HEADER ISOMERASE 30-NOV-04 2BET TITLE STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE-5-PHOSPHATE ISOMERASE, TITLE 2 RPIB, RV2465C, IN COMPLEX WITH 4-PHOSPHO-D-ERYTHRONATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOHYDRATE-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: RIBOSE-5-PHOSPHATE ISOMERASE B; COMPND 5 EC: 5.3.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCR T7 KEYWDS RIBOSE 5-PHOSPHATE EPIMERASE, PHOSPHOPENTOSISOMERASE, PENTOSE KEYWDS 2 PHOSPHATE PATHWAY, HIGH-ENERGY ENEDIOLATE INTERMEDIATE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.ROOS,D.J.ERICSSON,S.L.MOWBRAY REVDAT 6 13-DEC-23 2BET 1 REMARK REVDAT 5 05-JUL-17 2BET 1 REMARK REVDAT 4 19-FEB-14 2BET 1 REMARK VERSN FORMUL REVDAT 3 24-FEB-09 2BET 1 VERSN REVDAT 2 23-FEB-05 2BET 1 JRNL REVDAT 1 03-DEC-04 2BET 0 JRNL AUTH A.K.ROOS,E.BURGOS,D.J.ERICSSON,L.SALMON,S.L.MOWBRAY JRNL TITL COMPETITIVE INHIBITORS OF MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 RIBOSE-5-PHOSPHATE ISOMERASE B REVEAL NEW INFORMATION ABOUT JRNL TITL 3 THE REACTION MECHANISM JRNL REF J.BIOL.CHEM. V. 280 6416 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15590681 JRNL DOI 10.1074/JBC.M412018200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.K.ROOS,C.E.ANDERSSON,T.BERGFORS,M.JACOBSSON,A.KARLEN, REMARK 1 AUTH 2 T.UNGE,T.A.JONES,S.L.MOWBRAY REMARK 1 TITL MYCOBACTERIUM TUBERCULOSIS RIBOSE-5-PHOSPHATE ISOMERASE HAS REMARK 1 TITL 2 A KNOWN FOLD, BUT A NOVEL ACTIVE SITE REMARK 1 REF J.MOL.BIOL. V. 355 799 2004 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 14687575 REMARK 1 DOI 10.1016/J.JMB.2003.11.021 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 44466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2358 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3246 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5927 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 452 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.68000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : 1.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.77000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.282 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.987 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6112 ; 0.005 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5511 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8312 ; 0.918 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12745 ; 0.722 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 782 ; 4.863 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 913 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6969 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1232 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1294 ; 0.158 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6356 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3573 ; 0.078 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 396 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.115 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 70 ; 0.230 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.110 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3891 ; 0.233 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6177 ; 0.440 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2221 ; 0.530 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2135 ; 0.978 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BET COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1290021595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2821 REMARK 200 MONOCHROMATOR : S1(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46824 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 81.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1USL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.65 M AMMONIUM PHOSPHATE, 0.1 M MES, REMARK 280 PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.36750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.35500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.36750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.35500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 129.60151 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 69.62351 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2031 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 ALA A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 160 REMARK 465 PRO A 161 REMARK 465 ALA A 162 REMARK 465 MET B -9 REMARK 465 ALA B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 160 REMARK 465 PRO B 161 REMARK 465 ALA B 162 REMARK 465 MET C -9 REMARK 465 ALA C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 SER C -1 REMARK 465 GLY C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 PRO C 161 REMARK 465 ALA C 162 REMARK 465 MET D -9 REMARK 465 ALA D -8 REMARK 465 HIS D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 SER D -1 REMARK 465 GLY D 0 REMARK 465 MET D 1 REMARK 465 GLY D 159 REMARK 465 ALA D 160 REMARK 465 PRO D 161 REMARK 465 ALA D 162 REMARK 465 MET E -9 REMARK 465 ALA E -8 REMARK 465 HIS E -7 REMARK 465 HIS E -6 REMARK 465 HIS E -5 REMARK 465 HIS E -4 REMARK 465 HIS E -3 REMARK 465 HIS E -2 REMARK 465 SER E -1 REMARK 465 GLY E 0 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 PRO E 161 REMARK 465 ALA E 162 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 43 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 34 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP D 34 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA E 10 145.76 -170.08 REMARK 500 PRO E 158 39.20 -59.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D2004 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH E2002 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH E2007 DISTANCE = 5.98 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEZ A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEZ B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEZ C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEZ D 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEZ E 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BES RELATED DB: PDB REMARK 900 STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE- 5-PHOSPHATE REMARK 900 ISOMERASE, RPIB, RV2465C, IN COMPLEX WITH 4-PHOSPHO-D- REMARK 900 ERYTHRONOHYDROXAMIC ACID. DBREF 2BET A -9 3 PDB 2BET 2BET -9 3 DBREF 2BET A 4 162 UNP Q7D737 Q7D737 1 159 DBREF 2BET B -9 3 PDB 2BET 2BET -9 3 DBREF 2BET B 4 162 UNP Q7D737 Q7D737 1 159 DBREF 2BET C -9 3 PDB 2BET 2BET -9 3 DBREF 2BET C 4 162 UNP Q7D737 Q7D737 1 159 DBREF 2BET D -9 3 PDB 2BET 2BET -9 3 DBREF 2BET D 4 162 UNP Q7D737 Q7D737 1 159 DBREF 2BET E -9 3 PDB 2BET 2BET -9 3 DBREF 2BET E 4 162 UNP Q7D737 Q7D737 1 159 SEQRES 1 A 172 MET ALA HIS HIS HIS HIS HIS HIS SER GLY MET SER GLY SEQRES 2 A 172 MET ARG VAL TYR LEU GLY ALA ASP HIS ALA GLY TYR GLU SEQRES 3 A 172 LEU LYS GLN ARG ILE ILE GLU HIS LEU LYS GLN THR GLY SEQRES 4 A 172 HIS GLU PRO ILE ASP CYS GLY ALA LEU ARG TYR ASP ALA SEQRES 5 A 172 ASP ASP ASP TYR PRO ALA PHE CYS ILE ALA ALA ALA THR SEQRES 6 A 172 ARG THR VAL ALA ASP PRO GLY SER LEU GLY ILE VAL LEU SEQRES 7 A 172 GLY GLY SER GLY ASN GLY GLU GLN ILE ALA ALA ASN LYS SEQRES 8 A 172 VAL PRO GLY ALA ARG CYS ALA LEU ALA TRP SER VAL GLN SEQRES 9 A 172 THR ALA ALA LEU ALA ARG GLU HIS ASN ASN ALA GLN LEU SEQRES 10 A 172 ILE GLY ILE GLY GLY ARG MET HIS THR VAL ALA GLU ALA SEQRES 11 A 172 LEU ALA ILE VAL ASP ALA PHE VAL THR THR PRO TRP SER SEQRES 12 A 172 LYS ALA GLN ARG HIS GLN ARG ARG ILE ASP ILE LEU ALA SEQRES 13 A 172 GLU TYR GLU ARG THR HIS GLU ALA PRO PRO VAL PRO GLY SEQRES 14 A 172 ALA PRO ALA SEQRES 1 B 172 MET ALA HIS HIS HIS HIS HIS HIS SER GLY MET SER GLY SEQRES 2 B 172 MET ARG VAL TYR LEU GLY ALA ASP HIS ALA GLY TYR GLU SEQRES 3 B 172 LEU LYS GLN ARG ILE ILE GLU HIS LEU LYS GLN THR GLY SEQRES 4 B 172 HIS GLU PRO ILE ASP CYS GLY ALA LEU ARG TYR ASP ALA SEQRES 5 B 172 ASP ASP ASP TYR PRO ALA PHE CYS ILE ALA ALA ALA THR SEQRES 6 B 172 ARG THR VAL ALA ASP PRO GLY SER LEU GLY ILE VAL LEU SEQRES 7 B 172 GLY GLY SER GLY ASN GLY GLU GLN ILE ALA ALA ASN LYS SEQRES 8 B 172 VAL PRO GLY ALA ARG CYS ALA LEU ALA TRP SER VAL GLN SEQRES 9 B 172 THR ALA ALA LEU ALA ARG GLU HIS ASN ASN ALA GLN LEU SEQRES 10 B 172 ILE GLY ILE GLY GLY ARG MET HIS THR VAL ALA GLU ALA SEQRES 11 B 172 LEU ALA ILE VAL ASP ALA PHE VAL THR THR PRO TRP SER SEQRES 12 B 172 LYS ALA GLN ARG HIS GLN ARG ARG ILE ASP ILE LEU ALA SEQRES 13 B 172 GLU TYR GLU ARG THR HIS GLU ALA PRO PRO VAL PRO GLY SEQRES 14 B 172 ALA PRO ALA SEQRES 1 C 172 MET ALA HIS HIS HIS HIS HIS HIS SER GLY MET SER GLY SEQRES 2 C 172 MET ARG VAL TYR LEU GLY ALA ASP HIS ALA GLY TYR GLU SEQRES 3 C 172 LEU LYS GLN ARG ILE ILE GLU HIS LEU LYS GLN THR GLY SEQRES 4 C 172 HIS GLU PRO ILE ASP CYS GLY ALA LEU ARG TYR ASP ALA SEQRES 5 C 172 ASP ASP ASP TYR PRO ALA PHE CYS ILE ALA ALA ALA THR SEQRES 6 C 172 ARG THR VAL ALA ASP PRO GLY SER LEU GLY ILE VAL LEU SEQRES 7 C 172 GLY GLY SER GLY ASN GLY GLU GLN ILE ALA ALA ASN LYS SEQRES 8 C 172 VAL PRO GLY ALA ARG CYS ALA LEU ALA TRP SER VAL GLN SEQRES 9 C 172 THR ALA ALA LEU ALA ARG GLU HIS ASN ASN ALA GLN LEU SEQRES 10 C 172 ILE GLY ILE GLY GLY ARG MET HIS THR VAL ALA GLU ALA SEQRES 11 C 172 LEU ALA ILE VAL ASP ALA PHE VAL THR THR PRO TRP SER SEQRES 12 C 172 LYS ALA GLN ARG HIS GLN ARG ARG ILE ASP ILE LEU ALA SEQRES 13 C 172 GLU TYR GLU ARG THR HIS GLU ALA PRO PRO VAL PRO GLY SEQRES 14 C 172 ALA PRO ALA SEQRES 1 D 172 MET ALA HIS HIS HIS HIS HIS HIS SER GLY MET SER GLY SEQRES 2 D 172 MET ARG VAL TYR LEU GLY ALA ASP HIS ALA GLY TYR GLU SEQRES 3 D 172 LEU LYS GLN ARG ILE ILE GLU HIS LEU LYS GLN THR GLY SEQRES 4 D 172 HIS GLU PRO ILE ASP CYS GLY ALA LEU ARG TYR ASP ALA SEQRES 5 D 172 ASP ASP ASP TYR PRO ALA PHE CYS ILE ALA ALA ALA THR SEQRES 6 D 172 ARG THR VAL ALA ASP PRO GLY SER LEU GLY ILE VAL LEU SEQRES 7 D 172 GLY GLY SER GLY ASN GLY GLU GLN ILE ALA ALA ASN LYS SEQRES 8 D 172 VAL PRO GLY ALA ARG CYS ALA LEU ALA TRP SER VAL GLN SEQRES 9 D 172 THR ALA ALA LEU ALA ARG GLU HIS ASN ASN ALA GLN LEU SEQRES 10 D 172 ILE GLY ILE GLY GLY ARG MET HIS THR VAL ALA GLU ALA SEQRES 11 D 172 LEU ALA ILE VAL ASP ALA PHE VAL THR THR PRO TRP SER SEQRES 12 D 172 LYS ALA GLN ARG HIS GLN ARG ARG ILE ASP ILE LEU ALA SEQRES 13 D 172 GLU TYR GLU ARG THR HIS GLU ALA PRO PRO VAL PRO GLY SEQRES 14 D 172 ALA PRO ALA SEQRES 1 E 172 MET ALA HIS HIS HIS HIS HIS HIS SER GLY MET SER GLY SEQRES 2 E 172 MET ARG VAL TYR LEU GLY ALA ASP HIS ALA GLY TYR GLU SEQRES 3 E 172 LEU LYS GLN ARG ILE ILE GLU HIS LEU LYS GLN THR GLY SEQRES 4 E 172 HIS GLU PRO ILE ASP CYS GLY ALA LEU ARG TYR ASP ALA SEQRES 5 E 172 ASP ASP ASP TYR PRO ALA PHE CYS ILE ALA ALA ALA THR SEQRES 6 E 172 ARG THR VAL ALA ASP PRO GLY SER LEU GLY ILE VAL LEU SEQRES 7 E 172 GLY GLY SER GLY ASN GLY GLU GLN ILE ALA ALA ASN LYS SEQRES 8 E 172 VAL PRO GLY ALA ARG CYS ALA LEU ALA TRP SER VAL GLN SEQRES 9 E 172 THR ALA ALA LEU ALA ARG GLU HIS ASN ASN ALA GLN LEU SEQRES 10 E 172 ILE GLY ILE GLY GLY ARG MET HIS THR VAL ALA GLU ALA SEQRES 11 E 172 LEU ALA ILE VAL ASP ALA PHE VAL THR THR PRO TRP SER SEQRES 12 E 172 LYS ALA GLN ARG HIS GLN ARG ARG ILE ASP ILE LEU ALA SEQRES 13 E 172 GLU TYR GLU ARG THR HIS GLU ALA PRO PRO VAL PRO GLY SEQRES 14 E 172 ALA PRO ALA HET DEZ A 200 13 HET DEZ B 200 13 HET DEZ C 200 13 HET DEZ D 200 13 HET DEZ E 200 13 HETNAM DEZ 4-PHOSPHO-D-ERYTHRONATE FORMUL 6 DEZ 5(C4 H9 O8 P) FORMUL 11 HOH *452(H2 O) HELIX 1 1 ASP A 11 THR A 28 1 18 HELIX 2 2 TYR A 46 ALA A 59 1 14 HELIX 3 3 GLY A 72 LYS A 81 1 10 HELIX 4 4 SER A 92 HIS A 102 1 11 HELIX 5 5 THR A 116 THR A 130 1 15 HELIX 6 6 ALA A 135 HIS A 152 1 18 HELIX 7 7 GLY B 14 THR B 28 1 15 HELIX 8 8 TYR B 46 ALA B 59 1 14 HELIX 9 9 GLY B 72 LYS B 81 1 10 HELIX 10 10 SER B 92 HIS B 102 1 11 HELIX 11 11 THR B 116 THR B 130 1 15 HELIX 12 12 ALA B 135 HIS B 152 1 18 HELIX 13 13 GLY C 14 THR C 28 1 15 HELIX 14 14 TYR C 46 ASP C 60 1 15 HELIX 15 15 GLY C 72 LYS C 81 1 10 HELIX 16 16 SER C 92 HIS C 102 1 11 HELIX 17 17 THR C 116 THR C 130 1 15 HELIX 18 18 ALA C 135 HIS C 152 1 18 HELIX 19 19 GLY D 14 THR D 28 1 15 HELIX 20 20 ASP D 45 ALA D 59 1 15 HELIX 21 21 GLY D 72 LYS D 81 1 10 HELIX 22 22 SER D 92 HIS D 102 1 11 HELIX 23 23 THR D 116 THR D 130 1 15 HELIX 24 24 ALA D 135 HIS D 152 1 18 HELIX 25 25 GLY E 14 THR E 28 1 15 HELIX 26 26 TYR E 46 ALA E 59 1 14 HELIX 27 27 GLY E 72 ASN E 80 1 9 HELIX 28 28 SER E 92 HIS E 102 1 11 HELIX 29 29 THR E 116 THR E 130 1 15 HELIX 30 30 ALA E 135 HIS E 152 1 18 SHEET 1 AA 5 GLU A 31 ASP A 34 0 SHEET 2 AA 5 ARG A 5 ALA A 10 1 O VAL A 6 N ILE A 33 SHEET 3 AA 5 LEU A 64 GLY A 69 1 O LEU A 64 N TYR A 7 SHEET 4 AA 5 LEU A 107 GLY A 111 1 O ILE A 108 N VAL A 67 SHEET 5 AA 5 ALA A 85 ALA A 90 1 O ALA A 88 N GLY A 109 SHEET 1 BA 5 GLU B 31 ASP B 34 0 SHEET 2 BA 5 ARG B 5 ALA B 10 1 O VAL B 6 N ILE B 33 SHEET 3 BA 5 LEU B 64 GLY B 69 1 O LEU B 64 N TYR B 7 SHEET 4 BA 5 LEU B 107 GLY B 111 1 O ILE B 108 N VAL B 67 SHEET 5 BA 5 ALA B 85 ALA B 90 1 O ALA B 88 N GLY B 109 SHEET 1 CA 5 GLU C 31 ASP C 34 0 SHEET 2 CA 5 ARG C 5 ALA C 10 1 O VAL C 6 N ILE C 33 SHEET 3 CA 5 LEU C 64 GLY C 69 1 O LEU C 64 N TYR C 7 SHEET 4 CA 5 LEU C 107 GLY C 111 1 O ILE C 108 N VAL C 67 SHEET 5 CA 5 ALA C 85 ALA C 90 1 O ALA C 88 N GLY C 109 SHEET 1 DA 5 GLU D 31 ASP D 34 0 SHEET 2 DA 5 ARG D 5 ALA D 10 1 O VAL D 6 N ILE D 33 SHEET 3 DA 5 LEU D 64 GLY D 69 1 O LEU D 64 N TYR D 7 SHEET 4 DA 5 LEU D 107 GLY D 111 1 O ILE D 108 N VAL D 67 SHEET 5 DA 5 ALA D 85 ALA D 90 1 O ALA D 88 N GLY D 109 SHEET 1 EA 5 GLU E 31 ASP E 34 0 SHEET 2 EA 5 ARG E 5 ALA E 10 1 O VAL E 6 N ILE E 33 SHEET 3 EA 5 LEU E 64 GLY E 69 1 O LEU E 64 N TYR E 7 SHEET 4 EA 5 LEU E 107 GLY E 111 1 O ILE E 108 N VAL E 67 SHEET 5 EA 5 ALA E 85 ALA E 90 1 O ALA E 88 N GLY E 109 CISPEP 1 GLY A 36 ALA A 37 0 5.01 CISPEP 2 GLY B 36 ALA B 37 0 4.65 CISPEP 3 GLY C 36 ALA C 37 0 4.74 CISPEP 4 GLY D 36 ALA D 37 0 3.59 CISPEP 5 GLY E 36 ALA E 37 0 5.53 SITE 1 AC1 16 ASP A 11 HIS A 12 GLY A 70 SER A 71 SITE 2 AC1 16 GLY A 74 GLU A 75 ARG A 113 HOH A2082 SITE 3 AC1 16 HOH A2083 HOH A2084 HOH A2085 HIS B 102 SITE 4 AC1 16 ASN B 103 ARG B 137 ARG B 141 HOH B2074 SITE 1 AC2 16 HIS A 102 ASN A 103 ARG A 137 ARG A 141 SITE 2 AC2 16 HOH A2049 HOH A2066 ASP B 11 HIS B 12 SITE 3 AC2 16 GLY B 70 SER B 71 GLY B 74 GLU B 75 SITE 4 AC2 16 ARG B 113 HOH B2019 HOH B2093 HOH B2094 SITE 1 AC3 16 ASP C 11 HIS C 12 GLY C 70 SER C 71 SITE 2 AC3 16 GLY C 74 GLU C 75 ARG C 113 HOH C2086 SITE 3 AC3 16 HOH C2087 HOH C2088 HIS D 102 ASN D 103 SITE 4 AC3 16 ARG D 137 ARG D 141 HOH D2074 HOH D2096 SITE 1 AC4 16 HIS C 102 ASN C 103 ARG C 137 ARG C 141 SITE 2 AC4 16 ASP D 11 HIS D 12 GLY D 70 SER D 71 SITE 3 AC4 16 GLY D 74 GLU D 75 ARG D 113 HOH D2037 SITE 4 AC4 16 HOH D2112 HOH D2113 HOH D2114 HOH D2115 SITE 1 AC5 15 ASP E 11 HIS E 12 GLY E 70 SER E 71 SITE 2 AC5 15 GLY E 74 GLU E 75 HIS E 102 ASN E 103 SITE 3 AC5 15 ARG E 113 ARG E 137 ARG E 141 HOH E2018 SITE 4 AC5 15 HOH E2068 HOH E2069 HOH E2070 CRYST1 136.735 102.710 69.988 90.00 95.85 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007313 0.000000 0.000749 0.00000 SCALE2 0.000000 0.009736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014363 0.00000 MTRIX1 1 -0.403200 0.909500 0.101200 22.63030 1 MTRIX2 1 0.910100 0.387100 0.147800 -17.00680 1 MTRIX3 1 0.095300 0.151700 -0.983800 19.91380 1 MTRIX1 2 -0.345200 -0.926400 0.150200 38.28980 1 MTRIX2 2 -0.927500 0.312300 -0.205300 35.21100 1 MTRIX3 2 0.143300 -0.210200 -0.967900 50.80060 1 MTRIX1 3 -0.689300 0.640400 -0.338900 43.99480 1 MTRIX2 3 -0.654300 -0.751000 -0.088400 39.14510 1 MTRIX3 3 -0.311100 0.160800 0.936700 -21.22860 1 MTRIX1 4 -0.765500 -0.546200 -0.340200 75.71690 1 MTRIX2 4 0.539500 -0.832900 0.123300 -43.24980 1 MTRIX3 4 -0.350700 -0.089100 0.932300 0.72220 1