE GLN ALA VAL GLY GLU LEU LYS ILE LYS LEU SEQRES 3 B 226 ARG GLY ILE ARG LYS GLN TYR ARG LYS GLN ASN LYS HIS SEQRES 4 B 226 SER PRO ILE GLU PHE VAL THR GLY ARG VAL LYS PRO ILE SEQRES 5 B 226 GLU SER ILE LYS GLU LYS MSE ALA ARG ARG GLY ILE THR SEQRES 6 B 226 TYR ALA THR LEU GLU HIS ASP LEU GLN ASP ILE ALA GLY SEQRES 7 B 226 LEU ARG VAL MSE VAL GLN PHE VAL ASP ASP VAL LYS GLU SEQRES 8 B 226 VAL VAL ASP ILE LEU HIS LYS ARG GLN ASP MSE ARG ILE SEQRES 9 B 226 ILE GLN GLU ARG ASP TYR ILE THR HIS ARG LYS ALA SER SEQRES 10 B 226 GLY TYR ARG SER TYR HIS VAL VAL VAL GLU TYR THR VAL SEQRES 11 B 226 ASP THR ILE ASN GLY ALA LYS THR ILE LEU ALA GLU ILE SEQRES 12 B 226 GLN ILE ARG THR LEU ALA MSE ASN PHE TRP ALA THR ILE SEQRES 13 B 226 GLU HIS SER LEU ASN TYR LYS TYR GLN GLY ASP PHE PRO SEQRES 14 B 226 ASP GLU ILE LYS LYS ARG LEU GLU ILE THR ALA ARG ILE SEQRES 15 B 226 ALA HIS GLN LEU ASP GLU GLU MSE GLY GLU ILE ARG ASP SEQRES 16 B 226 ASP ILE GLN GLU ALA GLN ALA LEU PHE ASP PRO LEU SER SEQRES 17 B 226 ARG LYS LEU ASN ASP GLY VAL GLY ASN SER ASP ASP THR SEQRES 18 B 226 ASP GLU GLU TYR ARG MODRES 2BE3 MSE A 1 MET SELENOMETHIONINE MODRES 2BE3 MSE A 56 MET SELENOMETHIONINE MODRES 2BE3 MSE A 79 MET SELENOMETHIONINE MODRES 2BE3 MSE A 99 MET SELENOMETHIONINE MODRES 2BE3 MSE A 147 MET SELENOMETHIONINE MODRES 2BE3 MSE A 187 MET SELENOMETHIONINE MODRES 2BE3 MSE B 56 MET SELENOMETHIONINE MODRES 2BE3 MSE B 79 MET SELENOMETHIONINE MODRES 2BE3 MSE B 99 MET SELENOMETHIONINE MODRES 2BE3 MSE B 147 MET SELENOMETHIONINE MODRES 2BE3 MSE B 187 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 56 8 HET MSE A 79 8 HET MSE A 99 8 HET MSE A 147 8 HET MSE A 187 8 HET MSE B 56 8 HET MSE B 79 8 HET MSE B 99 8 HET MSE B 147 8 HET MSE B 187 8 HET CL A 301 1 HET PG4 A 303 13 HET GOL A 302 6 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 CL CL 1- FORMUL 4 PG4 C8 H18 O5 FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *251(H2 O) HELIX 1 1 THR A 2 GLN A 33 1 32 HELIX 2 2 PRO A 48 GLY A 60 1 13 HELIX 3 3 THR A 65 LEU A 70 1 6 HELIX 4 4 PHE A 82 ASP A 84 5 3 HELIX 5 5 ASP A 85 LYS A 95 1 11 HELIX 6 6 LEU A 145 GLN A 162 1 18 HELIX 7 7 PRO A 166 GLU A 189 1 24 HELIX 8 8 ILE A 190 PHE A 201 1 12 HELIX 9 9 THR B 2 GLN B 33 1 32 HELIX 10 10 PRO B 48 LYS B 55 1 8 HELIX 11 11 ASP B 84 LYS B 95 1 12 HELIX 12 12 LEU B 145 TYR B 161 1 17 HELIX 13 13 PRO B 166 LEU B 200 1 35 SHEET 1 A 5 ILE A 39 VAL A 46 0 SHEET 2 A 5 ALA A 74 VAL A 80 -1 O MSE A 79 N GLU A 40 SHEET 3 A 5 LYS A 134 THR A 144 1 O GLN A 141 N VAL A 78 SHEET 4 A 5 TYR A 119 VAL A 127 -1 N VAL A 121 O ILE A 140 SHEET 5 A 5 MSE A 99 ASP A 106 -1 N ARG A 100 O GLU A 124 SHEET 1 B 5 ILE B 39 VAL B 46 0 SHEET 2 B 5 ALA B 74 VAL B 80 -1 O MSE B 79 N GLU B 40 SHEET 3 B 5 LYS B 134 THR B 144 1 O GLN B 141 N LEU B 76 SHEET 4 B 5 TYR B 119 VAL B 127 -1 N TYR B 119 O ILE B 142 SHEET 5 B 5 MSE B 99 ASP B 106 -1 N ILE B 102 O VAL B 122 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C LYS A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N ALA A 57 1555 1555 1.33 LINK C VAL A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N VAL A 80 1555 1555 1.33 LINK C ASP A 98 N MSE A 99 1555 1555 1.32 LINK C MSE A 99 N ARG A 100 1555 1555 1.32 LINK C ALA A 146 N MSE A 147 1555 1555 1.34 LINK C MSE A 147 N ASN A 148 1555 1555 1.33 LINK C GLU A 186 N MSE A 187 1555 1555 1.33 LINK C MSE A 187 N GLY A 188 1555 1555 1.33 LINK C LYS B 55 N MSE B 56 1555 1555 1.33 LINK C MSE B 56 N ALA B 57 1555 1555 1.34 LINK C VAL B 78 N MSE B 79 1555 1555 1.34 LINK C MSE B 79 N VAL B 80 1555 1555 1.33 LINK C ASP B 98 N MSE B 99 1555 1555 1.33 LINK C MSE B 99 N ARG B 100 1555 1555 1.32 LINK C ALA B 146 N MSE B 147 1555 1555 1.34 LINK C MSE B 147 N ASN B 148 1555 1555 1.32 LINK C GLU B 186 N MSE B 187 1555 1555 1.33 LINK C MSE B 187 N GLY B 188 1555 1555 1.34 SITE 1 AC1 2 ARG A 24 ARG A 27 SITE 1 AC2 3 GLU A 4 PHE A 8 TYR A 63 SITE 1 AC3 4 ARG A 105 ASP A 106 TYR A 107 HIS A 110 CRYST1 104.843 104.843 170.562 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009538 0.005507 0.000000 0.00000 SCALE2 0.000000 0.011014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005863 0.00000 HETATM 1 N MSE A 1 -10.897 82.758 2.960 1.00109.66 N HETATM 2 CA MSE A 1 -11.233 81.307 3.112 1.00108.90 C HETATM 3 C MSE A 1 -12.672 80.980 2.647 1.00107.53 C HETATM 4 O MSE A 1 -13.580 80.761 3.457 1.00107.41 O HETATM 5 CB MSE A 1 -10.956 80.834 4.555 1.00110.44 C HETATM 6 CG MSE A 1 -11.284 79.350 4.842 1.00111.89 C HETATM 7 SE MSE A 1 -10.228 77.987 3.837 1.00124.75 SE HETATM 8 CE MSE A 1 -8.679 77.703 5.178 1.00116.78 C