HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-OCT-05 2BE4 TITLE X-RAY STRUCTURE AN EF-HAND PROTEIN FROM DANIO RERIO DR.36843 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN LOC449832; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: DR.36843, BC083168; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP 16 KEYWDS DR.36843, BC083168, CALICIUM BINDING, EF-HAND SUPERFAMILY, STRUCTURAL KEYWDS 2 GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, CENTER FOR EUKARYOTIC KEYWDS 3 STRUCTURAL GENOMICS, CESG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR G.E.WESENBERG,G.N.PHILLIPS JR.,B.W.HAN,E.BITTO,C.A.BINGMAN,E.BAE, AUTHOR 2 CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 6 18-OCT-17 2BE4 1 REMARK REVDAT 5 06-FEB-13 2BE4 1 AUTHOR JRNL REVDAT 4 13-JUL-11 2BE4 1 VERSN REVDAT 3 17-NOV-09 2BE4 1 JRNL REVDAT 2 24-FEB-09 2BE4 1 VERSN REVDAT 1 01-NOV-05 2BE4 0 JRNL AUTH E.BITTO,C.A.BINGMAN,L.BITTOVA,R.O.FREDERICK,B.G.FOX, JRNL AUTH 2 G.N.PHILLIPS JR. JRNL TITL X-RAY STRUCTURE OF DANIO RERIO SECRETAGOGIN: A HEXA-EF-HAND JRNL TITL 2 CALCIUM SENSOR. JRNL REF PROTEINS V. 76 477 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19241471 JRNL DOI 10.1002/PROT.22362 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 17336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.105 REMARK 3 FREE R VALUE TEST SET COUNT : 885 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1144 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2203 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96500 REMARK 3 B22 (A**2) : -0.85400 REMARK 3 B33 (A**2) : -0.11100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.228 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.210 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2247 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3011 ; 1.586 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 269 ; 5.731 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;29.854 ;24.957 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 439 ;16.312 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;22.609 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 317 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1698 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1072 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1557 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 176 ; 0.206 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.191 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1397 ; 1.687 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2155 ; 2.870 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 962 ; 4.811 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 856 ; 6.373 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): -21.3360 -4.5700 28.6200 REMARK 3 T TENSOR REMARK 3 T11: -0.1362 T22: -0.1652 REMARK 3 T33: -0.0937 T12: 0.0267 REMARK 3 T13: -0.0173 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.8140 L22: 2.1463 REMARK 3 L33: 7.5630 L12: -0.0976 REMARK 3 L13: -2.4164 L23: -0.5801 REMARK 3 S TENSOR REMARK 3 S11: 0.1320 S12: 0.1802 S13: 0.1707 REMARK 3 S21: -0.0549 S22: 0.0040 S23: 0.2961 REMARK 3 S31: -0.0335 S32: -0.3826 S33: -0.1361 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2880 -5.5960 49.8120 REMARK 3 T TENSOR REMARK 3 T11: -0.1164 T22: -0.1819 REMARK 3 T33: -0.2027 T12: 0.0078 REMARK 3 T13: 0.0196 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 5.8022 L22: 2.9654 REMARK 3 L33: 3.8697 L12: 1.0514 REMARK 3 L13: 0.2587 L23: 0.5404 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: 0.1014 S13: -0.1004 REMARK 3 S21: -0.0855 S22: -0.0830 S23: -0.0782 REMARK 3 S31: 0.1012 S32: 0.0156 S33: 0.0333 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 185 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2790 15.7480 42.7920 REMARK 3 T TENSOR REMARK 3 T11: -0.0941 T22: 0.0149 REMARK 3 T33: -0.0863 T12: -0.0483 REMARK 3 T13: 0.0267 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 8.7373 L22: 8.2647 REMARK 3 L33: 4.5808 L12: 2.9060 REMARK 3 L13: -1.9578 L23: -0.8259 REMARK 3 S TENSOR REMARK 3 S11: -0.2059 S12: 0.3414 S13: -0.2703 REMARK 3 S21: 0.0509 S22: 0.1182 S23: 0.6224 REMARK 3 S31: 0.2117 S32: -0.7777 S33: 0.0877 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SELENIUM C COEFFICIENT FOR STRUCTURE REMARK 3 FACTOR CALCULATION SET TO -9.00, MOLPROBITY USED TO ASSIST IN REMARK 3 FINAL MODEL BUILDING. REMARK 4 REMARK 4 2BE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911, 0.96411 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED SI (220) REMARK 200 DOUBLE BOUNCE REMARK 200 OPTICS : HORIZONTAL SAGITALLY FOCUSING REMARK 200 2ND BENT MONOCHROMATOR CRYSTAL, REMARK 200 VERTICAL BENT FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17378 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0520 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.779 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, DM 5.0, PHENIX, SHELXD, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 26% PEG 2K, 0.100 M REMARK 280 BTP, PH 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.94200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.18200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.37400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.18200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.94200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.37400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ASP A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 244 O HOH A 374 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 233 C SER A 234 N 0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 95 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 158 50.38 -110.87 REMARK 500 LYS A 161 15.73 59.34 REMARK 500 LEU A 182 19.25 -56.28 REMARK 500 ALA A 188 -75.37 -48.75 REMARK 500 SER A 234 150.98 -43.41 REMARK 500 MSE A 251 -75.50 -66.83 REMARK 500 LYS A 253 20.91 -70.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.74073 RELATED DB: TARGETDB DBREF 2BE4 A 2 272 UNP Q5XJX1 Q5XJX1_BRARE 2 272 SEQADV 2BE4 SER A 1 UNP Q5XJX1 CLONING ARTIFACT SEQADV 2BE4 MSE A 40 UNP Q5XJX1 MET 40 MODIFIED RESIDUE SEQADV 2BE4 MSE A 63 UNP Q5XJX1 MET 63 MODIFIED RESIDUE SEQADV 2BE4 MSE A 82 UNP Q5XJX1 MET 82 MODIFIED RESIDUE SEQADV 2BE4 MSE A 107 UNP Q5XJX1 MET 107 MODIFIED RESIDUE SEQADV 2BE4 MSE A 153 UNP Q5XJX1 MET 153 MODIFIED RESIDUE SEQADV 2BE4 MSE A 154 UNP Q5XJX1 MET 154 MODIFIED RESIDUE SEQADV 2BE4 MSE A 186 UNP Q5XJX1 MET 186 MODIFIED RESIDUE SEQADV 2BE4 MSE A 225 UNP Q5XJX1 MET 225 MODIFIED RESIDUE SEQADV 2BE4 MSE A 226 UNP Q5XJX1 MET 226 MODIFIED RESIDUE SEQADV 2BE4 MSE A 251 UNP Q5XJX1 MET 251 MODIFIED RESIDUE SEQRES 1 A 272 SER ASP SER ALA PHE ALA ASN LEU ASP ALA ALA GLY PHE SEQRES 2 A 272 LEU GLN ILE TRP GLN HIS PHE ASP ALA ASP ASP ASN GLY SEQRES 3 A 272 TYR ILE GLU GLY LYS GLU LEU ASP ASP PHE PHE ARG HIS SEQRES 4 A 272 MSE LEU LYS LYS LEU GLN PRO LYS ASP LYS ILE THR ASP SEQRES 5 A 272 GLU ARG VAL GLN GLN ILE LYS LYS SER PHE MSE SER ALA SEQRES 6 A 272 TYR ASP ALA THR PHE ASP GLY ARG LEU GLN ILE GLU GLU SEQRES 7 A 272 LEU ALA ASN MSE ILE LEU PRO GLN GLU GLU ASN PHE LEU SEQRES 8 A 272 LEU ILE PHE ARG ARG GLU ALA PRO LEU ASP ASN SER VAL SEQRES 9 A 272 GLU PHE MSE LYS ILE TRP ARG LYS TYR ASP ALA ASP SER SEQRES 10 A 272 SER GLY TYR ILE SER ALA ALA GLU LEU LYS ASN PHE LEU SEQRES 11 A 272 LYS ASP LEU PHE LEU GLN HIS LYS LYS LYS ILE PRO PRO SEQRES 12 A 272 ASN LYS LEU ASP GLU TYR THR ASP ALA MSE MSE LYS ILE SEQRES 13 A 272 PHE ASP LYS ASN LYS ASP GLY ARG LEU ASP LEU ASN ASP SEQRES 14 A 272 LEU ALA ARG ILE LEU ALA LEU GLN GLU ASN PHE LEU LEU SEQRES 15 A 272 GLN PHE LYS MSE ASP ALA SER SER GLN VAL GLU ARG LYS SEQRES 16 A 272 ARG ASP PHE GLU LYS ILE PHE ALA HIS TYR ASP VAL SER SEQRES 17 A 272 ARG THR GLY ALA LEU GLU GLY PRO GLU VAL ASP GLY PHE SEQRES 18 A 272 VAL LYS ASP MSE MSE GLU LEU VAL ARG PRO SER ILE SER SEQRES 19 A 272 GLY GLY ASP LEU ASP LYS PHE ARG GLU CYS LEU LEU THR SEQRES 20 A 272 HIS CYS ASP MSE ASN LYS ASP GLY LYS ILE GLN LYS SER SEQRES 21 A 272 GLU LEU ALA LEU CYS LEU GLY LEU LYS HIS LYS PRO MODRES 2BE4 MSE A 40 MET SELENOMETHIONINE MODRES 2BE4 MSE A 63 MET SELENOMETHIONINE MODRES 2BE4 MSE A 82 MET SELENOMETHIONINE MODRES 2BE4 MSE A 107 MET SELENOMETHIONINE MODRES 2BE4 MSE A 153 MET SELENOMETHIONINE MODRES 2BE4 MSE A 154 MET SELENOMETHIONINE MODRES 2BE4 MSE A 186 MET SELENOMETHIONINE MODRES 2BE4 MSE A 225 MET SELENOMETHIONINE MODRES 2BE4 MSE A 226 MET SELENOMETHIONINE MODRES 2BE4 MSE A 251 MET SELENOMETHIONINE HET MSE A 40 8 HET MSE A 63 8 HET MSE A 82 8 HET MSE A 107 8 HET MSE A 153 8 HET MSE A 154 8 HET MSE A 186 8 HET MSE A 225 8 HET MSE A 226 8 HET MSE A 251 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 HOH *240(H2 O) HELIX 1 1 ASP A 9 ASP A 21 1 13 HELIX 2 2 GLU A 32 GLN A 45 1 14 HELIX 3 3 THR A 51 MSE A 63 1 13 HELIX 4 4 SER A 64 THR A 69 1 6 HELIX 5 5 ILE A 76 LEU A 84 1 9 HELIX 6 6 PRO A 85 ALA A 98 1 14 HELIX 7 7 ASN A 102 ASP A 114 1 13 HELIX 8 8 GLU A 125 HIS A 137 1 13 HELIX 9 9 PRO A 142 ASP A 158 1 17 HELIX 10 10 LEU A 167 ALA A 171 1 5 HELIX 11 11 ARG A 172 LEU A 174 5 3 HELIX 12 12 ASP A 187 ASP A 206 1 20 HELIX 13 13 GLY A 215 ARG A 230 1 16 HELIX 14 14 SER A 234 ASP A 250 1 17 HELIX 15 15 LYS A 259 LEU A 266 1 8 SHEET 1 A 2 TYR A 27 GLU A 29 0 SHEET 2 A 2 ARG A 73 GLN A 75 -1 O LEU A 74 N ILE A 28 SHEET 1 B 2 TYR A 120 SER A 122 0 SHEET 2 B 2 ARG A 164 ASP A 166 -1 O LEU A 165 N ILE A 121 SHEET 1 C 2 ALA A 212 GLU A 214 0 SHEET 2 C 2 LYS A 256 GLN A 258 -1 O ILE A 257 N LEU A 213 LINK C HIS A 39 N MSE A 40 1555 1555 1.32 LINK C MSE A 40 N LEU A 41 1555 1555 1.33 LINK C PHE A 62 N MSE A 63 1555 1555 1.32 LINK C MSE A 63 N SER A 64 1555 1555 1.33 LINK C ASN A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N ILE A 83 1555 1555 1.31 LINK C PHE A 106 N MSE A 107 1555 1555 1.31 LINK C MSE A 107 N LYS A 108 1555 1555 1.33 LINK C ALA A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N MSE A 154 1555 1555 1.35 LINK C MSE A 154 N LYS A 155 1555 1555 1.33 LINK C LYS A 185 N MSE A 186 1555 1555 1.33 LINK C MSE A 186 N ASP A 187 1555 1555 1.36 LINK C ASP A 224 N MSE A 225 1555 1555 1.32 LINK C MSE A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N GLU A 227 1555 1555 1.34 LINK C ASP A 250 N MSE A 251 1555 1555 1.33 LINK C MSE A 251 N ASN A 252 1555 1555 1.34 CRYST1 47.884 52.748 114.364 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020880 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008740 0.00000